AlignACE version 2.2 July 7, 1998 AlignACE -jADE.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YAR015W 503 bp YAR015W ade1 1-921 phosphoribosyl amino imidazolesuccinocarbozamide synthetase #2 YDR408C 546 bp YDR408C ade8 1-645 glycinamide ribotide transformylase #3 YGL234W 600 bp YGL234W ade5,7 1-2409 glycinamide ribotide synthetase and aminoimidazole ribotide synthetase #4 YGR061C 362 bp YGR061C ade6 1-4077 5'-phosphoribosylformyl glycinamidine synthetase #5 YGR204W 300 bp YGR204W ade3 1-2841 encodes the cytoplasmic trifunctional enzyme C1-tetrahydrofolate synthase #6 YLR028C 600 bp YLR028C ADE16 1-1776 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) transformylase\/IMP cyclohydrolase #7 YLR359W 300 bp YLR359W ADE13 1-1449 Adenylosuccinate Lyase #8 YMR120C 453 bp YMR120C ADE17 1-1779 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR) transformylase\/IMP cyclohydrolase #9 YMR300C 463 bp YMR300C ade4 1-1533 phosphoribosylpyrophosphate amidotransferase #10 YNL220W 600 bp YNL220W ade12 1-1302 adenylosuccinate synthetase #11 YOR128C 600 bp YOR128C ade2 1-1716 phosphoribosylamino-imidazole-carboxylase Motif number 1 TGAGTTGGAGTCTTCTTTTCTTGTGAAATATG 2 44 1 TTCTTTTCTT 0.928293 -503 AGCAGAAGGTTCCTCTTTTCTTAAACAAGTAT 2 236 0 TTCTTTTCTT 0.928293 -311 CTAGTGACTCTGACCTGTTTTTTATTCCAGCA 2 386 1 TCCTGTTTTT 0.885672 -161 AGTAAGCAGCTTTTTTTTTTTTTCAAAATTTT 3 345 1 TTTTTTTTTT 0.920387 -256 TCAAAATTTTTCATTTTTTTTTTCAGTTGACT 3 367 1 TTTTTTTTTT 0.920387 -234 TCTTTCCTGCTGACCCGTTTTTCCAAATTTCT 4 101 1 TCCCGTTTTT 0.832307 -262 TTCAATTTTTTTTTTTTTTTTTCAATTTCAAG 4 140 0 TTTTTTTTTT 0.920387 -223 TCTTGCTATTTAACTCTTTCTTTCTTTGAAAA 4 215 1 TCTCTTTCTT 0.940378 -148 AGTGACAATTTTGTTCTTTTTTCCTCTTTATC 5 109 1 TTTCTTTTTT 0.88105 -192 CCATAACCCGTAACTTTTTATTATATATAGAC 5 186 1 TCTTTTTATT 0.87618 -115 ATTTTTTTTCTTTCCTTTTCTTCCCGTTTTTC 6 344 1 TCCTTTTCTT 0.957684 -257 GGCAAATAGATCGTCCTTTTTTCCAGTTTTCA 6 455 1 TTCCTTTTTT 0.871949 -146 TCAGCATTTGTGTTTTTTTCTTGCTCTTTTTA 6 484 1 TTTTTTTCTT 0.933694 -117 TTTTAGCTCTTTTGTTTTTTGTCCCTATT 6 582 0 TTTTGTTTTT 0.828181 -19 TTCTTCGACTTATTTTTTTTTTATTATTCTTC 8 87 1 TTTTTTTTTT 0.920387 -367 TTGCAGTTTTTGACTCTTTTTTCCTTAGCGGA 8 147 1 TCTCTTTTTT 0.92831 -307 GTTCTAACTCTGTCCTGTTATTTTCGGTCAGG 9 125 0 TCCTGTTATT 0.730625 -339 GTAAAGTCCTTCGTTTTTTTTTTTTTCATTTT 9 305 1 TTTTTTTTTT 0.920387 -159 CTGTTTGCTGTACCTCTTTCTTTGCTAAACTT 9 429 0 TCTCTTTCTT 0.940378 -35 AAAAAAGTAATTTCTTTTTCTTACTAGTCTTT 10 436 1 TCTTTTTCTT 0.960965 -165 TTTTTCTTACTAGTCTTTTCTTTTTTGACTTT 10 450 1 TTCTTTTCTT 0.928293 -151 CTTTTTTGACTTTCTCTTTATTTCTTAACTTG 10 469 1 TCTCTTTATT 0.819289 -132 GATGCGGAATTGACTTTTTCTTGAATAATACA 11 218 1 TCTTTTTCTT 0.960965 -383 TGACTCTTGCTGACCTTTTATTAAGAACTAAA 11 458 1 TCCTTTTATT 0.866762 -143 TTTGTCCGATTTTCTTGTTTTTCTTGATTGTT 11 569 0 TCTTGTTTTT 0.893917 -32 * ********* Masking position 8 Map Score: 28.7743 Number of sites scoring better than the average of aligned sites = 12025 Number in coding regions = 2627 Number in noncoding regions = 9398 Number of orfs with sites within 600 bp upstream = 2509 Fraction of orfs with sites within 600 bp upstream = 0.402987 Motif number 2 CGAGTCAGTCTGACTCTTGCGAGAGATGAGG 1 287 1 TGACTCTTCG 0.962946 -217 TTCGAATGAGTGACTCGTTGCTAGTGACTCT 2 366 1 TGACTCGTGC 0.825015 -181 TCGTTGCTAGTGACTCTGACCTGTTTTTTAT 2 380 1 TGACTCTGCC 0.9825 -167 TGATGTGTGTTGGCTCTCACCTGCGCTTGCT 2 508 0 TGGCTCTCCC 0.856185 -39 TTTTTTCAGTTGACTCGCCCCGTCGGTAGTG 3 384 1 TGACTCGCCC 0.953315 -217 AAGTGCCGACTGACTCGTGTCCTGGTAATAA 3 417 1 TGACTCGTTC 0.938735 -184 CAACCGTTCCTGACTCTTTCCTGCTGACCCG 4 87 1 TGACTCTTCC 0.992525 -276 TCTTGCTATTTAACTCTTTCTTTCTTTGAAA 4 215 1 TAACTCTTCT 0.790789 -148 ATATTTGCCATGACTCCTCCCAGTGACAATT 5 88 1 TGACTCCTCC 0.970723 -213 GTTTGAAGTTTGACTCTGCTCGCGGAGGGTA 7 80 0 TGACTCTGTC 0.946843 -221 TATCTATAGATGACTTTCTTCTATATAATAA 7 139 0 TGACTTTCTC 0.594657 -162 TTGCAGTTTTTGACTCTTTTTTCCTTAGCGG 8 147 1 TGACTCTTTT 0.935733 -307 AGAAATGAATTGACTCCTCTCATAACTTGTT 8 277 1 TGACTCCTTC 0.913189 -177 CCCGATGTATTGACTCTTCCTGACCGAAAAT 9 107 1 TGACTCTTCT 0.978675 -357 ATGTTCGTTCTAACTCTGTCCTGTTATTTTC 9 132 0 TAACTCTGCC 0.822193 -332 AAATTACTATTGACTCTACCGGCCATAAGGA 10 139 0 TGACTCTACG 0.734436 -462 GATGCGGAATTGACTTTTTCTTGAATAATAC 11 218 1 TGACTTTTCT 0.790789 -383 TGCTGACAAATGACTCTTGTTGCATGGCTAC 11 405 1 TGACTCTTTT 0.935733 -196 ACTAAGTGATTGACTCTTGCTGACCTTTTAT 11 448 1 TGACTCTTCT 0.978675 -153 ******** ** Masking position 5 Map Score: 19.5865 Number of sites scoring better than the average of aligned sites = 555 Number in coding regions = 413 Number in noncoding regions = 142 Number of orfs with sites within 600 bp upstream = 148 Fraction of orfs with sites within 600 bp upstream = 0.0237713 Motif number 3 GCTGGTTGTGTTTTCTGCTTTGCTATCGTGT 1 128 0 TTTTCTCTTT 0.933917 -376 GACGGTTGGGTTTTATCTTTTGCAGTTGGTA 1 418 1 TTTTATTTTT 0.620486 -86 ACAAGTATAATTTTCCTTTTTGGATTGTACT 2 213 0 TTTTCCTTTT 0.923469 -334 CATCCGGGGGTCTTCTACTTTTGTATGGCTC 3 113 0 TCTTCTCTTT 0.867302 -488 AGTAAGCAGCTTTTTTTTTTTTTCAAAATTT 3 345 1 TTTTTTTTTT 0.904035 -256 TTTTTCAAAATTTTTCATTTTTTTTTTCAGT 3 363 1 TTTTTCTTTT 0.923189 -238 TTCAATTTTTTTTTTTTTTTTTCAATTTCAA 4 141 0 TTTTTTTTTT 0.904035 -222 AGTATATTTCTCTTCTACTTTTATCTTAGCG 4 289 1 TCTTCTCTTT 0.867302 -74 TTTTGTTCTTTTTTCCTCTTTATCGCTTTCG 5 117 1 TTTTCCCTTT 0.947454 -184 AAACCTGTATATTTTTTCTTTAACCAATTTT 6 44 1 ATTTTTCTTT 0.582464 -557 CTTTAACCAATTTTTTTTTTTATAGACCTAG 6 61 1 TTTTTTTTTT 0.904035 -540 TTTCTTGTATTTTTTTTCTTTCCTTTTCTTC 6 336 1 TTTTTTCTTT 0.933673 -265 AATAGCCCTCTCTTTTGCTTTTCTTGAGTTT 6 396 0 TCTTTTCTTT 0.866847 -205 AGAGAGGGCTATTTCCACTTTAAGAATAAGC 6 414 1 ATTTCCCTTT 0.641171 -187 TGTGTTTTTTTCTTGCTCTTTTTAGCGATTA 6 492 1 TCTTGCCTTT 0.690383 -109 TTTTAGCTCTTTTGTTTTTTGTCCCTAT 6 583 0 TCTTTTTTTT 0.813318 -18 ACTTCTGTTTTATTTCATTTTCCTGCTTTGT 7 109 0 TATTTCTTTT 0.602596 -192 TCGGATAGTTTATTTCACTTTAGTTGTAGCA 7 268 0 TATTTCCTTT 0.693799 -33 AGATAATAACTTTTCTTTTTTCCTTAAATCT 9 55 0 TTTTCTTTTT 0.904377 -409 CGTTTTTTTTTTTTTCATTTTAGAAAAATTT 9 316 1 TTTTTCTTTT 0.923189 -148 CCGTACAATTTTATTCACTTTTAAGTCATAG 9 356 1 TTATTCCTTT 0.640263 -108 TTACTTATTATTATTTACTTTGTTAATCTGT 10 394 0 TTATTTCTTT 0.582464 -207 CTTACTAGTCTTTTCTTTTTTGACTTTCTCT 10 455 1 TTTTCTTTTT 0.904377 -146 CATTACTATTTTGCATTTTAATTTAATTA 11 9 1 TTTTGCTTTT 0.763403 -592 TTTATATAAATTTTACCTTTTGATGCGGAAT 11 197 1 TTTTACTTTT 0.67595 -404 ****** **** Masking position 4 Map Score: 18.702 Number of sites scoring better than the average of aligned sites = 13590 Number in coding regions = 3495 Number in noncoding regions = 10095 Number of orfs with sites within 600 bp upstream = 2599 Fraction of orfs with sites within 600 bp upstream = 0.417443 Motif number 4 ATGTATTAGATGGCATCTTCGAGATTAGTA 1 327 0 TGGCATCTTC 0.860598 -177 ATTTCGTATGTGTATTCTTTGTAAGCAATG 1 474 0 TGTATTCTTT 0.832107 -30 TTTGAGTTGGAGTCTTCTTTTCTTGTGAAA 2 42 1 AGTCTTCTTT 0.803445 -505 ACTTTAGAAGTGTCTTCTCTTCATAAACTA 2 437 0 TGTCTTCTCT 0.925077 -110 TAACGTATGGTGGCATCTTTCACAGAC 3 8 0 TGGCATCTTT 0.970398 -593 CGAGCCCTTGTGGCTTCTCTAAGGTACCTG 3 64 0 TGGCTTCTCT 0.969313 -537 AGTAATGCTGTGGCTTCTTTCTTGTTACTT 3 186 0 TGGCTTCTTT 0.987995 -415 TGAACTTGACTTCTTTTGTTATGGAC 4 347 0 TGACTTCTTT 0.969853 -16 ATGGTATATTTGGATTCTTTGTTTGGAATG 6 551 0 TGGATTCTTT 0.926897 -50 GAAGGTAGATTGACTTCTTTGCTGGTCATT 10 111 0 TGACTTCTTT 0.969853 -490 AACATAACACTGACATCTTTAACAACTTTT 11 332 1 TGACATCTTT 0.92761 -269 ********** Masking position 6 Map Score: 9.49162 Number of sites scoring better than the average of aligned sites = 878 Number in coding regions = 695 Number in noncoding regions = 183 Number of orfs with sites within 600 bp upstream = 156 Fraction of orfs with sites within 600 bp upstream = 0.0250562 Motif number 5 GTTTTCTGCTTTGCTATCGTGTAGAACTGG 1 120 0 TTGCTATCGT 0.95517 -384 ACCCGCCGTAACGCTCTCGTCGTCAC 5 7 0 ACGCTCTCGT 0.977176 -294 TTCCTCTTTATCGCTTTCGTACTATGGTCA 5 129 1 TCGCTTTCGT 0.984199 -172 TTGAATGGTATCGCTATCGTTGTATTGTAA 5 222 0 TCGCTATCGT 0.986959 -79 CCCATTCAATTCGCTCTCGTGACCAAATCG 10 253 1 TCGCTCTCGT 0.993994 -348 ********** Masking position 5 Map Score: 2.28013 Number of sites scoring better than the average of aligned sites = 55 Number in coding regions = 46 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 6 ACTTACTATCTGGTGCGGTGAATGGGTGTATACAT 2 129 1 TGGGCGGAAG 0.88873 -418 GCGTTGCAGAAGGAACGTACAAAGAGGTGCTTCTT 3 144 0 AGGACGTAAA 0.918993 -457 AACCCCACACAGGGACAGACAGATATCATAAACTT 3 218 1 AGGACAGAGA 0.639504 -383 CTATGTTCAGAGGCAAGTGCAACCGCTGTTAACCG 3 491 1 AGGAAGTAAG 0.845567 -110 TGGTAGCTCCTGGGACGGTTAACAGCGGTTGCACT 3 506 0 TGGACGGAAG 0.938965 -95 TGTGAGGGGAGGGAGAATGGTTCTCTTAA 3 582 0 AGGGAGGGAG 0.773906 -19 GGAAAGAGTCAGGAACGGTTGAAGGATATTGAAAG 4 73 0 AGGACGGGAG 0.960302 -290 ACTTCGAGGCAGGGACAGCCAATTATTTAAATACG 4 257 0 AGGACAGAAA 0.948866 -106 AGCGATAAAGAGGAAAAAAGAACAAAATTGTCACT 5 109 0 AGGAAAAAAA 0.636092 -192 ACCTGTATCAAGGAGCGGACGAGGGAGTCCTAATT 6 167 1 AGGGCGGGAG 0.926249 -434 CAAGAAAATAAGGTGCGACTAAAAAGAACATGGTG 6 308 0 AGGGCGAAAA 0.896083 -293 CGGGAAGAAAAGGAAAGAAAAAAAATACAAGAAAA 6 335 0 AGGAAGAAAA 0.81906 -266 TACCATAAATAGGGACAAAAAACAAAAGAGCTAAA 6 575 1 AGGACAAAAA 0.865109 -26 CAAACAAAGCAGGAAAATGAAATAAAACAGAAGTT 7 106 1 AGGAAATAAA 0.544195 -195 GTCGAAGAAAAGGAACGATGAAGTAATCAGGTTGA 8 61 0 AGGACGAAAA 0.943211 -393 TCAAGATTTAAGGAAAAAAGAAAAGTTATTATCTT 9 52 1 AGGAAAAAAG 0.75582 -412 GCAAAGAAAGAGGTACAGCAAACAGCAGAATAGAA 9 436 1 AGGACAGAAG 0.970467 -28 CTGGATTCACAGGAACAGGTAAGTGGGACATGTTT 10 289 0 AGGACAGAAG 0.970467 -312 CTGTGAATCCAGATACGGAAAAAAATTGTATTTAA 10 312 1 AGAACGGAAA 0.656484 -289 TCGTTGGATAAGGTAGGGGAAATCGTAACATTACT 10 557 1 AGGAGGGAAG 0.877099 -44 ATGTATAAATTGGTGCGTAAAATCGTTGGATCTCT 11 513 1 TGGGCGTAAG 0.653441 -88 *** **** ** * Masking position 2 Map Score: 10.9634 Number of sites scoring better than the average of aligned sites = 1114 Number in coding regions = 720 Number in noncoding regions = 394 Number of orfs with sites within 600 bp upstream = 337 Fraction of orfs with sites within 600 bp upstream = 0.0541279 Motif number 7 AAATACACGTAGTTTTTAGATAACATTCTCTGCTT 1 20 0 AGTTTAATAA 0.968546 -484 GCCTCTGAACATAGTTTAAATACCAAGTTCAAGCC 3 470 0 ATTTTAATAA 0.841851 -131 ATTGTAAACGAGTCTATATATAATAAAAAGTTACG 5 194 0 AGTATAATAA 0.812483 -107 TTGAGCGTAAAGATATTATATATAAGTATTATGGT 6 247 0 AGATTAATAA 0.968542 -354 TCCTTATTAGAGCCATTAGATAAAACTCAAGAAAA 6 374 1 AGATTAATAA 0.968546 -227 TGCTCTTTTTAGCGATTAGATAACATTCAAGATCT 6 505 1 AGATTAATAA 0.968546 -96 ATAAAACAGAAGTTATTATATAGAAGAAAGTCATC 7 127 1 AGATTAATAA 0.968542 -174 CTGGTAAGAAAGATTTTAGGTACTACACTAAAGGT 8 366 0 AGTTTAGTAA 0.865262 -88 TAAAATCGAGATTATTTAAATACAATTTTTTTCCG 10 327 0 ATTTTAATAA 0.841852 -274 AAAATTTAAGAGATATTAAATATTAGTGAGAAGCC 11 280 1 AGATTAATAA 0.968528 -321 ** **** *** * Masking position 8 Map Score: 3.53806 Number of sites scoring better than the average of aligned sites = 176 Number in coding regions = 68 Number in noncoding regions = 108 Number of orfs with sites within 600 bp upstream = 97 Fraction of orfs with sites within 600 bp upstream = 0.0155798 Motif number 8 ACATTCTCTGCTTGGTAAGAGA 1 3 0 CTTGGTAAGA 0.967212 -501 CTCAAAGAATCTGGGTAAGAATATATAGAA 1 384 0 CTGGGTAAGA 0.978896 -120 TGACTCGTGTCCTGGTAATAACAGCAATAA 3 427 1 CCTGGTAATA 0.967212 -174 GCTATTAGTTGCTGGTAAGAAAGATTTTAG 8 382 0 GCTGGTAAGA 0.952418 -72 GACATTGCACCCGGGTAAGAGGGTAACACT 10 59 0 CCGGGTAAGA 0.992768 -542 TGGCTACGAACCGGGTAATACTAAGTGATT 11 429 1 CCGGGTAATA 0.978896 -172 ********** Masking position 6 Map Score: 2.85194 Number of sites scoring better than the average of aligned sites = 150 Number in coding regions = 70 Number in noncoding regions = 80 Number of orfs with sites within 600 bp upstream = 87 Fraction of orfs with sites within 600 bp upstream = 0.0139737 Motif number 9 CTTTTGCAGTTGGTACTATTAAGAACAATCGAA 1 434 1 TGTACTTAAG 0.8995 -70 CGAGCCCTTGTGGCTTCTCTAAGGTACCTGTGT 3 61 0 TGCTTCTAAG 0.791096 -540 GGAGGGAGAATGGTTCTCTTAAGCTATGATTAA 3 571 0 TGTTCTTAAG 0.982692 -30 TTTTATCTAATGGCTCTAATAAGGAAAAACGGG 6 366 0 TGCTCTTAAG 0.979093 -235 TTAATATTGTTCGTTCCGCTAAGGAAAAAAGAG 8 160 0 TCTTCCTAAG 0.960214 -294 GTAGTAGATTTCGTTCTAATAAGTTTAGCAAAG 9 409 1 TCTTCTTAAG 0.966952 -55 CGGTAATTGCTGATTCCTTTAAGTTTACAGATT 10 189 0 TGTTCCTAAG 0.979093 -412 TATCTGTCTTTGATTCTTTTAAGAAAAGTTATG 11 248 0 TGTTCTTAAG 0.982692 -353 AATCGTTGGATCTCTCTTCTAAGTACATCCTAC 11 533 1 TCCTCTTAAG 0.960214 -68 ** **** **** Masking position 10 Map Score: 3.84618 Number of sites scoring better than the average of aligned sites = 118 Number in coding regions = 100 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 10 ATTCTTTTTCAACCTTCAGGAAAAGTTTCAGAT 1 226 0 AATCAGGAAA 0.904536 -278 GTTCATCCATATTTCACAAGAAAAGAAGACTCC 2 50 0 ATACAAGAAA 0.869224 -497 ATACGTTACCAACCATAAAGAAAGTGGCCGCAC 3 30 1 AATAAAGAAA 0.81467 -571 CGCCATATCTAAGTAACAAGAAAGAAGCCACAG 3 176 1 AAACAAGAAA 0.96739 -425 ATAACTACCTAAGCGTTAAGAAATCGTCTAATC 3 275 1 AATTAAGAAA 0.885732 -326 ATGATTAAGAAAGTAATAAGAAATAACTGCGCT 3 546 0 AAATAAGAAA 0.820474 -55 GGAAAGAAAAAAAATACAAGAAAATAAGGTGCG 6 326 0 AAACAAGAAA 0.96739 -275 GCCATTAGATAAAACTCAAGAAAAGCAAAAGAG 6 385 1 AATCAAGAAA 0.980512 -216 TAATCGCTAAAAAGAGCAAGAAAAAAACACAAA 6 490 0 AAGCAAGAAA 0.93038 -111 AACTGCTTTAAAATTTCATGAAACTAGGCAACT 11 166 0 AATCATGAAA 0.864736 -435 AAAGTTATGTATTATTCAAGAAAAAGTCAATTC 11 224 0 ATTCAAGAAA 0.918519 -377 ATCCTACTATAACAATCAAGAAAAACAAGAAAA 11 559 1 AATCAAGAAA 0.980512 -42 ** ******** Masking position 8 Map Score: 7.14001 Number of sites scoring better than the average of aligned sites = 878 Number in coding regions = 643 Number in noncoding regions = 235 Number of orfs with sites within 600 bp upstream = 196 Fraction of orfs with sites within 600 bp upstream = 0.0314809 Motif number 11 CAGATATCATAAACTTGAATCTACTATATC 3 237 1 AAACTTGAAT 0.830136 -364 ATTTCTCGTCGAACTTGAAATTGAAAAAAA 4 127 1 GAACTTGAAA 0.878386 -236 TGAACTTGACTTCTTTTGTTA 4 352 0 GAACTTGACT 0.925133 -11 GTATTGATTAGATCTTGAATGTTATCTAAT 6 519 0 GATCTTGAAT 0.951754 -82 CAATAAAGGTGATCATGAAGACGACGAAGG 7 12 0 GATCATGAAG 0.93193 -289 TTTTTCCTTAAATCTTGAAAAACTTATACA 9 40 0 AATCTTGAAA 0.641456 -424 GAGTTAGAACGAACATGAATAATAAAATAT 9 147 1 GAACATGAAT 0.943186 -317 TATAATCTGGGATCATGAATCCGAATGACT 9 174 1 GATCATGAAT 0.942996 -290 AATTTAATTAGAACTTGACTAGCGCACTAC 11 30 1 GAACTTGACT 0.925133 -571 GATCTTTTTCGAGCATGAAGTTTCTTTTAT 11 127 0 GAGCATGAAG 0.833539 -474 TGTAATAATCAATCATGACGTAAGAAATGT 11 371 0 AATCATGACG 0.679696 -230 ********** Masking position 8 Map Score: 1.88607 Number of sites scoring better than the average of aligned sites = 1202 Number in coding regions = 997 Number in noncoding regions = 205 Number of orfs with sites within 600 bp upstream = 164 Fraction of orfs with sites within 600 bp upstream = 0.0263412 Motif number 12 GGACGTGTTCAAGTCGAGAAAGAGGTGAAAT 1 51 0 AAGTCGAGAA 0.930595 -453 CTTTTCCTGAAGGTTGAAAAAGAATGCCATA 1 234 1 AGGTTGAAAA 0.925239 -270 ACCAGATAGTAAGTTGAAAAGTGTATCATCT 2 112 0 AAGTTGAAAG 0.858609 -435 GACACTTCTAAAGTTGAATAACGCTCCTAGC 2 453 1 AAGTTGAAAA 0.969921 -94 GTCGAACTTGAAATTGAAAAAAAAAAAAAAA 4 134 1 AAATTGAAAA 0.717576 -229 ACAACTTTACAAGTCAAATAAGAAATC 5 284 1 AAGTCAAAAA 0.927722 -17 GCTACAACTAAAGTGAAATAAACTATCCGAA 7 269 1 AAGTGAAAAA 0.784733 -32 TGAAGTAATCAGGTTGAAAAAATGTTCATAG 8 47 0 AGGTTGAAAA 0.925239 -407 AAAAAAAAATAAGTCGAAGAAAAGGAACGAT 8 77 0 AAGTCGAAAA 0.972173 -377 AATAAAGAGAAAGTCAAAAAAGAAAAGACTA 10 460 0 AAGTCAAAAA 0.927722 -141 TTTATAAGGCAAGTTAAGAAATAAAGAGAAA 10 479 0 AAGTTAAGAA 0.819721 -122 ******** ** Masking position 7 Map Score: 2.20784 Number of sites scoring better than the average of aligned sites = 861 Number in coding regions = 618 Number in noncoding regions = 243 Number of orfs with sites within 600 bp upstream = 207 Fraction of orfs with sites within 600 bp upstream = 0.0332477 Motif number 13 TTTAGTCTTTATGCTGAAATCTATCTTCGA 2 322 0 ATGCTGAAAT 0.933916 -225 AAAAACACAAATGCTGAAAACTGGAAAAAA 6 471 0 ATGCTGAAAA 0.963463 -130 GGAAGATATTATGCTGCCATTGCTTTTACA 7 40 0 ATGCTGCCAT 0.972068 -261 CAAATTGCGTATGCTGCCAAAGAGCGAAGA 8 114 0 ATGCTGCCAA 0.984888 -340 ATGACTGCTCATGCGGCAAATGTCAGAGCT 9 198 1 ATGCGGCAAA 0.938123 -266 TATTACAGCTATGCTGACAAATGACTCTTG 11 394 1 ATGCTGACAA 0.976445 -207 ********** Masking position 2 Map Score: 1.22401 Number of sites scoring better than the average of aligned sites = 187 Number in coding regions = 152 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 14 TGAAGTGGAGTTCATCCATATTTCACAAGA 2 62 0 TTCATCCATA 0.791387 -485 CTCCACTTCATTCTTTCATATTCATATTAA 2 82 1 TTCTTTCATA 0.921671 -465 AACCAATTTTTTTTTTTATAGACCTAGAGC 6 65 1 TTTTTTTATA 0.818455 -536 ATAGATGACTTTCTTCTATATAATAACTTC 7 135 0 TTCTTCTATA 0.921671 -166 TGAAGTATAATTGTTTTATATGGCTACTAT 7 186 0 TTGTTTTATA 0.910376 -115 TGCATTATTATTGATCTATATACGGTTCTA 8 17 0 TTGATCTATA 0.766072 -437 TAAGTAAATATTGATTTATACATGTATAAG 9 18 1 TTGATTTATA 0.821411 -446 TTGCTGGTCATTTTTTCATATGTGATGTGC 10 93 0 TTTTTTCATA 0.762465 -508 CTACAATCGTTTCTTTTATAAGGCAAGTTA 10 494 0 TTCTTTTATA 0.942943 -107 AGCATGAAGTTTCTTTTATAATAACCTGGT 11 116 0 TTCTTTTATA 0.942943 -485 ********** Masking position 5 Map Score: 0.961284 Number of sites scoring better than the average of aligned sites = 728 Number in coding regions = 424 Number in noncoding regions = 304 Number of orfs with sites within 600 bp upstream = 227 Fraction of orfs with sites within 600 bp upstream = 0.03646 Motif number 15 TAGTCAATGTATACACCCATTCACCGCACC 2 140 0 ATACACCCAT 0.886194 -407 CTCGTTTACAATACAACGATAGCGATACCA 5 217 1 ATACAACGAT 0.976166 -84 GCTACTATTAATACAACGATAATATATCTA 7 164 0 ATACAACGAT 0.976166 -137 CAAACTTTAAATACACCGAAGCTCTGACAT 9 217 0 ATACACCGAA 0.947922 -247 CCCCTACCTTATCCAACGAAAAGCTTAATA 10 546 0 ATCCAACGAA 0.947917 -55 TAGAAGAGAGATCCAACGATTTTACGCACC 11 524 0 ATCCAACGAT 0.971287 -77 ********** Masking position 5 Map Score: 0.604321 Number of sites scoring better than the average of aligned sites = 135 Number in coding regions = 107 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 29 Fraction of orfs with sites within 600 bp upstream = 0.00465789