AlignACE 3.0

Only input sequences of less than 50kb are allowed. Results will appear at the bottom of this page.

Enter sequence description (characters, numbers, and underscores only; no spaces or special symbols)

Number of columns to align

Number of sites to expect

Fractional background GC content

Enter FASTA-formatted sequence below:

Or select file:

The output format for each motif is as follows:

column 1: site sequence

column 2: sequence number

column 3: position of site within sequence

column 4: strand of site (1=forward, 0=reverse)