#/mnt/gattaca/jhughes/alignace/all_motifs_3/peroxisomal_organization.ace
#0	YAL054C_YAL053W 876 bp YAL054C acs1 1-2142 inducible acetyl-coenzyme A synthetase YAL053W  1-2352 
#1	YBR204C_YBR205W 240 bp YBR204C  1-1128  YBR205W KTR3 1-1215 Putative alpha-1,2-mannosyltransferase
#2	YBR222C 311 bp YBR222C FAT2 1-1632 
#3	YCR005C 201 bp YCR005C CIT2 1-1383 non-mitochondrial citrate synthase
#4	YDL078C 500 bp YDL078C MDH3 1-1032 malate dehydrogenase
#5	YDR142C 441 bp YDR142C PEX7 1-1128 Member of beta-transducin-related (WD-40) protein family
#6	YDR256C 309 bp YDR256C CTA1 1-1548 catalase A
#7	YDR329C_YDR330W 276 bp YDR329C PEX3 1-1326 48-kDa peroxisomal integral membrane protein YDR330W  1-1503 
#8	YER015W 321 bp YER015W FAA2 1-2235 Acyl-CoA synthetase (fatty acid activator 2)
#9	YGL154C_YGL153W 176 bp YGL154C lys5 1-819 aminoadipate-semialdehyde dehydrogenase small subunit (alpha-aminoadipate reductase) YGL153W PEX14 1-1026 Peroxisomal peripheral membrane protein (peroxin) involved in import of peroxisomal matrix proteins
#10	YGL206C_YGL205W 653 bp YGL206C chc1 1-4962 presumed vesicle coat protein YGL205W POX1 1-2247 fatty-acyl coenzyme A oxidase
#11	YGR132C_YGR133W 443 bp YGR132C PHB1 1-864 mitochondrial protein, prohibitin homolog\; similar to S. cerevisiae Phb2p YGR133W PEX4 1-552 Member of ubiquitin-conjugating protein family
#12	YIL160C_YIL159W 380 bp YIL160C pot1 1-1254 peroxisomal 3-oxoacyl CoA thiolase YIL159W BNR1 1-4128 Bni1p-related protein, helps regulate reorganization of the actin cytoskeleton, potential target of Rho4p
#13	YIR031C 350 bp YIR031C dal7 1-1665 Malate synthase 2
#14	YJL212C_YJL210W 669 bp YJL212C  1-2400  YJL210W PEX2 1-816 CH3HC4 zinc-binding integral peroxisomal membrane protein
#15	YJR019C 273 bp YJR019C TES1 1-1050 peroxisomal acyl-CoA thioesterase
#16	YKL188C 497 bp YKL188C PXA2 1-2562 peroxisomal ABC transporter 2
#17	YKR009C 500 bp YKR009C FOX2 1-2703 peroxisomal multifunctional beta-oxidation protein
#18	YLR027C 500 bp YLR027C AAT2 1-1299 aspartate aminotransferase, cytosolic
#19	YLR108C_YLR109W 656 bp YLR108C  1-1458  YLR109W  1-531 
#20	YLR191W 500 bp YLR191W PEX13 1-1161 Peroxisomal membrane protein that contains Src homology 3 (SH3) domain
#21	YLR251W 442 bp YLR251W  1-594 
#22	YLR284C_YLR285W 319 bp YLR284C EHD1 1-843 Peroxisomal enoyl-CoA hydratase YLR285W  1-786 
#23	YML042W 500 bp YML042W CAT2 1-2013 Carnitine O-acetyltransferase, peroxisomal and mitochondrial
#24	YMR026C_YMR027W 441 bp YMR026C PEX12 1-1200 C3HC4 zinc-binding integral peroxisomal membrane protein YMR027W HRT2 1-1413 
#25	YNL009W 460 bp YNL009W IDP3 1-1263 peroxisomal NADP-dependent isocitrate dehydrogenase
#26	YNL118C_YNL117W 793 bp YNL118C PSU1 1-2913  YNL117W MLS1 1-1665 carbon-catabolite sensitive malate synthase
#27	YNL204C_YNL202W 291 bp YNL204C SPS18 1-903 sporulation-specific protein YNL202W SPS19 1-888 peroxisomal 2,4-dienoyl-CoA reductase
#28	YNL214W 186 bp YNL214W PEX17 1-600 23 kDa peroxisome associated protein, binds Pex14p
#29	YNL329C 200 bp YNL329C PEX6 1-3093 Member of the AAA-protein family that includes NSFp and PEX1p
#30	YOL044W 347 bp YOL044W PEX15 1-1152 44 kDa phosphorylated integral peroxisomal membrane protein
#31	YOL147C_YOL146W 94 bp YOL147C PEX11 1-711 Peroxisomal membrane protein YOL146W  1-711 
#32	YOR180C_YOR181W 771 bp YOR180C EHD2 1-816 Peroxisomal enoyl-CoA hydratase YOR181W LAS17 1-1902 Actin assembly factor
#33	YPL148C_YPL147W 427 bp YPL148C PPT2 1-534 Phosphopantetheine YPL147W PXA1 1-2613 Pxa1p and Pxa2p appear to be subunits of a peroxisomal ATP-binding cassette transporter necessary for transport of long-chain fatty acids into peroxisomes

#Motif 3
CGGAGTTAACGCCGGTCCGGCCG	4	158	1
CGGCTTTAACAAATATAAACTCC	6	100	1
CGGCGTTAAAGACTGACGGTCCG	8	135	0
CGGAGTTTAATCAACTAATACCG	10	341	0
CGGTCATTAGCGGCTAATAGCCG	10	378	1
CGGTGTTAATACTATTATCCCCG	12	165	1
CGGTGTTTATGCCGTCTCTTCCG	15	143	0
CGGCGTTAATTACAACTATCACC	16	225	1
CGGACTTAAAACTAGGCTTCCGG	17	195	0
CGGAAATAAAAAAAATTTGGCCC	20	345	0
CTGATATAATTAATATTAGTCCG	20	376	0
CGGGCATAAGAAATATTATTCCG	22	150	0
CGGGGATAAGCAGTCATTTGCCC	23	228	0
CGGTATTAAACTTTAATATTTCG	25	13	0
CGGCATTAAGCATGCTAAATCCG	25	148	0
CGGCGTTAAGTATATCAAACTCC	27	134	1
CGGCGATAATCGTCAACACTTCC	29	56	1
CGGCGATAAGCCGCTCAGCGCAG	30	189	0
CGGGCTTAACCGCATAAGTTTCG	33	256	1
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