#/mnt/gattaca/jhughes/alignace/all_motifs_3/respiration.ace #0 YBL045C_YBL044W 481 bp YBL045C COR1 1-1374 44 kDa core protein of yeast coenzyme QH2 cytochrome c reductase YBL044W 1-369 #1 YBL099W 500 bp YBL099W ATP1 1-1638 mitochondrial F1F0-ATPase alpha subunit #2 YBR039W 500 bp YBR039W ATP3 1-936 gamma subunit of mitochondrial ATP synthase #3 YBR185C_YBR186W 593 bp YBR185C MBA1 1-837 YBR186W PCH2 1-1611 Putative ATPase #4 YBR192W 500 bp YBR192W RIM2 1-1134 #5 YDL005C_YDL004W 719 bp YDL005C MED2 1-1296 Stoichiometric member of mediator complex YDL004W ATP16 1-483 ATP synthase delta subunit #6 YDL067C_YDL066W 438 bp YDL067C COX9 1-180 Subunit VIIa of cytochrome c oxidase YDL066W IDP1 1-1287 Mitochondrial form of NADP-specific isocitrate dehydrogenase #7 YDL085W 500 bp YDL085W 1-1638 #8 YDL107W 221 bp YDL107W mss2 1-1056 cox1 pre-mRNA splicing factor #9 YDR078C_YDR079W 194 bp YDR078C 1-672 YDR079W PET100 1-336 cytochrome c oxidase-specific assembly factor #10 YDR178W 424 bp YDR178W SDH4 1-546 succinate dehydrogenase membrane anchor subunit #11 YDR298C_YDR299W 812 bp YDR298C ATP5 1-639 ATP synthase subunit 5\; oligomycin sensitivity-conferring protein YDR299W BFR2 1-1605 #12 YDR377W 307 bp YDR377W ATP17 1-306 ATP synthase subunit f #13 YDR529C 242 bp YDR529C QCR7 1-384 ubiquinol-cytochrome c oxidoreductase subunit 7 (14 kDa) #14 YEL024W 500 bp YEL024W RIP1 1-648 Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex #15 YEL039C_YEL038W 442 bp YEL039C cyc7 1-342 iso-2-cytochrome c YEL038W UTR4 1-726 #16 YEL053C_YEL052W 468 bp YEL053C mak10 1-2202 YEL052W AFG1 1-1530 ATPase family gene #17 YER061C 303 bp YER061C CEM1 1-1329 Protein homologous to beta-keto-acyl synthase #18 YER141W 223 bp YER141W COX15 1-1461 cytochrome oxidase assembly factor #19 YER153C_YER154W 214 bp YER153C pet122 1-765 translational activator of cytochrome c oxidase subunit III YER154W oxa1 1-1209 #20 YFR033C 250 bp YFR033C QCR6 1-444 ubiquinol-cytochrome c oxidoreductase subunit 6 (17 kDa) #21 YGL120C_YGL119W 504 bp YGL120C PRP43 1-2304 YGL119W ABC1 1-1506 multicopy suppressor of a cytochrome b mRNA translation defect, essential for the electron transfer in the bc1 complex #22 YGL187C 500 bp YGL187C COX4 1-468 subunit IV of cytochrome c oxidase #23 YGL191W 500 bp YGL191W COX13 1-390 subunit VIa of cytochrome c oxidase, may specifically interact with ATP #24 YGL226C-A_YGL226W 181 bp YGL226C-A OST5 1-21, 171-410 9.5-kDa zeta subunit of oligosaccharyltransferase complex YGL226W 1-372 #25 YGR008C 500 bp YGR008C STF2 1-255 #26 YGR062C 237 bp YGR062C COX18 1-951 #27 YGR112W 327 bp YGR112W SHY1 1-1170 mitochondrial protein with homology to the mammalian SURF-1 gene #28 YGR174C 500 bp YGR174C CBP4 1-513 Essential for the expression and activity of ubiquinol-cytochrome c reductase #29 YGR183C 424 bp YGR183C qcr9 1-3, 217-414 7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex #30 YGR207C_YGR208W 254 bp YGR207C 1-786 YGR208W ser2 1-930 phosphoserine phosphatase #31 YHR001W-A 457 bp YHR001W-A QCR10 1-6, 70-297 8.5 kDa subunit of the ubiqunol-cytochrome c oxidoreductase complex #32 YHR051W 401 bp YHR051W COX6 1-447 subunit VI of cytochrome c oxidase #33 YIL043C 67 bp YIL043C CBR1 1-969 cytochrome b reductase #34 YIL111W 375 bp YIL111W COX5b 1-1, 90-544 Cytochrome-c oxidase chain Vb #35 YJL166W 361 bp YJL166W QCR8 1-285 Ubiquinol cytochrome-c reductase subunit 8 (11 kDa protein) #36 YJR033C_YJR034W 231 bp YJR033C 1-4074 YJR034W PET191 1-327 Required for assembly of active cytochrome c oxidase #37 YJR047C_YJR048W 953 bp YJR047C ANB1 1-474 anaerobically expressed form of translation initiation factor eIF-5A YJR048W cyc1 1-330 iso-1-cytochrome c #38 YJR121W 130 bp YJR121W ATP2 1-1536 F(1)F(0)-ATPase complex beta subunit, mitochondrial #39 YKL016C_YKL015W 554 bp YKL016C ATP7 1-525 ATP synthase d subunit YKL015W put3 1-2940 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type #40 YKL055C 379 bp YKL055C 1-837 #41 YKL141W 492 bp YKL141W SDH3 1-597 succinate dehydrogenase cytochrome b #42 YKL151C_YKL150W 613 bp YKL151C 1-1014 YKL150W MCR1 1-909 NADH-cytochrome b5 reductase #43 YLL009C_YLL008W 314 bp YLL009C COX17 1-210 cysteine-rich cytoplasmic protein YLL008W DRS1 1-2259 putative ATP dependent RNA helicase #44 YLR038C 253 bp YLR038C COX12 1-252 subunit VIb of cytochrome c oxidase #45 YLR044C 500 bp YLR044C pdc1 1-1692 pyruvate decarboxylase #46 YLR295C_YLR296W 604 bp YLR295C ATP14 1-375 ATP synthase subunit h YLR296W 1-327 #47 YLR395C 269 bp YLR395C COX8 1-237 Cytochrome-c oxidase chain VIII #48 YML054C 500 bp YML054C cyb2 1-1776 Cytochrome b2 [L--lactate cytochrome-c oxidoreductase] #49 YML087C 421 bp YML087C 1-939 #50 YML125C 348 bp YML125C 1-939 #51 YML129C 381 bp YML129C COX14 1-213 mitochondrial membrane protein #52 YMR073C 162 bp YMR073C 1-606 #53 YMR089C 500 bp YMR089C YTA12 1-2478 mitochondrial membrane ATPase of the CDC48\/PAS1\/SEC18 (AAA) family #54 YMR145C 500 bp YMR145C 1-1683 #55 YMR165C 500 bp YMR165C SMP2 1-2589 #56 YMR244W 500 bp YMR244W 1-1068 #57 YMR256C 500 bp YMR256C COX7 1-183 subunit VII of cytochrome c oxidase #58 YMR282C 227 bp YMR282C AEP2 1-1743 basic, hydrophilic 67.5 kDa protein #59 YNL052W 313 bp YNL052W COX5A 1-462 Cytochrome-c oxidase chain Va #60 YNL118C_YNL117W 793 bp YNL118C PSU1 1-2913 YNL117W MLS1 1-1665 carbon-catabolite sensitive malate synthase #61 YNL237W 315 bp YNL237W YTP1 1-1380 #62 YOR064C_YOR065W 700 bp YOR064C 1-660 YOR065W CYT1 1-930 Cytochrome c1 #63 YOR221C_YOR222W 498 bp YOR221C 1-94, 296-1356 YOR222W 1-924 #64 YOR356W 500 bp YOR356W 1-1896 #65 YPL078C 500 bp YPL078C ATP4 1-735 F(1)F(0)-ATPase complex delta subunit, mitochondrial #66 YPL271W 500 bp YPL271W ATP15 1-189 nuclear gene for ATP synthase epsilon subunit #67 YPR004C 500 bp YPR004C 1-1035 #68 YPR048W 243 bp YPR048W 1-1872 #69 YPR190C_YPR191W 339 bp YPR190C RPC82 1-1965 82-kDa subunit of RNA polymerase III (C) YPR191W QCR2 1-1107 40 kDa ubiquinol cytochrome-c reductase core protein 2 #Motif 3 GCACCAATGA 0 343 0 TGGCCAATCA 1 27 1 GAACCAATGA 2 302 1 CAGCCAATCA 5 552 1 GGGCCAATCA 6 139 1 GAACCAATCA 12 75 1 TGACCAATCA 13 58 1 GGACCAATCA 14 250 1 GCGCCAACCA 20 146 0 CCACCAATGA 23 285 1 CAACCAATCA 25 484 1 GAGCCAATCA 32 112 1 CCACCAACCA 37 670 0 CAGCCAATCA 41 343 0 GGACCAACCA 41 446 1 TGACCAATCA 44 45 1 CGACCAACCA 46 149 0 GCACCAATCA 47 65 1 CGACCAATCA 49 222 0 TAGCCAATCA 57 336 0 GGGCCAATCA 59 166 0 CCACCAACCA 62 229 0 CGGCCAATGA 65 279 0 GAACCAATCA 65 308 1 GAACCAATGA 66 364 1 CAGCCAATGA 67 141 1 **********