#/mnt/gattaca/jhughes/alignace/all_motifs_3/heat_shock.ace
#0	YAL005C_YAL003W 742 bp YAL005C ssa1 1-1929 Heat shock protein of HSP70 family, cytoplasmic YAL003W EFB1 1-80, 447-987 Translation elongation factor EF-1beta, GDP\/GTP exchange factor for Tef1p\/Tef2p
#1	YBL075C 273 bp YBL075C SSA3 1-1950 member of 70 kDa heat shock protein family
#2	YBR054W 500 bp YBR054W YRO2 1-1035 Homolog to HSP30 heat shock protein Yro1p
#3	YBR067C 500 bp YBR067C TIP1 1-633 cell wall mannoprotein
#4	YBR072W 500 bp YBR072W HSP26 1-645 heat shock protein 26
#5	YBR169C 347 bp YBR169C SSE2 1-2082 HSP70 family member, highly homologous to Sse1p
#6	YCR021C 313 bp YCR021C HSP30 1-999 
#7	YDL229W 357 bp YDL229W ssb1 1-1842 Heat shock protein of HSP70 family, cytoplasmic
#8	YDR171W 500 bp YDR171W HSP42 1-1128 Similar to HSP26\; expression is regulated by stress conditions
#9	YDR258C 387 bp YDR258C HSP78 1-2436 Mitochondrial heat shock protein 78 kDa
#10	YDR519W 263 bp YDR519W fkb2 1-408 FKBP (FK506 binding protein) 13\; peptidylprolyl cis-trans isomerase activity
#11	YER103W 500 bp YER103W SSA4 1-1929 member of 70 kDa heat shock protein family
#12	YFL015C_YFL014W 292 bp YFL015C  1-495  YFL014W HSP12 1-330 12 kDa heat shock protein
#13	YFL016C 232 bp YFL016C MDJ1 1-1536 DnaJ homolog involved in mitochondrial biogenesis and protein folding
#14	YGR088W 500 bp YGR088W CTT1 1-1722 cytoplasmic catalase T
#15	YHR057C 153 bp YHR057C CYP2 1-618 Peptidylprolyl isomerase (cyclophilin) ER or secreted
#16	YJL035C_YJL034W 325 bp YJL035C  1-753  YJL034W KAR2 1-2049 Homologue of mammalian BiP (GPR78) protein\; member of the HSP70 gene family
#17	YJL159W 500 bp YJL159W  1-933 
#18	YJR045C_YJR046W 445 bp YJR045C ssc1 1-1965 Mitochondrial matrix protein involved in protein import\; subunit of SceI endonuclease YJR046W  1-1815 
#19	YLL024C 500 bp YLL024C SSA2 1-1920 member of 70 kDa heat shock protein family
#20	YLL026W 467 bp YLL026W hsp104 1-2727 heat shock protein 104
#21	YLL039C 500 bp YLL039C UBI4 1-1146 ubiquitin
#22	YLR259C_YLR260W 841 bp YLR259C HSP60 1-1719 heat shock protein 60\; chaperonin protein YLR260W LCB5 1-2064 long chain base kinase
#23	YMR186W 384 bp YMR186W HSC82 1-2118 constitutively expressed heat shock protein
#24	YNL007C_YNL006W 501 bp YNL007C sis1 1-1059 sit4 suppressor, dnaJ homolog YNL006W LST8 1-912 
#25	YNL064C_YNL063W 660 bp YNL064C ydj1 1-1230 yeast dnaJ homolog (nuclear envelope protein)\; heat shock protein YNL063W  1-945 
#26	YOR020C 500 bp YOR020C HSP10 1-321 10 kDa mitochondrial heat shock protein
#27	YOR027W 246 bp YOR027W STI1 1-1770 Heat shock protein also induced by canavanine and entry into stationary phase
#28	YOR125C 112 bp YOR125C CAT5 1-819 may encode a protein involved in one or more monoxygenase or hydroxylase steps of ubiquinone biosynthesis
#29	YPL106C 500 bp YPL106C SSE1 1-2082 HSP70 family member, highly homologous to Ssa1p and Sse2p
#30	YPL240C_YPL239W 858 bp YPL240C hsp82 1-2130 heat shock protein YPL239W YAR1 1-603 YAR1 encodes a 200-amino-acid protein with two ANK repeat motifs and an acidic C terminus rich in PEST-like sequences

#Motif 2
TTCTAGAATGTTC	0	346	1
TTCTAGAACATTC	9	145	0
TTCTAGAAGATTC	29	314	1
TTCTGGAAATTTC	16	125	1
TTCTAGAACATTC	19	267	1
TTCTAGAAAATTC	20	170	0
TTCTAGAACGTTC	21	116	1
TTCTGGAAAATTC	22	197	1
TTCTAGAAATTTC	26	340	0
TTCTGGAAGGTTC	8	257	1
TTCTGGAACGTTC	24	331	1
TTCTGGAATGTTC	27	30	0
TTCCAGAACGTTC	0	248	0
TTCTAGAAGTTCC	11	247	1
TTCTCGAACTTCC	23	199	1
TTCTAGAACGTCC	5	110	1
TTCGTGAAGATTC	27	4	1
TTCCTGAAAATCC	28	74	0
TTCTATAACTTTC	1	84	0
TTCCATAAGGTTC	11	262	0
TTCTCGAAGATAC	0	133	1
TTCTGCAAGATTC	22	581	1
TTCGTTAAATTTC	29	296	0
TTCGGTAAGCTTC	2	41	0
TTCTAGCAGATCC	27	127	0
TTCTAGAAAGATC	4	146	1
TTCTTTCACCTTC	23	172	0
TTCTCGAAGTTTT	19	253	1
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