#/mnt/gattaca/jhughes/alignace/all_motifs_3/aminoacid_biosynthesis.ace
#0	YAL012W 441 bp YAL012W cys3 1-1185 cystathionine gamma-lyase
#1	YBR084W 424 bp YBR084W mis1 1-2928 mitochondrial C1-tetrahydroflate synthase
#2	YBR115C 272 bp YBR115C lys2 1-4179 alpha aminoadipate reductase
#3	YBR117C 500 bp YBR117C TKL2 1-2046 transketolase, homologous to tkl1
#4	YBR166C 267 bp YBR166C tyr1 1-1359 Prephenate dehydrogenase (NADP+)
#5	YBR213W 463 bp YBR213W met8 1-825 
#6	YBR248C 416 bp YBR248C his7 1-1659 glutamine amidotransferase:cyclase
#7	YBR249C 500 bp YBR249C ARO4 1-1113 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase isoenzyme
#8	YBR294W 500 bp YBR294W SUL1 1-2580 Putative sulfate permease
#9	YCL009C 500 bp YCL009C ILV6 1-930 Acetolactate synthase regulatory subunit
#10	YCL018W 351 bp YCL018W leu2 1-1095 beta-IPM (isopropylmalate) dehydrogenase
#11	YCL030C 265 bp YCL030C his4 1-2400 histidinol dehydrogenase
#12	YCR053W 251 bp YCR053W thr4 1-1545 threonine synthase
#13	YDL131W 500 bp YDL131W LYS21 1-1323 homocitrate synthase, highly homologous to YDL182W
#14	YDL171C_YDL170W 677 bp YDL171C GLT1 1-6438 Glutamate synthase (NADPH) YDL170W UGA3 1-1587 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type
#15	YDL182W 500 bp YDL182W LYS20 1-1287 homocitrate synthase, highly homologous to YDL131W
#16	YDR006C_YDR007W 594 bp YDR006C  1-2706  YDR007W trp1 1-675 n-(5'-phosphoribosyl)-anthranilate isomerase
#17	YDR035W 500 bp YDR035W ARO3 1-1113 DAHP synthase\; a.k.a. phospho-2-dehydro-3-deoxyheptonate aldolase, phenylalanine-inhibited\; phospho-2-keto-3-deoxyheptonate aldolase\; 2-dehydro-3-deoxyphosphoheptonate aldolase\; 3-deoxy-D-arabine-heptulosonate-7-phosphate synthase
#18	YDR111C 500 bp YDR111C  1-1524 
#19	YDR127W 239 bp YDR127W aro1 1-4767 pentafunctional arom polypeptide (contains: 3-dehydroquinate synthase, 3-dehydroquinate dehydratase (3-dehydroquinase), shikimate 5-dehydrogenase, shikimate kinase, and epsp synthase)
#20	YDR233C_YDR234W 771 bp YDR233C  1-888  YDR234W lys4 1-2082 homoaconitase
#21	YDR300C_YDR301W 560 bp YDR300C pro1 1-1287 gamma-glutamyl kinase YDR301W CFT1 1-4074 Component of pre-mRNA cleavage factor II (CFII)\; 150-kDa protein associated with polyadenylation factor 1 (PF I)
#22	YDR354W 488 bp YDR354W trp4 1-1143 anthranilate phosphoribosyl transferase
#23	YEL039C_YEL038W 442 bp YEL039C cyc7 1-342 iso-2-cytochrome c YEL038W UTR4 1-726 
#24	YER023W 200 bp YER023W pro3 1-861 delta 1-pyrroline-5-carboxylate reductase
#25	YER052C 500 bp YER052C hom3 1-1584 Aspartate kinase (L-aspartate 4-P-transferase) (EC 2.7.2.4)
#26	YER055C 500 bp YER055C his1 1-894 ATP phosphoribosyltransferase
#27	YER069W 500 bp YER069W arg5,6 1-2592 N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase
#28	YER081W 500 bp YER081W  1-1410 
#29	YER085C_YER086W 336 bp YER085C  1-522  YER086W ilv1 1-1731 threonine deaminase
#30	YER089C_YER090W 608 bp YER089C PTC2 1-1395 Protein phosphatase type 2C YER090W trp2 1-1524 anthranilate synthase Component I
#31	YER091C_YER092W 687 bp YER091C met6 1-2304 vitamin B12-(cobalamin)-independent isozyme of methionine synthase (also called N5-methyltetrahydrofolate homocysteine methyltransferase or 5-methyltetrahydropteroyl triglutamate homocysteine methyltransferase) YER092W  1-378 
#32	YFL018C_YFL018W-A 571 bp YFL018C LPD1 1-1500 dihydrolipoamide dehydrogenase precursor (mature protein is the E3 component of alpha-ketoacid dehydrogenase complexes) YFL018W-A SNP2 1-234 snRNP G protein (the homologue of the human Sm-G)
#33	YFL030W 500 bp YFL030W  1-1158 
#34	YFR025C 173 bp YFR025C his2 1-1008 Histidinolphosphatase
#35	YFR030W 338 bp YFR030W met10 1-3108 subunit of assimilatory sulfite reductase
#36	YFR055W 500 bp YFR055W  1-1023 
#37	YGL009C 500 bp YGL009C leu1 1-2340 isopropylmalate isomerase
#38	YGL026C 228 bp YGL026C trp5 1-2124 tryptophan synthetase
#39	YGL125W 380 bp YGL125W met13 1-1800 putative methylenetetrahydrofolate reductase (mthfr)
#40	YGL148W 500 bp YGL148W aro2 1-1131 Chorismate synthase
#41	YGL154C_YGL153W 176 bp YGL154C lys5 1-819 aminoadipate-semialdehyde dehydrogenase small subunit (alpha-aminoadipate reductase) YGL153W PEX14 1-1026 Peroxisomal peripheral membrane protein (peroxin) involved in import of peroxisomal matrix proteins
#42	YGL184C 500 bp YGL184C  1-1398 
#43	YGR012W 335 bp YGR012W  1-1182 
#44	YGR019W 500 bp YGR019W uga1 1-1416 gamma-aminobutyrate (GABA) transaminase (4-aminobutyrate aminotransferase)
#45	YGR055W 500 bp YGR055W MUP1 1-1725 high affinity methionine permease
#46	YGR124W 500 bp YGR124W ASN2 1-1719 asparagine synthetase
#47	YGR154C_YGR155W 674 bp YGR154C  1-1071  YGR155W CYS4 1-1524 Cystathionine beta-synthase
#48	YGR204W 250 bp YGR204W ade3 1-2841 C1-5,6,7,8-tetrahydrofolate synthase
#49	YGR207C_YGR208W 254 bp YGR207C  1-786  YGR208W ser2 1-930 phosphoserine phosphatase
#50	YHL037C_YHL036W 61 bp YHL037C  1-480  YHL036W MUP3 1-1641 very low affinity methionine permease
#51	YHR018C 491 bp YHR018C arg4 1-1392 argininosuccinate lyase
#52	YHR024C_YHR025W 245 bp YHR024C MAS2 1-1449 53 kDa subunit of the mitochondrial processing protease YHR025W thr1 1-1074 homoserine kinase
#53	YHR033W 458 bp YHR033W  1-1272 
#54	YHR037W 216 bp YHR037W put2 1-1728 delta-1-pyrroline-5-carboxylate dehydrogenase
#55	YHR068W 320 bp YHR068W DYS1 1-1164 Deoxyhypusine synthase
#56	YHR069C_YHR070W 222 bp YHR069C RRP4 1-1080 3->5 exoribonuclease\; Component of the exosome 3->5 exonuclease complex with Rrp41p, Rrp42p, Rrp43p and Dis3p (Rrp44p). YHR070W  1-1500 
#57	YHR112C_YHR113W 673 bp YHR112C  1-1137  YHR113W  1-1473 
#58	YHR208W 500 bp YHR208W BAT1 1-1182 branched-chain amino acid transaminase, highly similar to mammalian ECA39, which is regulated by the oncogene myc
#59	YIL020C_YIL019W 272 bp YIL020C his6 1-786  YIL019W  1-1041 
#60	YIL074C 446 bp YIL074C  1-1410 
#61	YIL094C 357 bp YIL094C  1-1116 
#62	YIL116W 500 bp YIL116W his5 1-1158 histidinol-phosphate aminotransferase
#63	YIR034C 289 bp YIR034C lys1 1-1122 saccharopine dehydrogenase
#64	YJL072C_YJL071W 269 bp YJL072C  1-642  YJL071W ARG2 1-1725 Acetylglutamate Synthase
#65	YJL088W 77 bp YJL088W arg3 1-1323 Ornithine carbamoyltransferase
#66	YJR010W 500 bp YJR010W met3 1-1536 ATP sulfurylase
#67	YJR016C 312 bp YJR016C ilv3 1-1758 dihydroxyacid dehydratase
#68	YJR109C_YJR110W 673 bp YJR109C CPA2 1-3357 carbamyl phosphate synthetase YJR110W  1-2067 
#69	YJR130C_YJR131W 506 bp YJR130C  1-1920  YJR131W MNS1 1-1650 specific alpha-mannosidase
#70	YJR137C 500 bp YJR137C ECM17 1-4329 ExtraCellular Mutant
#71	YJR139C 225 bp YJR139C hom6 1-1080 Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase)
#72	YJR148W 471 bp YJR148W BAT2 1-1131 Branched-Chain Amino Acid Transaminase
#73	YKL001C 500 bp YKL001C met14 1-609 adenylylsulfate kinase
#74	YKL106W 465 bp YKL106W AAT1 1-1356 aspartate aminotransferase, mitochondrial
#75	YKL192C_YKL191W 497 bp YKL192C  1-378  YKL191W DPH2 1-1605 
#76	YKL211C 500 bp YKL211C trp3 1-1455 anthranilate synthase Component II and indole-3-phosphate (multifunctional enzyme)
#77	YKL215C 394 bp YKL215C  1-3861 
#78	YLL059C_YLL058W 588 bp YLL059C  1-507  YLL058W  1-1728 
#79	YLR027C 500 bp YLR027C AAT2 1-1299 aspartate aminotransferase, cytosolic
#80	YLR089C_YLR090W 685 bp YLR089C  1-1779  YLR090W XDJ1 1-1380 Homolog of E. coli DnaJ, closely related to Ydj1p
#81	YLR092W 365 bp YLR092W SUL2 1-2682 high affinity sulfate permease
#82	YLR142W 411 bp YLR142W put1 1-1431 proline oxidase
#83	YLR172C_YLR173W 258 bp YLR172C DPH5 1-903 S-adenosylmethionine (AdoMet)-dependent methyltransferase of diphthamide biosynthesis YLR173W  1-1827 
#84	YLR179C_YLR180W 548 bp YLR179C  1-606  YLR180W sam1 1-1149 S-adenosylmethionine synthetase
#85	YLR303W 351 bp YLR303W MET17 1-1335 O-Acetylhomoserine-O-Acetylserine Sulfhydralase
#86	YLR355C 500 bp YLR355C ilv5 1-1188 acetohydroxyacid reductoisomerase
#87	YLR437C_YLR438W 477 bp YLR437C  1-402  YLR438W car2 1-1275 ornithine aminotransferase
#88	YML083C_YML082W 811 bp YML083C  1-1257  YML082W  1-1950 
#89	YML097C_YML096W 218 bp YML097C VPS9 1-1356 required for Golgi to vacuole trafficking, shares similarity to mammalian ras inhibitors YML096W  1-1578 
#90	YMR062C_YMR063W 697 bp YMR062C ECM40 1-1326 acetylornithine acetyltransferase YMR063W RIM9 1-720 
#91	YMR108W 500 bp YMR108W ilv2 1-2064 acetolactate synthase
#92	YMR250W 500 bp YMR250W  1-1758 
#93	YNL104C_YNL103W 980 bp YNL104C LEU4 1-1860 alpha-isopropylmalate synthase (2-Isopropylmalate Synthase) YNL103W met4 1-2019 member of the leucine zipper family of transcriptional activators
#94	YNL277W 500 bp YNL277W met2 1-1461 homoserine O-trans-acetylase
#95	YNL316C 146 bp YNL316C pha2 1-1107 prephenate dehydratase
#96	YNR050C 500 bp YNR050C lys9 1-1341 Saccharopine dehydrogenase (NADP+, L-glutamate forming) (saccharopine reductase) (EC 1.5.1.10)
#97	YOL058W 500 bp YOL058W arg1 1-1263 arginosuccinate synthetase
#98	YOL064C 215 bp YOL064C MET22 1-1074 3'(2')5'-bisphosphate nucleotidase
#99	YOL140W 220 bp YOL140W arg8 1-1272 Acetylornithine aminotransferase
#100	YOR108W 500 bp YOR108W  1-1815 
#101	YOR184W 95 bp YOR184W ser1 1-1188 phosphoserine transaminase
#102	YOR201C_YOR202W 237 bp YOR201C pet56 1-1239 Ribose methyltransferase for mitochondrial 21S rRNA YOR202W his3 1-663 imidazoleglycerol-phosphate dehydratase
#103	YOR236W 500 bp YOR236W dfr1 1-636 dihydrofolate reductase
#104	YOR241W 250 bp YOR241W  1-1647 
#105	YOR280C 476 bp YOR280C  1-801 
#106	YOR303W 56 bp YOR303W cpa1 1-1236 Carbamoyl phosphate synthetase, arginine specific
#107	YOR323C 326 bp YOR323C pro2 1-1371 gamma-glutamyl phosphate reductase
#108	YPR035W 500 bp YPR035W gln1 1-1113 glutamine synthetase
#109	YPR060C 345 bp YPR060C aro7 1-771 chorismate mutase
#110	YPR074C 500 bp YPR074C TKL1 1-2043 Transketolase 1
#111	YPR145W 500 bp YPR145W ASN1 1-1719 asparagine synthetase
#112	YPR167C_YPR168W 443 bp YPR167C MET16 1-786 3'phosphoadenylylsulfate reductase YPR168W NUT2 1-474 

#Motif 8
GCCGGTTCCGC	10	153	0
CCCGGTAAAGG	13	77	0
GCCACTCCCGG	15	79	1
GCCGGTAAAGG	31	427	0
GCCGGTCCCGG	37	283	0
GCCGGTTACGG	37	313	0
CCCGCTACCGG	39	58	0
GCCGGTACCGG	58	352	1
CCCGGTTCCGC	67	133	0
GCCGGTTGAGG	81	175	1
TCCGGTACCGG	86	122	1
GCCGCTAACGG	87	290	0
GCCGCTAAGGG	87	331	0
GCCGGTACCGG	91	31	1
GCCGGTCCCGC	93	439	1
TCCGGTAACGG	100	222	1
GCCGCTCGCGG	109	13	1
GCCGCTGCGGG	110	108	1
****** ****