#/mnt/gattaca/jhughes/alignace/all_motifs_3/nuclear_organization.ace
#0	YAL001C 289 bp YAL001C TFC3 1-70, 161-3573 transcription factor tau (TFIIIC) subunit 138
#1	YAL020C_YAL019W 303 bp YAL020C ATS1 1-1002  YAL019W FUN30 1-3396 Shows homology to SNF2 transcriptional regulator
#2	YAL021C 254 bp YAL021C ccr4 1-2514 95 kDa containng leucine rich tandem repeats
#3	YAL025C 419 bp YAL025C mak16 1-921 putative nuclear protein
#4	YAL051W 313 bp YAL051W YAF1 1-3189 
#5	YAR007C_YAR008W 345 bp YAR007C RFA1 1-1866 69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1 YAR008W SEN34 1-828 34kDa subunit of the tetrameric tRNA splicing endonuclease
#6	YBL003C_YBL002W 699 bp YBL003C HTA2 1-399 Histone H2A (HTA1 and HTA2 code for nearly identical proteins) YBL002W HTB2 1-396 Histone H2B (HTB1 and HTB2 code for nearly identical proteins)
#7	YBL006C_YBL005W 340 bp YBL006C  1-438  YBL005W pdr3 1-2931 Zinc-finger transcription factor related to Pdr1p
#8	YBL008W 428 bp YBL008W HIR1 1-2523 putative repressor protein homologous to yeast Tup1p and mammalian retinal transducin\; contains nuclear targeting signal
#9	YBL014C_YBL013W 307 bp YBL014C RRN6 1-2685 member of yeast Pol I core factor (CF) also composed of Rrn11p, Rrn7p and TATA-binding protein YBL013W  1-1182 
#10	YBL021C_YBL020W 306 bp YBL021C HAP3 1-435 transcriptional activator protein of CYC1 YBL020W rft1 1-1725 67 kDa integral membrane protein
#11	YBL023C 347 bp YBL023C mcm2 1-2607 
#12	YBL024W 500 bp YBL024W  1-2055 
#13	YBL025W 442 bp YBL025W RRN10 1-438 Upstream activation factor subunit
#14	YBL026W 500 bp YBL026W SNP3 1-54, 183-416 snRNA-associated protein of the Sm class
#15	YBL035C 237 bp YBL035C POL12 1-2118 B subunit of DNA polymerase alpha-primase complex
#16	YBL055C_YBL054W 759 bp YBL055C  1-1257  YBL054W  1-1578 
#17	YBL064C_YBL063W 729 bp YBL064C  1-786  YBL063W KIP1 1-3336 kinesin related protein
#18	YBL066C 255 bp YBL066C SEF1 1-3174 putative transcription factor
#19	YBL074C 500 bp YBL074C aar2 1-1068 splices pre mRNA of the MATa1 cistron
#20	YBL080C_YBL079W 563 bp YBL080C PET112 1-1626 62-kDa protein YBL079W NUP170 1-4509 Nucleoporin highly similar to Nup157p and to mammalian Nup155p (nup170 mutant can be complemented with NUP155)
#21	YBL084C 267 bp YBL084C cdc27 1-2277 Protein required for cell cycle
#22	YBL093C 500 bp YBL093C ROX3 1-663 nuclear protein
#23	YBL103C_YBL102W 562 bp YBL103C RTG3 1-1461 bHLH\/Zip transcription factor which regulates CIT2 gene expression YBL102W SFT2 1-648 
#24	YBR009C_YBR010W 646 bp YBR009C HHF1 1-312 Histone H4 (HHF1 and HHF2 code for identical proteins) YBR010W HHT1 1-411 Histone H3 (HHT1 and HHT2 code for identical proteins)
#25	YBR034C 292 bp YBR034C HMT1 1-1047 nuclear protein arginine methyltransferase (mono- and asymmetrically dimethylating enzyme)
#26	YBR049C 364 bp YBR049C REB1 1-2433 RNA polymerase I enhancer binding protein
#27	YBR055C 301 bp YBR055C prp6 1-2700 RNA splicing factor
#28	YBR060C 500 bp YBR060C RRR1 1-1863 origin recognition complex subunit 2
#29	YBR072W 500 bp YBR072W HSP26 1-645 heat shock protein 26
#30	YBR081C 500 bp YBR081C spt7 1-3999 transcription factor, member of the histone acetyltransferase SAGA complex
#31	YBR083W 500 bp YBR083W tec1 1-1461 transcriptional regulator of Ty1 expression
#32	YBR086C_YBR087W 723 bp YBR086C  1-2841  YBR087W RFC5 1-1065 Subunit 5 of Replication Factor C\; homologous to human RFC 38 kDa subunit
#33	YBR088C 423 bp YBR088C pol30 1-777 profilerating cell nuclear antigen (PCNA)\; accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis
#34	YBR112C 500 bp YBR112C cyc8 1-2901 General repressor of transcription (with Tup1p)\; mediates glucose repression
#35	YBR114W 500 bp YBR114W rad16 1-2373 Nucleotide excision repair protein with DNA helicase domain of Snf2p family
#36	YBR119W 290 bp YBR119W MUD1 1-8, 98-986 U1 snRNP A protein
#37	YBR123C 500 bp YBR123C TFC1 1-1950 transcription factor tau (TFIIIC) subunit 95
#38	YBR141C_YBR142W 278 bp YBR141C  1-1014  YBR142W mak5 1-2322 Probable pre-mRNA splicing RNA-helicase of the DEAD box family
#39	YBR150C_YBR151W 534 bp YBR150C  1-3285  YBR151W  1-951 
#40	YBR154C_YBR155W 761 bp YBR154C rpb5 1-648 25-kDa RNA polymerase subunit (common to polymerases I, II and III) YBR155W CNS1 1-1158 
#41	YBR182C 500 bp YBR182C SMP1 1-1359 
#42	YBR185C_YBR186W 593 bp YBR185C MBA1 1-837  YBR186W PCH2 1-1611 Putative ATPase
#43	YBR198C_YBR199W 385 bp YBR198C TAF90 1-2397 Component of the TAF(II) complex (TBP-associated protein complex) required for activated transcription by RNA polymerase II YBR199W KTR4 1-1395 Putative alpha-1,2-mannosyltransferase
#44	YBR202W 500 bp YBR202W CDC47 1-2538 Essential for initiation of DNA replication
#45	YBR236C_YBR237W 275 bp YBR236C ABD1 1-1311 RNA (guanine-7-)methyltransferase (cap methyltransferase) YBR237W PRP5 1-2550 RNA helicase homolog
#46	YBR239C 500 bp YBR239C  1-1590 
#47	YBR240C 500 bp YBR240C THI2 1-1353 Transcriptional activator of thiamine biosynthetic genes
#48	YBR247C 351 bp YBR247C ENP1 1-1452 Putative 57 kDa protein with an apparent MW of 70 kDa by SDS-PAGE
#49	YBR253W 215 bp YBR253W SRB6 1-366 transcription factor, part of Srb\/Mediator complex
#50	YBR256C_YBR257W 782 bp YBR256C rib5 1-717 Riboflavin synthase alpha-chain YBR257W POP4 1-840 
#51	YBR275C 500 bp YBR275C RIF1 1-5751 RAP1-interacting factor, involved in establishment of repressed chromatin
#52	YBR276C_YBR278W 250 bp YBR276C PPS1 1-2424 dual specificity protein phosphatase YBR278W DPB3 1-606 C and C' subunits of DNA polymerase II
#53	YBR279W 357 bp YBR279W PAF1 1-1338 
#54	YBR288C_YBR289W 203 bp YBR288C APM3 1-1452 clathrin associated protein medium chain YBR289W SNF5 1-2718 transcriptional activator
#55	YBR297W 500 bp YBR297W MAL33 1-1407 
#56	YCL011C 500 bp YCL011C GBP2 1-1284 Protein with RNA recognition motifs
#57	YCL017C 351 bp YCL017C NFS1 1-1494 
#58	YCL029C_YCL028W 228 bp YCL029C BIK1 1-1323 Microtubule-associated protein required for microtubule function during mating and mitosis YCL028W  1-1218 
#59	YCL054W 500 bp YCL054W  1-2175 
#60	YCL056C_YCL055W 569 bp YCL056C  1-435  YCL055W KAR4 1-1008 May assist Ste12p in pheromone-dependent expression of KAR3 and CIK1
#61	YCR014C 283 bp YCR014C POL4 1-1749 DNA polymerase IV
#62	YCR018C 500 bp YCR018C srd1 1-678 involved in the processing of pre-rRNA to mature rRNA
#63	YCR039C_YCR040W 263 bp YCR039C alpha2 1-633  YCR040W alpha1 1-528 transcripton factor involved in the regulation of the alpha-specific genes
#64	YCR042C 500 bp YCR042C TSM1 1-4224 TATA binding protein-associated factor (TAF)
#65	YCR052W 254 bp YCR052W RSC6 1-1452 a subunit of RSC, a fifteen-protein chromatin remodeling complex and related to the Swi\/snf Complex.
#66	YCR065W 500 bp YCR065W HCM1 1-1599 Dosage-dependent suppressor of cmd1-1 mutation\; shows homology to fork head family of DNA-binding proteins
#67	YCR066W 500 bp YCR066W RAD18 1-1464 Zn finger protein, putative ATPase
#68	YCR072C 288 bp YCR072C  1-1548 
#69	YCR081W 149 bp YCR081W SRB8 1-3681 activation mediator subcomplex of RNA polymerase I holoenzyme
#70	YCR084C_YCR085W 463 bp YCR084C tup1 1-2142 glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins YCR085W  1-354 
#71	YCR093W 209 bp YCR093W cdc39 1-6327 nuclear protein that negatively regulates basal transcription
#72	YCR096C_YCR097WB 296 bp YCR096C a2 1-360  YCR097WB a1 1-105, 160-405, 458-487 Homeobox-domain containing protein which, together with alpha2, represses transcription of haploid-specific genes in diploid cells
#73	YCR106W 500 bp YCR106W  1-2499 
#74	YDL003W 500 bp YDL003W MCD1 1-1701 
#75	YDL008W 248 bp YDL008W APC11 1-498 subunit of the anaphase promoting complex (APC)
#76	YDL015C_YDL014W 429 bp YDL015C  1-933  YDL014W NOP1 1-984 nucleolar protein, homologous to mammalian fibrillarin
#77	YDL018C_YDL017W 698 bp YDL018C  1-678  YDL017W cdc7 1-1524 serine\/threonine protein kinase
#78	YDL020C 500 bp YDL020C RPN4 1-1596 involved in ubiquitin degradation pathway
#79	YDL029W 210 bp YDL029W ARP2 1-22, 146-1299 actin-related protein
#80	YDL030W 332 bp YDL030W PRP9 1-1593 RNA splicing factor
#81	YDL042C 428 bp YDL042C sir2 1-1689 regulator of silent mating loci
#82	YDL043C 276 bp YDL043C prp11 1-801 
#83	YDL056W 456 bp YDL056W MBP1 1-2502 transcription factor
#84	YDL059C_YDL058W 711 bp YDL059C RAD59 1-717  YDL058W USO1 1-5373 Integrin analogue gene
#85	YDL065C_YDL064W 185 bp YDL065C PEX19 1-1053 40 kDa farnesylated protein associated with peroxisomes YDL064W  1-38, 149-584 
#86	YDL101C 263 bp YDL101C dun1 1-1542 protein kinase
#87	YDL103C_YDL102W 290 bp YDL103C QRI1 1-1434  YDL102W cdc2 1-3294 largest and catalytic subunit of DNA polymerase III (delta)
#88	YDL106C_YDL105W 487 bp YDL106C grf10 1-1680 Homeobox-domain containing protein which is a positive regulator of PHO5 and other genes YDL105W QRI2 1-1209 
#89	YDL109C_YDL108W 496 bp YDL109C  1-1944  YDL108W kin28 1-28, 110-1002 serine-threonine kinase
#90	YDL116W 327 bp YDL116W nup84 1-2181 Protein with homology to mammalian Nup107p
#91	YDL131W 500 bp YDL131W LYS21 1-1323 homocitrate synthase, highly homologous to YDL182W
#92	YDL140C 500 bp YDL140C rpo21 1-5202 RNA polymerase II large subunit
#93	YDL154W 277 bp YDL154W MSH5 1-2706 MutS homolog involved in chromosome exchange
#94	YDL160C_YDL159W 550 bp YDL160C DHH1 1-1521  YDL159W ste7 1-1548 MEK homolog
#95	YDL166C_YDL165W 247 bp YDL166C  1-594  YDL165W cdc36 1-576 nuclear protein that negatively regulates basal transcription
#96	YDL171C_YDL170W 677 bp YDL171C GLT1 1-6438 Glutamate synthase (NADPH) YDL170W UGA3 1-1587 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type
#97	YDL182W 500 bp YDL182W LYS20 1-1287 homocitrate synthase, highly homologous to YDL131W
#98	YDL200C 168 bp YDL200C mgt1 1-621 6-O-methylguanine-DNA methylase
#99	YDL207W 265 bp YDL207W GLE1 1-1617 Nuclear-export-signal (NES)-containing protein
#100	YDL209C_YDL208W 234 bp YDL209C  1-1020  YDL208W NHP2 1-522 HMG-like nuclear protein
#101	YDL220C_YDL219W 223 bp YDL220C cdc13 1-2775 binds to single-stranded TG1-3 telomere G-tails YDL219W  1-65, 137-524 
#102	YDL226C_YDL225W 271 bp YDL226C GCS1 1-1059 ADP-ribosylation factor GTPase-activating protein (ARF GAP) YDL225W  1-1656 
#103	YDL227C 500 bp YDL227C HO 1-1761 Homothallic switching endonuclease
#104	YDR004W 446 bp YDR004W rad57 1-1383 RecA homolog (similar to DMC1, RAD51, and RAD55), interacts with Rad 55p by two-hybrid analysis
#105	YDR006C_YDR007W 594 bp YDR006C  1-2706  YDR007W trp1 1-675 n-(5'-phosphoribosyl)-anthranilate isomerase
#106	YDR020C_YDR021W 359 bp YDR020C  1-699  YDR021W FAL1 1-1200 DEAD-box protein, putative RNA helicase
#107	YDR028C_YDR029W 220 bp YDR028C reg1 1-3045  YDR029W  1-315 
#108	YDR034C 500 bp YDR034C lys14 1-2373 Transcriptional activator of lysine pathway genes with 2-aminoadipate semialdehyde as co-inducer\; saccharopine reductase synthesis
#109	YDR052C 500 bp YDR052C DBF4 1-2115 cyclin-like kinase required for late nuclear division
#110	YDR054C 500 bp YDR054C cdc34 1-888 ubiquitin-conjugating enzyme, E2
#111	YDR067C_YDR068W 247 bp YDR067C  1-675  YDR068W DOS2 1-933 
#112	YDR069C 378 bp YDR069C DOA4 1-2781 ubiquitin isopeptidase
#113	YDR073W 500 bp YDR073W SNF11 1-510 component of SWI\/SNF global transcription activator complex
#114	YDR076W 385 bp YDR076W rad55 1-1221 RecA homolog (related to DMC1, RAD51, RAD57), interacts with Rad51p and Rad57p by two-hybrid analysis
#115	YDR081C_YDR082W 359 bp YDR081C pdc2 1-2778 Asparagine and serine-rich protein YDR082W STN1 1-1485 
#116	YDR088C 323 bp YDR088C SLU7 1-1149 involved in 3' splice site choices and 2nd step of splicing
#117	YDR097C 340 bp YDR097C MSH6 1-3729 Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs
#118	YDR113C_YDR115W 557 bp YDR113C PDS1 1-1122 42-kDa nuclear protein YDR115W  1-318 
#119	YDR117C_YDR118W 238 bp YDR117C  1-1698  YDR118W APC4 1-1959 subunit of the anaphase promoting complex (APC)
#120	YDR123C_YDR124W 846 bp YDR123C INO2 1-915 helix-loop-helix protein YDR124W  1-975 
#121	YDR138W 327 bp YDR138W hpr1 1-2259 
#122	YDR146C_YDR147W 888 bp YDR146C swi5 1-2130 transcriptional activator YDR147W  1-1605 
#123	YDR155C_YDR156W 524 bp YDR155C CPH1 1-489 cyclophilin peptidyl-prolyl cis-trans isomerase YDR156W RPA14 1-414 RNA polymerase I subunit A14
#124	YDR159W 422 bp YDR159W sac3 1-3906 Leucine permease transcriptional regulator
#125	YDR166C_YDR167W 227 bp YDR166C sec5 1-2916 107 kDa component of the Exocyst complex\; required for exocytosis. YDR167W TAF25 1-621 TFIID subunit
#126	YDR173C_YDR174W 477 bp YDR173C arg82 1-1068  YDR174W  1-741 
#127	YDR175C_YDR176W 299 bp YDR175C  1-960  YDR176W NGG1 1-2109 Involved in glucose repression of GAL4p-regulated transcription
#128	YDR180W 470 bp YDR180W SCC2 1-4482 Sister chromatid cohesion protein
#129	YDR190C_YDR191W 341 bp YDR190C  1-1392  YDR191W HST4 1-1113 Homolog of SIR2
#130	YDR192C 500 bp YDR192C NUP42 1-1293 nucleoporin
#131	YDR194C_YDR195W 652 bp YDR194C MSS116 1-1995 Mitochondrial RNA helicase of the DEAD box family YDR195W REF2 1-1602 
#132	YDR207C_YDR208W 701 bp YDR207C UME6 1-2511 Ume6p is a C6 zinc finger URS1-binding protein that is a key regulator required for both repression and induction of early meiotic genes, and for sporulation\; Ume6p rquires Ume4 for mitotic repression and interacts with and requires Ime1p and Rim11p for induction of meiosis-specific transcription YDR208W MSS4 1-2340 
#133	YDR215C_YDR216W 532 bp YDR215C  1-384  YDR216W adr1 1-3972 positive transcriptional regulator of ADH2 and peroxisomal protein genes
#134	YDR217C 300 bp YDR217C rad9 1-3930 cell cycle arrest protein
#135	YDR224C_YDR225W 817 bp YDR224C HTB1 1-396 Histone H2B (HTB1 and HTB2 code for nearly identical proteins) YDR225W HTA1 1-399 Histone H2A (HTA1 and HTA2 code for nearly identical proteins)
#136	YDR227W 416 bp YDR227W sir4 1-4077 regulator of silent mating loci
#137	YDR228C_YDR229W 978 bp YDR228C PCF11 1-1881  YDR229W  1-1362 
#138	YDR235W 293 bp YDR235W PRP42 1-1635 U1 snRNP protein that shares 50\% sequence similarity with Prp39p U1 snRNP protein and has multiple copies of the crn-like TPR motif
#139	YDR240C 198 bp YDR240C SNU56 1-1479 Snurp = Small nuclear ribonucleoprotein particle of MW 56 kDa. Associated with the U1 snRNP\; no counterpart in mammalian U1 snRNP. Serine-rich.
#140	YDR243C_YDR244W 278 bp YDR243C prp28 1-1767  YDR244W PEX5 1-1839 69-kDa protein containing tetratricopeptide repeat (TPR)
#141	YDR253C_YDR254W 547 bp YDR253C MET32 1-576 zinc finger DNA binding factor, transcriptional regulator of sulfur amino acid metabolism, highly homologous to Met31p YDR254W CHL4 1-1377 
#142	YDR257C 333 bp YDR257C RMS1 1-1485 
#143	YDR259C 500 bp YDR259C YAP6 1-1152 
#144	YDR285W 500 bp YDR285W ZIP1 1-2628 
#145	YDR300C_YDR301W 560 bp YDR300C pro1 1-1287 gamma-glutamyl kinase YDR301W CFT1 1-4074 Component of pre-mRNA cleavage factor II (CFII)\; 150-kDa protein associated with polyadenylation factor 1 (PF I)
#146	YDR308C 500 bp YDR308C SRB7 1-423 RNA polymerase II holoenzyme component
#147	YDR310C_YDR311W 749 bp YDR310C SUM1 1-3189 Suppresor of mar1-1 (sir2) mutation YDR311W TFB1 1-1929 Component of transcription initiation factor IIb, 75 kDa subunit
#148	YDR328C 251 bp YDR328C SKP1 1-585 Skp1p encodes a kinetochore protein subunit of CBF3, a multiprotein complex that binds centromere DNA in vitro
#149	YDR362C_YDR363W 485 bp YDR362C TFC6 1-2019 91 kDa tau91 subunit of transcription factor IIIC (TFIIIC) YDR363W ESC2 1-1371 
#150	YDR364C 286 bp YDR364C cdc40 1-1368 Member of the beta transducin family
#151	YDR369C 201 bp YDR369C xrs2 1-2565 DNA repair protein
#152	YDR381W 500 bp YDR381W YRA1 1-321 Nuclear RNA-binding RNA annealing protein
#153	YDR390C 160 bp YDR390C UBA2 1-1911 
#154	YDR391C_YDR392W 639 bp YDR391C  1-699  YDR392W spt3 1-1014 transcriptional activator
#155	YDR395W 356 bp YDR395W SXM1 1-2835 Sxm1p
#156	YDR397C_YDR398W 572 bp YDR397C NCB2 1-37, 130-533  YDR398W  1-1932 
#157	YDR404C_YDR405W 476 bp YDR404C rpb7 1-516 dissociable subunit of RNA polymerase II YDR405W MRP20 1-792 263-amino acid mitochondrial ribosomal large subunit protein\; similar to L23 family of ribosomal proteins
#158	YDR423C 111 bp YDR423C cad1 1-1230 
#159	YDR427W 198 bp YDR427W RPN9 1-1182 Subunit of the regulatory particle of the proteasome
#160	YDR443C_YDR444W 351 bp YDR443C ssn2 1-4263 RNA polymerase II holoenzyme component YDR444W  1-2064 
#161	YDR447C_YDR448W 511 bp YDR447C RPS17B 1-3, 318-725 Ribosomal protein S17B (rp51B) YDR448W ADA2 1-1305 
#162	YDR463W 125 bp YDR463W STP1 1-1734 Nuclear-localized protein containing zinc finger motifs
#163	YDR473C 500 bp YDR473C  1-1410 
#164	YDR479C_YDR480W 524 bp YDR479C  1-1665  YDR480W DIG2 1-972 MAP kinase-associated protein
#165	YEL009C_YEL008W 748 bp YEL009C GCN4 1-846 transcriptional activator of amino acid biosynthetic genes YEL008W  1-381 
#166	YEL032W 251 bp YEL032W mcm3 1-2916 
#167	YEL037C 446 bp YEL037C rad23 1-1197 ubiquitin-like protein
#168	YEL061C 394 bp YEL061C CIN8 1-3117 
#169	YER008C_YER009W 296 bp YER008C sec3 1-4011 SEC3 encodes the 144 kD and 91 kD components of the Exocyst complex\; the 91 kD component is a C-terminal proteolytic breakdown product of full length Sec3p YER009W NTF2 1-378 
#170	YER013W 409 bp YER013W prp22 1-3438 helicase-like protein
#171	YER022W 292 bp YER022W SRB4 1-2064 subunit of RNA polymerase II holoenzyme\/mediator complex
#172	YER029C_YER030W 238 bp YER029C SMB1 1-591 Associated with U1 snRNP as part of the Sm-core that is common to all spliceosomal snRNPs YER030W  1-483 
#173	YER039C_YER040W 589 bp YER039C HVG1 1-750 Homologous to VRG4 YER040W gln3 1-2193 positive nitrogen regulatory protein
#174	YER045C 500 bp YER045C  1-1470 
#175	YER047C 478 bp YER047C SAP1 1-2694 member of the AAA ATPase family of proteins
#176	YER088C 500 bp YER088C DOT6 1-2013 Derepression Of Telomeric silencing
#177	YER094C_YER095W 633 bp YER094C PUP3 1-618  YER095W rad51 1-1203 RecA homolog\; Rad51p colocalizes to ~65 spots with Dmc1p prior to synapsis (independently of ZIP1 and DMC1), and interacts with Rad52p and Rad55p by two-hybrid analysis\; human Rad51p homolog interacts with Brca2 protein which has been implicated in causing breast cancer
#178	YER099C_YER100W 500 bp YER099C PRS2 1-957 ribose-phosphate pyrophosphokinase 2 YER100W ubc6 1-753 ubiquitin-conjugating enzyme
#179	YER105C_YER106W 312 bp YER105C NUP157 1-4176 Nucleoporin similar to Nup157p and to mammalian Nup155p YER106W  1-909 
#180	YER107C 500 bp YER107C GLE2 1-1098 homologous to S. pombe RAE1 gene\; 2-hybrid analysis demonstrates an interaction with Srp1p and Rip1p\; copurifies with Nup116p
#181	YER108C 189 bp YER108C FLO8 1-1785 putative transcriptional activator of FLO1
#182	YER110C 491 bp YER110C KAP123 1-3342 Karyopherin beta 4
#183	YER111C 500 bp YER111C SWI4 1-3282 transcription factor
#184	YER112W 500 bp YER112W USS1 1-564 U6 snRNA associated protein
#185	YER122C_YER123W 460 bp YER122C GLO3 1-1482 Zinc-finger-containing protein with similarity to Gcs1p and Sps18p YER123W YCK3 1-1620 plasma membrane-bound casein kinase I homolog
#186	YER142C_YER143W 282 bp YER142C MAG1 1-891 3-methyladenine DNA glycosylase YER143W DDI1 1-1287 
#187	YER145C_YER146W 844 bp YER145C FTR1 1-1215 Iron permease YER146W  1-282 
#188	YER147C_YER148W 460 bp YER147C  1-1875  YER148W spt15 1-723 TATA-binding protein (tfIId)
#189	YER159C 393 bp YER159C BUR6 1-429 Transcriptional regulator which functions in modulating the activity of the general transcription machinery in vivo
#190	YER161C 281 bp YER161C spt2 1-1002 non-specific DNA binding protein (sin1)
#191	YER162C 189 bp YER162C rad4 1-2265 
#192	YER165W 500 bp YER165W PAB1 1-1734 Poly(A) binding protein, cytoplasmic and nuclear
#193	YER168C_YER169W 699 bp YER168C CCA1 1-1641 tRNA nucleotidyltransferase (tRNA CCA-pyrophosphorylase) YER169W RPH1 1-2391 Repressor of PHR1 transcription\; binds to PHR1 URS
#194	YER171W 430 bp YER171W rad3 1-2337 
#195	YER172C_YER173W 278 bp YER172C BRR2 1-6492 putative ATP-dependent RNA helicase YER173W rad24 1-1980 
#196	YER176W 500 bp YER176W ECM32 1-3366 DNA Helicase I
#197	YER179W 341 bp YER179W dmc1 1-132, 225-1097 meiosis-specific protein related to RecA and Rad51p. Dmc1p colocalizes with Rad51p to discrete subnuclear sites in nuclear spreads during mid prophase, briefly colocalizes with Zip1p, and then disappears by pachytene
#198	YER184C_YER185W 773 bp YER184C  1-2385  YER185W  1-912 
#199	YFL002C_YFL001W 196 bp YFL002C SPB4 1-1821 ATP-dependent RNA helicase YFL001W deg1 1-1329 Similar to rRNA methyltransferase (Caenorhabditis elegans) and hypothetical 28K protein (alkaline endoglucanase gene 5' region) from Bacillus sp.
#200	YFL003C 328 bp YFL003C MSH4 1-2637 meiosis specific protein, E.coli MutS protein, localizes to discrete sites on meiotic chromosomes
#201	YFL008W 500 bp YFL008W smc1 1-3678 Coiled-coil protein involved in chromosome structure or segregation
#202	YFL022C_YFL021W 955 bp YFL022C FRS2 1-1512 Phenylalanyl-tRNA synthetase, beta subunit, cytoplasmic YFL021W GAT1 1-1533 transcriptional activator with GATA-1-type Zn finger DNA-binding motif
#203	YFL033C_YFL031W 751 bp YFL033C RIM15 1-5313 Protein kinase related to S. pombe cek1+ YFL031W HAC1 1-603 bZIP (basic-leucine zipper) protein
#204	YFR002W 291 bp YFR002W NIC96 1-2520 96 kDa nucleoporin-interacting component
#205	YFR023W 500 bp YFR023W PES4 1-1836 poly(A) binding protein\; related to PES4 protein homolog YHR015w
#206	YFR031C 400 bp YFR031C SMC2 1-3513 nuclear protein related to ScII (chicken), XCAPE (xenopus), and cut14 (S. pombe)\; involved in chromosome segregation and condensation, interacts with Smc1p and Trf4p
#207	YFR034C 162 bp YFR034C pho4 1-939 myc-type helix-loop-helix transcription factor
#208	YFR036W 202 bp YFR036W cdc26 1-375 Protein required only at high temperature
#209	YFR037C_YFR038W 193 bp YFR037C RSC8 1-1674  YFR038W  1-2337 
#210	YFR050C 297 bp YFR050C PRE4 1-801 proteasome subunit necessary for peptidyl glutamyl peptide hydrolyzing activity
#211	YGL011C_YGL010W 297 bp YGL011C SCL1 1-759 Proteasome subunit YC7alpha\/Y8 (protease yscE subunit 7) YGL010W  1-525 
#212	YGL013C_YGL012W 556 bp YGL013C PDR1 1-3207 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type YGL012W ERG4 1-1422 Sterol C-24 reductase
#213	YGL020C_YGL019W 285 bp YGL020C  1-708  YGL019W CKB1 1-837 beta (38kDa) subunit of casein kinase II (CKII)
#214	YGL025C 137 bp YGL025C PGD1 1-1296 Probable transcription factor, polyglutamine domain protein
#215	YGL035C 151 bp YGL035C mig1 1-1515 Zinc-finger protein
#216	YGL044C_YGL043W 446 bp YGL044C RNA15 1-891  YGL043W dst1 1-930 RNA polymerase II elongation factor
#217	YGL058W 425 bp YGL058W rad6 1-519 ubiquitin conjugating (E2) enzyme, separate domains of Rad6p interact with Ubr1 (an E3 ubiquitin ligase needed for multiubiquitination), and Rad18p (a single-stranded DNA-binding protein). The C-terminal 23 residues are critical for sporulation and histone polyubiquitinating activity, but not UV repair or induced mutagenesis.
#218	YGL070C_YGL068W 259 bp YGL070C rpb9 1-369 RNA polymerase II subunit YGL068W  1-585 
#219	YGL071W 500 bp YGL071W RCS1 1-2073 Putative transcription factor that binds the consensus site PyPuCACCCPu
#220	YGL075C_YGL073W 664 bp YGL075C  1-1164  YGL073W HSF1 1-2502 heat shock transcription factor
#221	YGL078C 365 bp YGL078C DBP3 1-1572 ATP-dependent RNA helicase CA3 of the DEAD\/DEAH box family
#222	YGL087C_YGL086W 214 bp YGL087C MMS2 1-11, 97-499 homolog of human CROC-1 gene, protects yeast cells from DNA damage YGL086W MAD1 1-2250 Coiled-coil protein involved in spindle-assembly checkpoint
#223	YGL091C_YGL090W 276 bp YGL091C NBP35 1-987 35 kDa nucleotide binding protein YGL090W  1-1266 
#224	YGL092W 266 bp YGL092W NUP145 1-3954 
#225	YGL097W 500 bp YGL097W SRM1 1-1449 pheromone response pathway suppressor
#226	YGL100W 393 bp YGL100W SEH1 1-1050 nuclear pore protein, homologous to sec13
#227	YGL112C_YGL111W 249 bp YGL112C TAF60 1-1551  YGL111W  1-1392 
#228	YGL115W 391 bp YGL115W SNF4 1-969 associates with Snf1p
#229	YGL116W 496 bp YGL116W cdc20 1-1833 beta-transducin homolog
#230	YGL120C_YGL119W 504 bp YGL120C PRP43 1-2304  YGL119W ABC1 1-1506 multicopy suppressor of a cytochrome b mRNA translation defect, essential for the electron transfer in the bc1 complex
#231	YGL122C 253 bp YGL122C NAB2 1-1578 nuclear polyadenylated RNA binding protein
#232	YGL131C_YGL130W 285 bp YGL131C  1-4212  YGL130W CEG1 1-1380 mRNA guanylyltransferase (mRNA capping enzyme), alpha subunit
#233	YGL151W 154 bp YGL151W NUT1 1-3399 Negative regulator of Urs Two of the HO endonuclease promoter
#234	YGL163C 500 bp YGL163C rad54 1-2697 
#235	YGL167C_YGL166W 660 bp YGL167C pmr1 1-2853 Ca++-Pump, ATPase YGL166W cup2 1-678 regulator of metallothionein (CUP1) expression
#236	YGL173C_YGL172W 586 bp YGL173C KEM1 1-4587 DNA strand-transfer protein exoribonuclease I\; catalyzes the formation of hybrid DNA in vitro\; has 5'-to-3' exonuclease activity on DNA and RNA\; binds to G4 tetraplex DNA and cuts in a single-stranded region 5' to the G4 structure\; protein increases several-fold in meiotic cells YGL172W NUP49 1-1419 nuclear pore complex protein with GLFG repetitive sequence motif
#237	YGL182C_YGL181W 309 bp YGL182C  1-324  YGL181W GTS1 1-1191 Glycine-threonine-serine repeat protein
#238	YGL201C 500 bp YGL201C MCM6 1-3054 
#239	YGL207W 383 bp YGL207W spt16 1-3108 transcription factor
#240	YGL208W 331 bp YGL208W SIP2 1-1248 
#241	YGL216W 500 bp YGL216W KIP3 1-2418 
#242	YGL237C 227 bp YGL237C hap2 1-798 transcriptional activator protein of CYC1
#243	YGL238W 186 bp YGL238W CSE1 1-2883 
#244	YGL244W 348 bp YGL244W RTF1 1-1677 Nuclear protein
#245	YGL251C_YGL250W 836 bp YGL251C HFM1 1-3141 C4 zinc finger DNA-binding protein of low sequence specificity in vitro\; Probable 119 kD DNA\/RNA helicase family member YGL250W  1-738 
#246	YGL253W 500 bp YGL253W hxk2 1-1461 Hexokinase II (PII) (also called Hexokinase B)
#247	YGL254W 195 bp YGL254W FZF1 1-900 putative transcription factor, has five zinc fingers
#248	YGR005C_YGR006W 210 bp YGR005C TFG2 1-1203 transcription initiation factor TFIIF middle subunit YGR006W PRP18 1-660 RNA splicing factor associated with U5 snRNP
#249	YGR013W 213 bp YGR013W SNU71 1-1863 Associated with U1 snRNP (no counterpart in mammalian U1 snRNP. Contains few SR-, RE- and RD-dipeptides.
#250	YGR040W 198 bp YGR040W kss1 1-1107 MAP protein kinase homolog involved in pheromone signal transduction
#251	YGR047C_YGR048W 356 bp YGR047C TFC4 1-3078 transcription factor tau (TFIIIC) subunit 131 YGR048W UFD1 1-1086 
#252	YGR056W 500 bp YGR056W RSC1 1-2787 Member of RSC complex
#253	YGR063C 252 bp YGR063C spt4 1-309 Zn-finger protein, transcriptional regulator
#254	YGR075C 228 bp YGR075C PRP38 1-729 RNA splicing factor
#255	YGR091W 269 bp YGR091W PRP31 1-1485 pre-mRNA splicing protein
#256	YGR098C_YGR099W 440 bp YGR098C esp1 1-4893 vacuolar transporter YGR099W TEL2 1-2067 
#257	YGR104C_YGR105W 230 bp YGR104C SRB5 1-924 subunit of RNA polymerase II holoenzyme\/mediator complex YGR105W VMA21 1-234 
#258	YGR116W 500 bp YGR116W SPT6 1-4356 transcription factor
#259	YGR119C 361 bp YGR119C NUP57 1-1626 Contains GLFG repeats in N-terminal half and heptad repeats in C-terminal half
#260	YGR135W 253 bp YGR135W PRE9 1-777 proteasome component Y13
#261	YGR136W 259 bp YGR136W  1-726 
#262	YGR140W 500 bp YGR140W CBF2 1-2871 110 kDa subunit of the centromere binding factor CBF3
#263	YGR158C 390 bp YGR158C MTR3 1-753 
#264	YGR159C 500 bp YGR159C NSR1 1-1245 nuclear localization sequence binding protein
#265	YGR178C 459 bp YGR178C PBP1 1-2169 
#266	YGR180C 500 bp YGR180C RNR4 1-1038 Ribonucleotide Reductase
#267	YGR185C_YGR186W 253 bp YGR185C TYS1 1-1185 tyrosyl-tRNA synthetase, cytoplasmic YGR186W TFG1 1-2208 Transcription factor TFIIF large subunit
#268	YGR188C 500 bp YGR188C BUB1 1-3066 Serine\/threonine protein kinase required for cell cycle arrest in response to loss of microtubule function
#269	YGR218W 500 bp YGR218W CRM1 1-3255 omosome region maintenance protein
#270	YGR229C_YGR230W 994 bp YGR229C SMI1 1-1518 57 kDa nuclear protein YGR230W  1-414 
#271	YGR246C_YGR247W 693 bp YGR246C BRF1 1-1791 RNA polymerase III transcription factor with homology to TFIIB YGR247W  1-720 
#272	YGR252W 500 bp YGR252W GCN5 1-1320 positive regulator of GCN4 expression and activity of the HAP2--HAP3--HAP4 transcriptional activation complex
#273	YGR253C 500 bp YGR253C PUP2 1-783 Proteasome subunit
#274	YGR258C 500 bp YGR258C rad2 1-3096 homolog of xeroderma pigmentosum group G (XPG) protein, copufurifies with transcription factor, TFIIH, mRNA is cell cycle regulated and induced by DNA damage and by meiosis (different cis-sites utilized in damage and meiotic induction
#275	YGR274C_YGR275W 93 bp YGR274C TAF145 1-3201 Component of the TAFII complex required for activated transcription YGR275W  1-561 
#276	YGR285C 500 bp YGR285C ZUO1 1-1302 Zuotin, putative Z-DNA binding protein
#277	YGR288W 500 bp YGR288W  1-1422 
#278	YHL009C 237 bp YHL009C yap3 1-993 bZIP protein\; transcription factor
#279	YHL020C 274 bp YHL020C OPI1 1-1215 negative regulator of phospholipid biosynthesis
#280	YHL022C 303 bp YHL022C spo11 1-1197 Encodes one of the earliest meiosis-specific recombination functions.
#281	YHL026C_YHL025W 824 bp YHL026C  1-807  YHL025W SNF6 1-999 transcriptional regulator
#282	YHL027W 500 bp YHL027W RIM101 1-1878 Rim101p is similar to the Aspergillus Phenotype-response regulator PacC and the Yarrowia proteinase YlRim1010p\; transcriptional activator required for entry into meiosis
#283	YHL034C 500 bp YHL034C sbp1 1-885 
#284	YHR041C_YHR042W 678 bp YHR041C srb2 1-14, 116-734 RNA polymerase II YHR042W NCP1 1-2076 NADP-cytochrome P450 reductase
#285	YHR058C_YHR059W 223 bp YHR058C MED6 1-888  YHR059W  1-393 
#286	YHR062C 271 bp YHR062C RPP1 1-882 Protein subunit of nuclear ribonuclease P (RNase P)
#287	YHR065C_YHR066W 171 bp YHR065C RRP3 1-1632 RRP3 is a DEAD box gene homologous to eIF-4a which encodes an RNA-dependent ATPase possessing helicase activity which is not specific for RNA YHR066W SSF1 1-1362 homologous to Ssf2p
#288	YHR069C_YHR070W 222 bp YHR069C RRP4 1-1080 3->5 exoribonuclease\; Component of the exosome 3->5 exonuclease complex with Rrp41p, Rrp42p, Rrp43p and Dis3p (Rrp44p). YHR070W  1-1500 
#289	YHR082C 500 bp YHR082C KSP1 1-3090 Serine\/threonine kinase similar to casein kinase II and other serine\/threonine protein kinases
#290	YHR084W 500 bp YHR084W ste12 1-2067 DNA binding protein
#291	YHR089C 478 bp YHR089C GAR1 1-618 small nucleolar RNP proteins
#292	YHR118C_YHR119W 414 bp YHR118C ORC6 1-1308 50-kDa subunit of ORC YHR119W SET1 1-3243 
#293	YHR143W-A 500 bp YHR143W-A RPB12 1-213 subunit of RNA polymerase II
#294	YHR156C_YHR157W 500 bp YHR156C  1-1023  YHR157W rec104 1-549 mRNA is induced early in meiosis
#295	YHR164C 500 bp YHR164C DNA2 1-4569 DNA replication helicase
#296	YHR165C 221 bp YHR165C PRP8 1-7242 RNA splicing factor
#297	YHR166C_YHR167W 291 bp YHR166C CDC23 1-1881  YHR167W  1-786 
#298	YHR184W 314 bp YHR184W SSP1 1-1716 
#299	YHR206W 500 bp YHR206W SKN7 1-1869 
#300	YIL021W 444 bp YIL021W RPB3 1-957 45 kDa subunit of RNA polymerase II
#301	YIL035C 317 bp YIL035C cka1 1-1119 alpha subunit of casein kinase II
#302	YIL038C 376 bp YIL038C NOT3 1-2511 General negative regulator of transcription\; may inhibit RNA polymerase II transcription machinery
#303	YIL047C_YIL046W 827 bp YIL047C SYG1 1-2709 plasma membrane protein YIL046W MET30 1-1923 Met30p contains five copies of WD40 motif and interacts with and regulates Met4p
#304	YIL061C_YIL060W 832 bp YIL061C SNP1 1-903 U1snRNP 70K protein homolog YIL060W  1-435 
#305	YIL063C 253 bp YIL063C YRB2 1-984 nuclear protein, interacts with Gsp1p
#306	YIL072W 500 bp YIL072W hop1 1-1818 Meiosis-specific protein involved in homologous chromosome synapsis and chiasmata formation
#307	YIL084C 296 bp YIL084C SDS3 1-984 Functions are similar to those of SIN3 and RPD3
#308	YIL115C 433 bp YIL115C NUP159 1-4383 159-kDa nucleoporin with coiled-coil domain and repeated motifs typical of nucleoporins
#309	YIL127C_YIL126W 347 bp YIL127C  1-621  YIL126W STH1 1-4080 helicase related protein, snf2 homolog
#310	YIL129C_YIL128W 568 bp YIL129C  1-7131  YIL128W MET18 1-3099 Involved in nucleotide excision repair and regulation of TFIIH
#311	YIL131C_YIL130W 546 bp YIL131C FKH1 1-1455  YIL130W  1-2895 
#312	YIL143C_YIL142W 260 bp YIL143C SSL2 1-2532 DNA helicase homolog\; homolog of human XPBC YIL142W CCT2 1-1584 Cytoplasmic chaperonin of the Cct ring complex related to Tcp1p\; subunit beta
#313	YIL150C 299 bp YIL150C DNA43 1-1716 Protein required for S-phase (DNA synthesis) initiation or completion
#314	YIR008C_YIR009W 218 bp YIR008C PRI1 1-1230 p48 polypeptide of DNA primase YIR009W MSL1 1-336 encodes YU2B, a component of yeast U2 snRNP
#315	YIR017C_YIR018W 489 bp YIR017C MET28 1-564 Transcriptional activator of sulfur amino acid metabolism YIR018W YAP5 1-738 
#316	YIR023W 500 bp YIR023W dal81 1-2913 Transcriptional activator for allantoin and GABA catabolic genes, contains a Zn[2]-Cys[6] fungal-type binuclear cluster domain in the N-terminal region
#317	YIR032C_YIR033W 506 bp YIR032C dal3 1-588 ureidoglycolate hydrolase YIR033W MGA2 1-3342 
#318	YJL006C 322 bp YJL006C CTK2 1-972 
#319	YJL013C 411 bp YJL013C MAD3 1-1548 Checkpoint protein required for cell cycle arrest in response to loss of microtubule function
#320	YJL025W 363 bp YJL025W RRN7 1-1545 member of yeast Pol I core factor (CF) also composed of Rrn11p, Rrn6p and TATA-binding protein
#321	YJL041W 338 bp YJL041W NSP1 1-1, 120-2590 
#322	YJL050W 266 bp YJL050W MTR4 1-3222 DEAD-box family helicase required for mRNA export from nucleus
#323	YJL056C_YJL055W 283 bp YJL056C ZAP1 1-2643 Metalloregulatory protein involved in zinc-responsive transcriptional regulation YJL055W  1-738 
#324	YJL061W 239 bp YJL061W NUP82 1-2142 82-kDa protein, with putative coiled-coil domain, has carboxy-terminal domain, containing heptad repeats, that binds Nsp1p\; nucleoporin
#325	YJL080C 500 bp YJL080C SCP160 1-3669 
#326	YJL081C 286 bp YJL081C ARP4 1-1470 54.8 kDa actin-related protein
#327	YJL087C_YJL085W 341 bp YJL087C TRL1 1-2484 tRNA ligase YJL085W EXO70 1-1872 70 kD component of the Exocyst complex\; required for exocytosis
#328	YJL090C_YJL089W 874 bp YJL090C DPB11 1-2295  YJL089W SIP4 1-2490 shows homology to DNA binding domain of Gal4p, has a leucine zipper motif and acidic region\; lexA-Sip4p activates transcription
#329	YJL093C_YJL092W 610 bp YJL093C TOK1 1-2076 outward-rectifier potassium channel YJL092W hpr5 1-3525 DNA helicase
#330	YJL103C_YJL102W 419 bp YJL103C  1-1857  YJL102W MEF2 1-2460 mitochondrial elongation factor G-like protein
#331	YJL110C 422 bp YJL110C GZF3 1-1656 GATA zinc finger protein 3 homologous to Dal80 in structure and function
#332	YJL127C_YJL126W 280 bp YJL127C spt10 1-1923 negative transcriptional regulator YJL126W NIT2 1-924 Nit2 nitrilase
#333	YJL130C 500 bp YJL130C ura2 1-6645 carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase
#334	YJL141C_YJL140W 570 bp YJL141C YAK1 1-2424 protein kinase YJL140W RPB4 1-666 fourth-largest subunit of RNA polymerase II
#335	YJL148W 486 bp YJL148W RPA34 1-702 RNA polymerase I subunit, not shared (A34.5)
#336	YJL173C 500 bp YJL173C RFA3 1-369 subunit 3 of replication factor-A
#337	YJL196C_YJL194W 555 bp YJL196C ELO1 1-933 Elongation enzyme 1, required for the elongation of the saturated fatty acid tetradecanoic acid (14:0) to that of hexadecanoic acid (16:0) YJL194W cdc6 1-1542 Protein involved in initiation of DNA replication
#338	YJL204C_YJL203W 189 bp YJL204C  1-2523  YJL203W PRP21 1-843 RNA splicing factor
#339	YJR002W 253 bp YJR002W MPP10 1-1782 Protein component of the U3 small nucleolar ribonucleoprotein (snoRNP)
#340	YJR021C 147 bp YJR021C rec107 1-316, 397-1025 
#341	YJR035W 345 bp YJR035W RAD26 1-3258 DNA-dependent ATPase, homologous to human Cockayne syndrome B gene ERCC6, that is a putative helicase
#342	YJR041C_YJR042W 291 bp YJR041C  1-3525  YJR042W NUP85 1-2235 Protein in nuclear pore complex\; may function in nuclear envelope integrity\; may also be involved in tRNA biogenesis
#343	YJR043C 299 bp YJR043C POL32 1-1053 third (55 kDa) subunit of DNA polymerase delta
#344	YJR052W 163 bp YJR052W rad7 1-1698 
#345	YJR060W 500 bp YJR060W cbf1 1-1056 basic helix-loop-helix protein
#346	YJR062C_YJR063W 345 bp YJR062C NTA1 1-1374 52-kDa amidase specific for N-terminal asparagine and glutamine YJR063W RPA12 1-378 A12.2 subunit of RNA polymerase I
#347	YJR067C_YJR068W 198 bp YJR067C YAE1 1-426  YJR068W RFC2 1-1062 Subunit 2 of Replication Factor C\; homologous to human RFC 37 kDa subunit
#348	YJR093C 365 bp YJR093C FIP1 1-984 
#349	YJR094C 500 bp YJR094C IME1 1-1083 meiotic gene expression\; meiosis inducing protein
#350	YJR111C_YJR112W 323 bp YJR111C  1-852  YJR112W NNF1 1-606 involved in nuclear function
#351	YJR122W 500 bp YJR122W CAF17 1-1494 
#352	YKL005C_YKL004W 702 bp YKL005C  1-1785  YKL004W AUR1 1-1206 
#353	YKL013C_YKL012W 286 bp YKL013C ARC19 1-516 Arp Complex Subunit YKL012W PRP40 1-1752 
#354	YKL016C_YKL015W 554 bp YKL016C ATP7 1-525 ATP synthase d subunit YKL015W put3 1-2940 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type
#355	YKL020C_YKL019W 487 bp YKL020C SPT23 1-3249  YKL019W RAM2 1-951 CAAX farnesyltransferase alpha subunit
#356	YKL022C 95 bp YKL022C cdc16 1-2523 putative metal-binding nucleic acid-binding protein, interacts with Cdc23p and Cdc27p to catalyze the conjugation of ubiquitin to cyclin B
#357	YKL024C_YKL023W 580 bp YKL024C URA6 1-615 uridine-monophosphate kinase (uridylate kinase) YKL023W  1-834 
#358	YKL028W 500 bp YKL028W TFA1 1-1449 Large subunit of transcription factor tfIIE
#359	YKL029C 500 bp YKL029C  1-2010 
#360	YKL032C_YKL031W 213 bp YKL032C IXR1 1-1794 intrastrand crosslink recognition protein YKL031W  1-414 
#361	YKL038W 500 bp YKL038W RGT1 1-3513 transcriptional repressor and activator
#362	YKL043W 105 bp YKL043W PHD1 1-1101 putative transcription factor
#363	YKL046C_YKL045W 868 bp YKL046C  1-1350  YKL045W PRI2 1-1587 p58 polypeptide of DNA primase
#364	YKL049C 500 bp YKL049C CSE4 1-414 high similarity to histone H3 and to human centromere protein CENP-A
#365	YKL057C 442 bp YKL057C NUP120 1-3114 100-kDa protein (predicted molecular weight is 120 kDa) with two leucine zipper motifs, coiled-coil region, and some homology to Nup133p
#366	YKL059C_YKL058W 722 bp YKL059C  1-1326  YKL058W TOA2 1-369 Transcription factor IIA, small chain
#367	YKL062W 500 bp YKL062W MSN4 1-1893 zinc finger protein
#368	YKL068W 500 bp YKL068W NUP100 1-2880 Nuclear pore complex protein homologous to Nup116p
#369	YKL074C_YKL073W 236 bp YKL074C MUD2 1-1584  YKL073W LHS1 1-2646 novel member of the Hsp70 family of molecular chaperones that localizes to the lumen of the endoplasmic reticulum:
#370	YKL089W 184 bp YKL089W mif2 1-1650 Centromere protein required for normal chromosome segregation and spindle integrity
#371	YKL095W 425 bp YKL095W YJU2 1-837 
#372	YKL102C_YKL101W 552 bp YKL102C  1-306  YKL101W HSL1 1-4557 Putative protein kinase homologous to S. pombe cdr1\/nim1
#373	YKL109W 500 bp YKL109W HAP4 1-1665 transcriptional activator protein of CYC1 (component of HAP2\/HAP3 heteromer)
#374	YKL113C_YKL112W 694 bp YKL113C RAD27 1-1149 42 kDa 5' to 3' exonuclease required for Okazaki fragment processing YKL112W ABF1 1-2196 transcriptional activator and ARS1 binding protein
#375	YKL114C 271 bp YKL114C APN1 1-1104 major apurinic\/apyrimidinic endonuclease\/3'-repair diesterase
#376	YKL125W 497 bp YKL125W RRN3 1-1884 DNA-independent RNA Polymerase I transcription factor
#377	YKL139W 500 bp YKL139W CTK1 1-1587 
#378	YKL144C_YKL143W 299 bp YKL144C RPC25 1-639 Subunit of RNA polymerase III YKL143W LTV1 1-1392 
#379	YKL149C 377 bp YKL149C DBR1 1-1218 debranching enzyme
#380	YKL185W 500 bp YKL185W ASH1 1-1767 
#381	YKL186C 500 bp YKL186C MTR2 1-555 mRNA transport regulator
#382	YKL193C 277 bp YKL193C SDS22 1-1017 Interacts with and may be a positive regulator of GLC7 which encodes type1 protein phosphatase
#383	YKL206C_YKL205W 241 bp YKL206C  1-804  YKL205W LOS1 1-3303 Nuclear pore protein involved in pre-tRNA splicing
#384	YKL210W 500 bp YKL210W UBA1 1-3075 ubiquitin activating enzyme, similar to Uba2p
#385	YKL222C_YKL221W 486 bp YKL222C  1-2118  YKL221W  1-1422 
#386	YKR001C_YKR002W 509 bp YKR001C VPS1 1-2115 putative GTP-binding protein\; similar to mammalian Mx proteins YKR002W PAP1 1-1707 poly(A) polymerase
#387	YKR008W 212 bp YKR008W RSC4 1-1878 Member of RSC complex.
#388	YKR034W 66 bp YKR034W DAL80 1-810 negative regulator of multiple nitrogen catabolic genes
#389	YKR048C 189 bp YKR048C NAP1 1-1254 nucleosome assembly protein I
#390	YKR054C_YKR055W 290 bp YKR054C DYN1 1-12279 heavy chain of cytoplasmic dynein YKR055W RHO4 1-876 ras homolog--GTP binding protein
#391	YKR056W 356 bp YKR056W RNC1 1-1854 
#392	YKR062W 299 bp YKR062W TFA2 1-987 Small subunit of TFIIE transcription factor
#393	YKR063C_YKR064W 249 bp YKR063C LAS1 1-1509  YKR064W  1-2592 
#394	YKR072C 63 bp YKR072C sis2 1-1689 sit4 suppressor
#395	YKR081C_YKR082W 284 bp YKR081C  1-1035  YKR082W NUP133 1-3474 Nuclear pore complex protein involved in poly(A)+ RNA transport, nuclear pore distribution, and possibly in the biogenesis of functional tRNA
#396	YKR085C_YKR086W 175 bp YKR085C MRPL20 1-588 22.3 kDa mitochondrial ribosomal large subunit protein YmL20\; homologous to L17 of E. coli YKR086W PRP16 1-3216 putative ATP-binding protein
#397	YKR092C 500 bp YKR092C SRP40 1-1221 nucleolar protein that is immunologically and structurally related to rat Nopp140, a nonribosomal protein of the nucleolus and coiled bodies.
#398	YKR095W 500 bp YKR095W mlp1 1-5628 myosin-like protein
#399	YKR098C_YKR099W 671 bp YKR098C UBP11 1-2154 Ubiquitin-specific protease YKR099W bas1 1-2436 
#400	YKR100C_YKR101W 499 bp YKR100C  1-726  YKR101W sir1 1-2037 repressor of silent mating loci
#401	YLL005C_YLL004W 526 bp YLL005C  1-2607  YLL004W ORC3 1-1851 Third subunit of the origin recognition complex
#402	YLL009C_YLL008W 314 bp YLL009C COX17 1-210 cysteine-rich cytoplasmic protein YLL008W DRS1 1-2259 putative ATP dependent RNA helicase
#403	YLL011W 267 bp YLL011W SOF1 1-1470 56 kDa nucleolar snRNP protein that shows homology to beta subunits of G-proteins and the splicing factor Prp4
#404	YLL036C_YLL035W 323 bp YLL036C PRP19 1-1512 RNA splicing factor YLL035W  1-1899 
#405	YLL039C 500 bp YLL039C UBI4 1-1146 ubiquitin
#406	YLR014C_YLR015W 244 bp YLR014C ppr1 1-2715 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type YLR015W  1-1518 
#407	YLR025W 500 bp YLR025W snf7 1-723 involved in derepression of SUC2 in response to glucose limitation
#408	YLR032W 205 bp YLR032W RAD5 1-3510 putative ATPase\/DNA helicase
#409	YLR055C_YLR056W 780 bp YLR055C spt8 1-1809 transcription factor, probable member of histone acetyltransferase SAGA complex YLR056W ERG3 1-1098 C-5 sterol desaturase
#410	YLR071C_YLR072W 235 bp YLR071C rgr1 1-3249 component of RNA polymerase II holoenzyme\/mediator complex, interacts with Sin4p, Gal11p, and a 50 kd polypeptide YLR072W  1-2082 
#411	YLR098C 270 bp YLR098C CHA4 1-1947 DNA-binding transcriptional activator or CHA1
#412	YLR103C_YLR104W 643 bp YLR103C CDC45 1-1953 omosomal DNA replication initiation protein YLR104W  1-396 
#413	YLR105C 500 bp YLR105C SEN2 1-1134 tRNA splicing endonuclease subunit
#414	YLR114C_YLR115W 746 bp YLR114C  1-2295  YLR115W CFT2 1-2580 Component of cleavage factor II (CF II)\; 105-kDa protein associated with polyadenylation factor 1 (PF I)
#415	YLR116W 257 bp YLR116W MSL5 1-1431 
#416	YLR131C 460 bp YLR131C ACE2 1-2313 zinc finger transcription factor
#417	YLR139C_YLR141W 209 bp YLR139C SLS1 1-1932 73 kDa mitochondrial integral membrane protein YLR141W RRN5 1-1092 transcription factor, member of UAF (upstream activation factor) along with Rrn9p and Rrn10p
#418	YLR147C_YLR148W 177 bp YLR147C SMD3 1-306 encodes a core snRNP protein YLR148W pep3 1-2757 vacuolar membrane protein
#419	YLR175W 304 bp YLR175W CBF5 1-1452 major low affinity 55 kDa Centromere\/microtubule binding protein
#420	YLR176C_YLR177W 821 bp YLR176C RFX1 1-2436  YLR177W  1-1887 
#421	YLR181C_YLR182W 269 bp YLR181C  1-993  YLR182W SWI6 1-2412 regulatory protein
#422	YLR197W 398 bp YLR197W SIK1 1-1515 homology to microtubule binding proteins and to X90565_5.cds
#423	YLR223C_YLR224W 973 bp YLR223C IFH1 1-3258 has a weak RNA-dependent ATPase activity which is not specific for rRNA YLR224W  1-1110 
#424	YLR233C_YLR234W 258 bp YLR233C EST1 1-2100 Telomere elongation protein (ever shorter telomeres) YLR234W top3 1-1971 DNA Topoisomerase III
#425	YLR255C_YLR256W 461 bp YLR255C  1-354  YLR256W HAP1 1-4509 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type
#426	YLR263W 500 bp YLR263W RED1 1-2484 Meiosis-specific protein involved in homologous chromosome synapsis and chiasmata formation\; localizes to chromosome cores independently of Mei4p and Spo11p\; mRNA is induced in meiosis
#427	YLR266C_YLR267W 487 bp YLR266C  1-2106  YLR267W  1-1713 
#428	YLR273C_YLR274W 525 bp YLR273C PIG1 1-1947 Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit YLR274W CDC46 1-2328 
#429	YLR275W 495 bp YLR275W SMD2 1-5, 96-423 
#430	YLR277C 500 bp YLR277C YSH1 1-2340 subunit of Polyadenylation factor I (PF I)
#431	YLR293C 270 bp YLR293C GSP1 1-660 GTP-binding protein
#432	YLR298C_YLR299W 652 bp YLR298C YHC1 1-696 U1 snRNP protein required for pre-mRNA splicing YLR299W ECM38 1-1983 gamma-glutamyltransferase homolog
#433	YLR321C 308 bp YLR321C SFH1 1-1281 homolog of Snf5p, member of the chromatin remodeling complex, RSC
#434	YLR329W 500 bp YLR329W rec102 1-603 23 kDa protein containing a putative leucine zipper\; meiosis specific recombination protein\; mRNA is induced early in sporulation
#435	YLR335W 180 bp YLR335W NUP2 1-2163 nuclear pore complex protein with central repetitive domain similar to that of NSP1 and NUP1
#436	YLR398C 500 bp YLR398C SKI2 1-3864 antiviral protein, putative helicase
#437	YLR399C_YLR400W 466 bp YLR399C BDF1 1-2061 Bdf1p contains two bromodomains, localizes to the nucleus and to chomosomes in spread meiotic nuclei but is excluded from the nucleolus YLR400W  1-474 
#438	YLR403W 487 bp YLR403W SFP1 1-2052 split zinc finger protein
#439	YLR418C_YLR419W 332 bp YLR418C CDC73 1-1182  YLR419W  1-4308 
#440	YLR430W 500 bp YLR430W sen1 1-6696 component of a nuclear-localized tRNA splicing complex
#441	YLR438C-A_YLR439W 312 bp YLR438C-A SMX4 1-270 Putative snRNP protein containing Sm-like domain\; coprecipitates with U4, U5 and U6 snRNAs YLR439W MRPL4 1-960 Mitochondrial 60S ribosomal protein L4
#442	YLR442C_YLR443W 373 bp YLR442C SIR3 1-2937 regulator of silent mating loci YLR443W ECM7 1-1347 
#443	YLR451W 328 bp YLR451W leu3 1-2661 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type
#444	YLR453C 500 bp YLR453C RIF2 1-1188 Nuclear protein
#445	YML008C_YML007W 857 bp YML008C erg6 1-1152 S-adenoslymethionine: delta 24-methyltransferase YML007W YAP1 1-1953 jun-like transcription factor
#446	YML011C_YML010W 248 bp YML011C  1-534  YML010W spt5 1-3192 transcription factor
#447	YML021C_YML020W 335 bp YML021C ung1 1-1080 uracil DNA glycosylase YML020W  1-1995 
#448	YML027W 500 bp YML027W YOX1 1-1158 Homeobox-domain containing protein
#449	YML031W 159 bp YML031W ndc1 1-1968 Nuclear envelope protein with multiple putative transmembrane domains
#450	YML043C 500 bp YML043C RRN11 1-1524 
#451	YML047C_YML046W 398 bp YML047C  1-1059  YML046W PRP39 1-1890 RNA splicing factor associated with U1 snRNP
#452	YML051W 283 bp YML051W gal80 1-1308 regulatory protein
#453	YML061C_YML060W 338 bp YML061C pif1 1-2580 5' to 3' DNA helicase YML060W OGG1 1-1131 43-kDa 8-oxo-guanine DNA glycosylase
#454	YML066C_YML065W 676 bp YML066C  1-1110  YML065W ORC1 1-2745 120-kDa (largest) subunit of origin recognition complex (ORC)\; shows homology to Cdc6p, Cdc18p, and Sir3p and to proteins from K. lactis, S. pombe, and humans
#455	YML069W 270 bp YML069W POB3 1-1659 Binds to catalytic subunit of DNA polymerase alpha (Pol1p)
#456	YML074C 500 bp YML074C NPI46 1-1236 Prolyl cis-trans isomerase, also called proline rotamase or peptidylprolyl cis-trans isomerase (PPIase)
#457	YML076C 386 bp YML076C  1-2835 
#458	YML092C 383 bp YML092C PRE8 1-753 proteasome component Y7
#459	YML099C_YML098W 226 bp YML099C arg81 1-2643 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type YML098W TAF19 1-504 TFIID subunit
#460	YML103C_YML102W 744 bp YML103C NUP188 1-4968 Nucleoporin YML102W CAC2 1-1407 p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)
#461	YML112W 271 bp YML112W CTK3 1-891 CTD kinase-I gamma subunit
#462	YML114C_YML113W 469 bp YML114C  1-1533  YML113W DAT1 1-747 datin, an oligo(dA).oligo(dT)-binding protein
#463	YMR001C 500 bp YMR001C cdc5 1-2118 protein kinase which functions at the G(sub)2\/M boundary
#464	YMR016C 500 bp YMR016C SOK2 1-2358 displays homologies to several transcription factors
#465	YMR019W 403 bp YMR019W STB4 1-2850 Binds Sin3p in two-hybrid assay
#466	YMR021C_YMR022W 261 bp YMR021C MAC1 1-1254 metal-binding transcriptional activator YMR022W QRI8 1-498 ubiquitin conjugating enzyme
#467	YMR037C 500 bp YMR037C MSN2 1-2115 zinc finger protein
#468	YMR039C_YMR040W 858 bp YMR039C SUB1 1-879 suppressor of TFIIB mutations YMR040W  1-483 
#469	YMR042W 232 bp YMR042W arg80 1-534 Regulator of arginine-responsive genes with ARG81 and ARG82
#470	YMR043W 500 bp YMR043W mcm1 1-861 putative transcriptional activator of alpha-specific genes
#471	YMR047C_YMR048W 275 bp YMR047C NUP116 1-3342 Nuclear pore complex protein that is member of GLFG repeat-containing family of nucleoporins and is highly homologous to Nup100p YMR048W  1-954 
#472	YMR059W 306 bp YMR059W SEN15 1-447 15kDa subunit of the tetrameric tRNA splicing endonuclease
#473	YMR060C_YMR061W 239 bp YMR060C TOM37 1-984 mitochondrial import receptor, heterodimerizes with Tom70p, preferentially recognizes the mature regions of precursor proteins associated with ATP-dependent cytosolic chaperones YMR061W RNA14 1-2034 
#474	YMR078C_YMR079W 260 bp YMR078C CTF18 1-2226 chromosome transmission YMR079W SEC14 1-9, 166-1071 phosphatidylinositol transfer protein
#475	YMR094W 268 bp YMR094W CTF13 1-1437 58 kd component (Cbf3c) of the multisubunit 'Cbf3' kinetochore protein complex, which binds to the CDE III element of centromeres
#476	YMR106C 430 bp YMR106C HDF2 1-1890 Ku80 homolog, exhibits DNA binding activity on its own, associates with Hdf1p to form major DNA end-binding complex
#477	YMR125W 500 bp YMR125W sto1 1-2577 transcriptional activator of glycolytic genes
#478	YMR127C_YMR128W 350 bp YMR127C SAS2 1-1017 Protein involved in silencing HMR, homologous to acetyltransferases YMR128W ECM16 1-3804 
#479	YMR129W 304 bp YMR129W POM152 1-4014 Nuclear pore membrane glycoprotein
#480	YMR132C_YMR133W 636 bp YMR132C  1-627  YMR133W REC114 1-1308 mRNA is induced early in sporulation
#481	YMR137C_YMR138W 191 bp YMR137C SNM1 1-1986 interstrand crosslink repair protein YMR138W cin4 1-576 GTP-binding protein
#482	YMR139W 394 bp YMR139W RIM11 1-1113 Serine\/threonine protein kinase, phosphorylates the mitotic activator IME1
#483	YMR166C_YMR167W 412 bp YMR166C  1-1107  YMR167W MLH1 1-2310 MutL homolog, forms a complex with Pms1p and Msh2p to repair mismatched DNA
#484	YMR168C 193 bp YMR168C CEP3 1-1827 
#485	YMR179W 500 bp YMR179W spt21 1-2277 non-specific DNA binding protein
#486	YMR182C 500 bp YMR182C RGM1 1-636 Putative transcriptional repressor with proline-rich zinc fingers
#487	YMR201C_YMR202W 492 bp YMR201C RAD14 1-27, 112-1200 human xeroderma pigmentosum group A DNA repair gene homolog YMR202W ERG2 1-669 C-8 sterol isomerase
#488	YMR224C 306 bp YMR224C MRE11 1-2079 localizes to discrete sites in rad50s mutants. Mre11p, Rad50p, Mer2p and Xrs2p function in a complex by immunoprecipitation and two-hybrid analyses\; mutations in these genes have similar phenotypes. mRNA is induced in meiosis
#489	YMR229C 500 bp YMR229C FMI1 1-5190 
#490	YMR235C_YMR236W 235 bp YMR235C rna1 1-1224  YMR236W TAF17 1-474 TFIID subunit
#491	YMR239C 252 bp YMR239C RNT1 1-1416 Ribonuclease III
#492	YMR240C_YMR241W 720 bp YMR240C CUS1 1-1311 U2 snRNP protein YMR241W  1-945 
#493	YMR268C_YMR269W 441 bp YMR268C PRP24 1-1335  YMR269W  1-429 
#494	YMR270C 441 bp YMR270C RRN9 1-1098 Upstream activation factor subunit
#495	YMR275C_YMR276W 245 bp YMR275C BUL1 1-2931  YMR276W DSK2 1-1122 ubiquitin-like protein
#496	YMR277W 307 bp YMR277W FCP1 1-2199 
#497	YMR280C 500 bp YMR280C CAT8 1-4302 Zinc-cluster protein involved in activating gluconeogenic genes\; related to Gal4p
#498	YMR284W 170 bp YMR284W HDF1 1-1809 DNA binding protein
#499	YMR308C 500 bp YMR308C PSE1 1-3270 Karyopherin
#500	YMR313C_YMR314W 401 bp YMR313C  1-1929  YMR314W PRE5 1-705 alpha-type of subunit of 20S proteasome
#501	YNL007C_YNL006W 501 bp YNL007C sis1 1-1059 sit4 suppressor, dnaJ homolog YNL006W LST8 1-912 
#502	YNL012W 500 bp YNL012W spo1 1-1611 encodes a protein with high similarity to phospholipase B
#503	YNL017C_YNL016W 430 bp YNL017C  1-339  YNL016W PUB1 1-1362 poly(A)+ RNA-binding protein
#504	YNL022C_YNL021W 327 bp YNL022C  1-1473  YNL021W HDA1 1-2121 histone deacetylase, shares sequence similarity with Rpd3p, Hos1p, Hos2p, and Hos3p
#505	YNL025C 500 bp YNL025C ssn8 1-972 C-type cyclin associated with the Ssn3p cyclin-dependent kinase
#506	YNL031C_YNL030W 676 bp YNL031C HHT2 1-411 Histone H3 (HHT1 and HHT2 code for identical proteins) YNL030W HHF2 1-312 Histone H4 (HHF1 and HHF2 code for identical proteins)
#507	YNL039W 297 bp YNL039W TFC5 1-1785 90 kd subunit of TFIIIB, also called TFIIIB90 or B'' or B''90 component
#508	YNL059C 500 bp YNL059C ARP5 1-2268 Actin-related protein
#509	YNL062C_YNL061W 327 bp YNL062C GCD10 1-1437 RNA-binding (zeta) subunit of translation initiation factor 3 (eIF-3) YNL061W NOP2 1-1857 90-kDa protein, located in nucleolus, that is homologous to a human proliferation-associated nucleolar protein, p120
#510	YNL068C 500 bp YNL068C FKH2 1-2589 
#511	YNL082W 436 bp YNL082W pms1 1-2715 MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch
#512	YNL088W 500 bp YNL088W top2 1-4287 topoisomerase II, Top2p localizes to axial cores in meiosis
#513	YNL102W 333 bp YNL102W pol1 1-4407 DNA polymerase I alpha subunit, p180
#514	YNL104C_YNL103W 980 bp YNL104C LEU4 1-1860 alpha-isopropylmalate synthase (2-Isopropylmalate Synthase) YNL103W met4 1-2019 member of the leucine zipper family of transcriptional activators
#515	YNL112W 439 bp YNL112W DBP2 1-1273, 2276-2643 ATP-dependent RNA helicase of DEAD box family
#516	YNL115C_YNL113W 717 bp YNL115C  1-1935  YNL113W rpc19 1-429 subunit common to RNA polymerases I (A) and III (C)
#517	YNL126W 378 bp YNL126W SPC98 1-2541 spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP
#518	YNL151C_YNL150W 729 bp YNL151C rpc31 1-756 31-kDa subunit of RNA polymerase III (C)\; HMG1 like protein YNL150W  1-408 
#519	YNL167C 500 bp YNL167C sko1 1-1944 CREB like repressor, bZIP protein that binds to CRE motifs, interacts with Mig1p
#520	YNL173C_YNL172W 578 bp YNL173C MDG1 1-1101  YNL172W APC1 1-5247 Component of the anaphase-promoting complex
#521	YNL189W 500 bp YNL189W srp1 1-1629 karyopherin alpha homolog of 60 kDa
#522	YNL199C 500 bp YNL199C GCR2 1-1605 Activates transcription of glycolytic genes\; homologous to GCR1\; may function in complex with Gcr2p
#523	YNL204C_YNL202W 291 bp YNL204C SPS18 1-903 sporulation-specific protein YNL202W SPS19 1-888 peroxisomal 2,4-dienoyl-CoA reductase
#524	YNL206C 219 bp YNL206C  1-1368 
#525	YNL211C_YNL210W 615 bp YNL211C  1-261  YNL210W mer1 1-813 encodes protein with RNA-binding motifs required for MRE2-dependent mRNA splicing
#526	YNL216W 377 bp YNL216W rap1 1-2484 repressor activator protein
#527	YNL221C_YNL220W 717 bp YNL221C POP1 1-2628 Component of nuclear RNase P and RNase MRP YNL220W ade12 1-1302 adenylosuccinate synthetase
#528	YNL222W 239 bp YNL222W SSU72 1-621 
#529	YNL236W 362 bp YNL236W sin4 1-2925 component of RNA polymerase II holoenzyme\/mediator complex
#530	YNL248C_YNL247W 266 bp YNL248C RPA49 1-1248 49-kDa alpha subunit of RNA polymerase A YNL247W  1-2304 
#531	YNL250W 500 bp YNL250W rad50 1-3939 protein contains a purine-binding domain, two heptad repeats and a hydrophobic tail, Rad50p interacts with Mre11p and Xrs2p in two-hybrid and immunoprecipitation analyses\; it co-localizes to spots with Mre11p and Xrs2p in a rad50s background
#532	YNL251C 500 bp YNL251C NRD1 1-1728 
#533	YNL261W 219 bp YNL261W ORC5 1-1440 Fifth largest subunit of origin recognition complex\; contains possible ATP-binding site
#534	YNL263C_YNL262W 371 bp YNL263C YIF1 1-945  YNL262W pol2 1-6669 DNA polymerase II
#535	YNL267W 492 bp YNL267W PIK1 1-3201 Phosphatidylinositol 4-kinase
#536	YNL283C_YNL282W 991 bp YNL283C WSC2 1-1512 Putative integral membrane protein containing novel cysteine motif. Similarity to SLG1 (WSC1), WSC3 and WSC4 YNL282W POP3 1-588 
#537	YNL291C_YNL290W 402 bp YNL291C MID1 1-1647 N-glycosylated integral plasma membrane protein YNL290W RFC3 1-1023 Subunit 3 of Replication Factor C\; homologous to human RFC 36 kDa subunit
#538	YNL292W 264 bp YNL292W PUS4 1-1212 Pseudouridine synthase
#539	YNL313C_YNL312W 264 bp YNL313C  1-2715  YNL312W RFA2 1-7, 116-930 subunit 2 of replication factor RF-A\; 29\% identical to the human p34 subunit of RF-A
#540	YNL315C_YNL314W 166 bp YNL315C ATP11 1-957  YNL314W DAL82 1-768 positive regulator of allophanate inducible genes
#541	YNL330C 238 bp YNL330C rpd3 1-1302 histone deacetylase
#542	YNR003C_YNR004W 645 bp YNR003C rpc34 1-954 34-kDa subunit of RNA polymerase III (C) YNR004W  1-441 
#543	YNR010W 304 bp YNR010W CSE2 1-450 Protein required for accurate mitotic chromosome segregation
#544	YNR011C_YNR012W 481 bp YNR011C prp2 1-2631 putative RNA-dependent ATPase YNR012W URK1 1-1506 Uridine kinase
#545	YNR022C_YNR023W 224 bp YNR022C  1-420  YNR023W SNF12 1-1701 73 kDa subunit of the SWI\/SNF transcription activation complex, homolog of Rsc6p subunit of the RSC chromatin remodeling complex
#546	YNR052C 472 bp YNR052C POP2 1-1302 Putative transcription factor
#547	YOL002C_YOL001W 854 bp YOL002C  1-984  YOL001W pho80 1-882 negative transcriptional regulator
#548	YOL005C_YOL004W 762 bp YOL005C RPB11 1-363 RNA polymerase II subunit, homologous to S. pombe Rpb11p subunit YOL004W sin3 1-4611 DNA binding protein involved in transcriptional regulation
#549	YOL006C 425 bp YOL006C top1 1-2310 topoisomerase I
#550	YOL012C 500 bp YOL012C HTA3 1-405 An evolutionarily conserved member of the histone H2A F\/Z family of histone variants
#551	YOL021C_YOL020W 745 bp YOL021C DIS3 1-3006  YOL020W TAT2 1-1779 Tryptophan permease, high affinity
#552	YOL028C 500 bp YOL028C YAP7 1-738 bZIP protein
#553	YOL051W 500 bp YOL051W gal11 1-3246 Component of the RNA polymerase II holoenzyme complex, positive and negative transcriptional regulator of genes involved in mating-type specialization
#554	YOL067C 177 bp YOL067C RTG1 1-534 Transcription factor (bHLH) involved in interorganelle communication between mitochondria, peroxisomes, and nucleus
#555	YOL089C 421 bp YOL089C  1-3093 
#556	YOL090W 218 bp YOL090W msh2 1-2895 MutS homolog encoding major mismatch repair activity in mitosis and meiosis, functions with Pms1p and Pms2\/Mlh1p in a complex which interacts with either Pms3\/Msh6p to repair single-base and insertion-deletion mispairs, or Msh3p to repair only insertion-deletion mispairs
#557	YOL094C_YOL093W 259 bp YOL094C RFC4 1-972 Subunit 4 of Replication Factor C\; homologous to human RFC 40 kDa subunit YOL093W  1-882 
#558	YOL108C_YOL107W 215 bp YOL108C INO4 1-456 Transcription factor involved in activation of phospholipid synthetic genes YOL107W  1-1029 
#559	YOL115W 500 bp YOL115W TRF4 1-1755 homologous to Trf5p and Top1p, associates with Smc1p and Smc2p
#560	YOL116W 320 bp YOL116W MSN1 1-1149 43 kDa protein, transcriptional activator
#561	YOL123W 500 bp YOL123W HRP1 1-1605 
#562	YOL135C_YOL133W 280 bp YOL135C MED7 1-669 Stoichiometric member of mediator complex YOL133W HRT1 1-366 High level expression Reduces Ty3 Transposition
#563	YOL148C 358 bp YOL148C SPT20 1-1815 transcription factor, member of the histone acetyltransferase SAGA complex
#564	YOR005C 336 bp YOR005C DNL4 1-2835 ATP dependent DNA ligase
#565	YOR028C_YOR029W 179 bp YOR028C CIN5 1-888 bZIP protein, can activate transcription from a promoter containing a Yap recognition site YOR029W  1-336 
#566	YOR038C_YOR039W 379 bp YOR038C HIR2 1-2628 putative repressor protein\; contains nuclear targeting signal YOR039W CKB2 1-777 Casein kinase II, beta' subunit
#567	YOR048C 500 bp YOR048C rat1 1-3021 RNA trafficking protein\; transcription activator
#568	YOR058C 500 bp YOR058C ASE1 1-2658 encodes component of the spindle midzone
#569	YOR060C_YOR061W 370 bp YOR060C  1-774  YOR061W cka2 1-1020 alpha' subunit of casein kinase II
#570	YOR074C_YOR075W 622 bp YOR074C cdc21 1-100, 236-915 Thymidylate synthase YOR075W UFE1 1-1041 endoplasmic reticulum t-SNARE, coprecipitates with Sec20p, Tip1p. and Sec22p
#571	YOR098C_YOR099W 646 bp YOR098C nup1 1-3231 nuclear pore complex protein YOR099W KTR1 1-1182 type 2 membrane protein\; probable secretory protein
#572	YOR113W 281 bp YOR113W AZF1 1-2745 probable transcription factor, asparagine-rich zinc-finger protein, suppressor of mutation in the nuclear gene for the core subunit of mitochondrial RNA polymerase
#573	YOR116C_YOR117W 883 bp YOR116C RPO31 1-4383 RNA polymerase III large subunit YOR117W RPT5 1-1305 
#574	YOR138C_YOR140W 656 bp YOR138C  1-2016  YOR140W SFL1 1-2301 Transcription factor
#575	YOR151C 500 bp YOR151C RPB2 1-3675 RNA polymerase II subunit
#576	YOR159C_YOR160W 272 bp YOR159C SME1 1-285 homologue of human E core protein YOR160W MTR10 1-2919 
#577	YOR162C_YOR163W 748 bp YOR162C YRR1 1-2433 transcription factor YOR163W  1-567 
#578	YOR185C 500 bp YOR185C gsp2 1-663 GTP binding protein, almost identical to Gsp1p
#579	YOR194C_YOR195W 322 bp YOR194C TOA1 1-861 Transcription factor IIA, large chain YOR195W SLK19 1-2466 possible leucine zipper
#580	YOR204W 302 bp YOR204W DED1 1-1815 ATP-dependent RNA helicase of DEAD box family\; suppressor of a pre-mRNA splicing mutation, prp8-1
#581	YOR207C_YOR208W 467 bp YOR207C ret1 1-3450 second-largest subunit of RNA polymerase III YOR208W PTP2 1-2253 protein tyrosine phosphatase
#582	YOR209C_YOR210W 593 bp YOR209C NPT1 1-1290  YOR210W RPB10 1-213 RNA polymerase II subunit
#583	YOR213C 311 bp YOR213C SAS5 1-747 
#584	YOR216C_YOR217W 321 bp YOR216C RUD3 1-1455 Relieves uso1-1 Transport Defect YOR217W RFC1 1-2586 Subunit 1 of Replication Factor C\; homologous to human RFC 140 kDa subunit
#585	YOR224C 126 bp YOR224C rpb8 1-441 16-kDa RNA polymerase subunit (common to polymerases I, II and III)
#586	YOR228C_YOR229W 631 bp YOR228C  1-909  YOR229W WTM2 1-1404 Transcriptional modulator
#587	YOR230W 500 bp YOR230W WTM1 1-1314 Transcriptional modulator
#588	YOR250C 242 bp YOR250C CLP1 1-1338 
#589	YOR259C_YOR260W 275 bp YOR259C RPT4 1-1314 ATPase\; component of the 26S proteasome cap subunit YOR260W gcd1 1-1737 translation initiation factor eIF2b gamma subunit\; negative regulator in the general control of amino acid biosynthesis
#590	YOR274W 500 bp YOR274W MOD5 1-1287 transfer RNA isopentenyl transferase
#591	YOR290C_YOR291W 916 bp YOR290C snf2 1-5112 transcriptional regulator YOR291W  1-4419 
#592	YOR310C 500 bp YOR310C NOP5 1-1536 nucleolar protein
#593	YOR318C_YOR319W 385 bp YOR318C  1-4, 352-653  YOR319W HSH49 1-642 homolog of mammalian splicing factor\/U2 snRNP protein
#594	YOR337W 473 bp YOR337W TEA1 1-2280 Mutants are defective in Ty1 Enhancer-mediated Activation
#595	YOR340C_YOR341W 804 bp YOR340C RPA43 1-981 DNA-dependent RNA polymerase I subunit A43 YOR341W rpa190 1-4995 RNA polymerase I subunit 190 (alpha)
#596	YOR344C 500 bp YOR344C TYE7 1-876 TYE7, a 33 kDa serine-rich protein, is a potential member of the basic region\/helix-loop-helix\/leucine-zipper protein family
#597	YOR351C_YOR352W 701 bp YOR351C mek1 1-1494 mRNA is induced in meiosis, encodes a meiosis-specific serine\/threonine protein kinase which interacts with and is believed to phosphorylate Hop1p YOR352W  1-1032 
#598	YOR357C_YOR358W 448 bp YOR357C GRD19 1-489 Grd19p that is epitope tagged with the HA epitope at the C-terminus is functional, migrates at 28 kDa, fractionates predominantly in the cytosolic fraction (however a minor amount associates with membranes), and shows diffuse cytosolic labeling when immunolocalized in wild-type yeast\; however, in vps27 mutant cells (a class E vps mutant, which accumulates a prevaculoar compartment), Grd19p-HA co-localizes with the vacuolar H+-ATPase in the prevaculoar compartment\; Grd19p contains PX domain, which is found in proteins such as human SNX1 (Sorting Nexin-1) (Ponting, C.P. 1996. Protein Science 5:2353-2357) YOR358W HAP5 1-729 Component, along with Hap2p and Hap3p, of CCAAT-binding transcription factor
#599	YOR363C 158 bp YOR363C pip2 1-2991 
#600	YOR386W 500 bp YOR386W phr1 1-1698 photolyase
#601	YPL002C_YPL001W 276 bp YPL002C SNF8 1-702  YPL001W HAT1 1-1125 histone acetyltransferase
#602	YPL009C_YPL008W 448 bp YPL009C  1-3117  YPL008W CHL1 1-2586 kinetochore protein in the DEAH box family
#603	YPL016W 500 bp YPL016W swi1 1-3945 Zinc-finger transcription factor
#604	YPL023C_YPL022W 384 bp YPL023C MET12 1-1974 putative methylenetetrahydrofolate reductase (mthfr) YPL022W rad1 1-3303 UV endonuclease
#605	YPL031C_YPL030W 505 bp YPL031C pho85 1-17, 120-1020 negative transcriptional regulator, protein kinase homolog YPL030W  1-1704 
#606	YPL037C_YPL036W 942 bp YPL037C EGD1 1-474  YPL036W pma2 1-2844 plasma membrane ATPase
#607	YPL042C 410 bp YPL042C ssn3 1-1668 a cyclin(SSN8)-dependent serine\/threonine protein kinase
#608	YPL043W 282 bp YPL043W NOP4 1-2058 RNA recognition motif-containing protein
#609	YPL046C_YPL045W 316 bp YPL046C ELC1 1-300 Elongin C transcription elongation factor YPL045W vps16 1-2397 Vacuolar sorting protein
#610	YPL049C_YPL048W 561 bp YPL049C DIG1 1-1359 MAP kinase-associated protein YPL048W cam1 1-1248 Calciuim and phospholipid binding protein homologous to translation elongation factor-1 gamma (EF-1 gamma)
#611	YPL075W 500 bp YPL075W GCR1 1-2535 trans-acting positive regulator of the enolase and glyceraldehyde-3-phosphate dehydrogenase gene families
#612	YPL082C_YPL081W 866 bp YPL082C mot1 1-5604 putative helicase YPL081W RPS9A 1-7, 509-1095 Ribosomal protein S9A (S13) (rp21) (YS11)
#613	YPL083C 374 bp YPL083C SEN54 1-1404 54kDa subunit of the tetrameric tRNA splicing endonuclease
#614	YPL089C_YPL088W 814 bp YPL089C RLM1 1-2031 serum response factor-like protein YPL088W  1-1029 
#615	YPL119C_YPL118W 363 bp YPL119C DBP1 1-1854 putative ATP-dependent RNA helicase\; Dead box protein YPL118W  1-1035 
#616	YPL122C 194 bp YPL122C TFB2 1-1542 TFIIH subunit Tfb2\; has homology to CAK and human IIH subunits
#617	YPL127C_YPL126W 605 bp YPL127C HHO1 1-777 histone H1 YPL126W  1-2691 
#618	YPL128C 500 bp YPL128C TBF1 1-1689 TTAGGG repeat binding factor
#619	YPL129W 239 bp YPL129W  1-9, 115-840 
#620	YPL133C_YPL132W 487 bp YPL133C  1-1341  YPL132W COX11 1-903 Putative heme A biosynthetic enzyme involved in forming the formyl group at position 8 of the porphyrin ring
#621	YPL139C 314 bp YPL139C UME1 1-1383 Transcriptional modulator
#622	YPL153C_YPL152W 835 bp YPL153C rad53 1-2466 protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation YPL152W RRD2 1-1077 Resistant to Rapamycin Deletion 2
#623	YPL167C 230 bp YPL167C rev3 1-4515 DNA polymerase
#624	YPL169C_YPL168W 378 bp YPL169C MEX67 1-1800 INvolved in nuclear mRNA export, binds both poly(A) YPL168W  1-1293 
#625	YPL177C 500 bp YPL177C CUP9 1-921 putative DNA binding protein which shows similarity in homeobox domain to human proto-oncogene PBX1
#626	YPL178W 259 bp YPL178W MUD13 1-627 Small subunit of nuclear cap-binding protein complex
#627	YPL190C 500 bp YPL190C  1-2409 
#628	YPL212C_YPL211W 345 bp YPL212C PUS1 1-1635 intranuclear protein which exhibits a nucleotide-specific intron-dependent tRNA pseudouridine synthase activity YPL211W NIP7 1-546 
#629	YPL228W 500 bp YPL228W CET1 1-1650 mRNA capping enzyme beta subunit (80 kDa), RNA 5'-triphosphatase
#630	YPL248C 268 bp YPL248C gal4 1-2646 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type
#631	YPL254W 500 bp YPL254W HFI1 1-1467 transcription factor, member of Ada\/Gcn5 protein complex
#632	YPL266W 322 bp YPL266W DIM1 1-957 dimethyladenosine transferase
#633	YPR010C 500 bp YPR010C  1-3612 
#634	YPR019W 453 bp YPR019W CDC54 1-2802 
#635	YPR025C_YPR026W 820 bp YPR025C CCL1 1-1182 cyclin YPR026W ATH1 1-3636 
#636	YPR033C_YPR034W 505 bp YPR033C hts1 1-1641 cytoplasmic and mitochondrial histidine tRNA synthetases YPR034W ARP7 1-1434 
#637	YPR045C_YPR046W 246 bp YPR045C  1-1413  YPR046W MCM16 1-546 Required for chromosome segregation
#638	YPR052C 305 bp YPR052C NHP6A 1-282 11-kDa nonhistone chromosomal protein
#639	YPR056W 252 bp YPR056W TFB4 1-1017 
#640	YPR057W 328 bp YPR057W BRR1 1-1026 Protein involved in snRNP biogenesis
#641	YPR065W 322 bp YPR065W ROX1 1-1107 site-specific DNA binding protein, repressor
#642	YPR085C_YPR086W 257 bp YPR085C  1-1347  YPR086W SUA7 1-1038 transcription factor TFIIB homolog
#643	YPR101W 278 bp YPR101W SNT309 1-528 splicing factor
#644	YPR104C 500 bp YPR104C FHL1 1-2811 Protein with a domain similar to the fork head DNA-binding domain found in the developmental fork head protein of Drosophila melanogaster and in the HNF-3 family of hepatocyte mammalian transcription factors.
#645	YPR110C_YPR111W 470 bp YPR110C RPC40 1-1008 RNA polymerase III (C) subunit YPR111W dbf20 1-291, 712-1695 kinase required for late nuclear division
#646	YPR133C_YPR133W-A 346 bp YPR133C  1-1233  YPR133W-A TOM5 1-153 Translocase of the Outer Mitochondrial membrane
#647	YPR135W 376 bp YPR135W ctf4 1-2784 DNA polymerase alpha binding protein
#648	YPR162C 340 bp YPR162C ORC4 1-1590 56-kDa subunit of origin recognition complex (ORC)
#649	YPR167C_YPR168W 443 bp YPR167C MET16 1-786 3'phosphoadenylylsulfate reductase YPR168W NUT2 1-474 
#650	YPR174C_YPR175W 256 bp YPR174C  1-666  YPR175W DPB2 1-2079 DNA polymerase epsilon, subunit B
#651	YPR176C_YPR178W 253 bp YPR176C BET2 1-978 Geranylgeranyltransferase Type II beta subunit YPR178W prp4 1-1398 associated with the U4\/U6 snRNP
#652	YPR181C_YPR182W 526 bp YPR181C SEC23 1-2307 cytoplasmic GTPase-activating protein YPR182W SMX3 1-261 Sm or Sm-like snRNP protein
#653	YPR186C_YPR187W 234 bp YPR186C pzf1 1-1290 Transcription factor IIIA (TFIIIA) with putative Zn-fingers YPR187W RPO26 1-20, 97-544 subunit common to RNA polymerases I, II, and III
#654	YPR188C_YPR189W 184 bp YPR188C  1-492  YPR189W ski3 1-4299 Contains 8 copies of the TPR domain
#655	YPR190C_YPR191W 339 bp YPR190C RPC82 1-1965 82-kDa subunit of RNA polymerase III (C) YPR191W QCR2 1-1107 40 kDa ubiquinol cytochrome-c reductase core protein 2
#656	YPR196W 500 bp YPR196W  1-1413 

#Motif 5
TATTACCCGG	173	388	1
TATTACCCGG	204	150	0
TATTACCCGG	632	140	1
TATTACCCGG	635	103	1
TATTACCCGG	230	352	0
TATTACCCGG	468	467	1
TATTACCCGG	187	665	1
TATTACCCGG	549	139	0
TATTACCCGC	626	90	1
TATTACCCGC	276	340	1
TATTACCCGC	310	388	0
TATTACCCGC	389	63	1
TATTACCCGC	142	211	0
TATTACCCGC	450	234	1
TATTACCCGC	57	139	1
TATTACCCGC	21	51	1
CATTACCCGG	45	130	1
CATTACCCGG	269	75	1
CATTACCCGG	244	189	1
CATTACCCGG	402	158	0
CATTACCCGG	471	163	0
CATTACCCGG	516	546	0
CATTACCCGG	548	155	0
CATTACCCGC	225	335	1
CATTACCCGC	100	112	1
CATTACCCGC	318	140	0
CATTACCCGC	129	162	1
CATTACCCGC	482	64	1
TGTTACCCGG	113	278	0
TGTTACCCGG	233	10	1
TGTTACCCGG	64	351	0
TGTTACCCGC	593	242	1
TGTTACCCGC	170	247	1
TGTTACCCGC	445	555	0
TGTTACCCGC	563	211	1
TGTTACCCGC	123	356	0
TGTTACCCGC	550	20	1
TCTTACCCGG	527	175	1
TCTTACCCGG	460	123	1
TCTTACCCGG	242	41	1
TCTTACCCGC	159	64	1
TCTTACCCGC	216	310	1
CCTTACCCGC	546	254	1
**********