AlignACE version 2.2 July 7, 1998 AlignACE -jARG.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YDR173C 477 bp YDR173C arg82 1-1068 Regulator of arginine-responsive genes with ARG80 and ARG81 #2 YER069W 596 bp YER069W arg5,6 1-2592 N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase #3 YHR018C 491 bp YHR018C arg4 1-1392 argininosuccinate lyase #4 YJL088W 300 bp YJL088W arg3 1-1323 Ornithine carbamoyltransferase #5 YJL071W 300 bp YJL071W ARG2 1-1725 Acetylglutamate Synthase #6 YML099C 300 bp YML099C arg81 1-2643 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type #7 YMR042W 300 bp YMR042W arg80 1-534 Regulator of arginine-responsive genes with ARG81 and ARG82 #8 YOL140W 300 bp YOL140W arg8 1-1272 Acetylornithine aminotransferase #9 YOL058W 600 bp YOL058W arg1 1-1263 arginosuccinate synthetase #10 YOR130C 600 bp YOR130C ARG11 1-879 mitochondrial integral membrane protein Motif number 1 CAACGGTCGGATGAAAAAAAAAAGCGGGAAA 1 207 1 AGAAAAAAAA 0.972631 -271 AAAAAAAAGCGGGAAAAAAAATGGTGAAAAA 1 222 1 GGAAAAAAAA 0.991151 -256 GTGAAAAAAATTTCTACTTAG 1 467 0 GGAAAAAAAT 0.971212 -11 ATATATTCATGAGAAATAAAAATAGATAAAA 2 50 0 GGAAATAAAA 0.894482 -547 AACGAAATGCAAGAAAAAAAAATCTCACCCA 2 96 1 AGAAAAAAAA 0.972631 -501 TGTGATTTAAGTGAAAAAATTAGCGAAGCAG 2 305 0 GGAAAAAATT 0.826936 -292 AGCTCTTTATATGAAAAAAAAAAATAGAAGA 2 434 0 AGAAAAAAAA 0.972631 -163 ACAAATAATCGAAAAAAAAAAACTGTTCTAG 3 234 0 GAAAAAAAAA 0.907369 -258 ATTGAAACATGTGAAAAAAAAAAAAAAGGAT 3 352 1 GGAAAAAAAA 0.991151 -140 TACGTCTTCTAAGAAAAAATATTTAGATCAT 4 113 1 AGAAAAAATA 0.834251 -188 TTTCACGCTGGAGAAAAAAAAGGTTAGTCAT 5 174 1 GGAAAAAAAA 0.991151 -127 TCAAAAATAAATGAAAAAAAAATACACCTTG 6 195 1 AGAAAAAAAA 0.972631 -106 CGAATGAAAAGTAAAAAAAAATTAATGCGAA 7 73 0 GAAAAAAAAA 0.907369 -228 TAGACGGTAAGTGAAAAAAATTTGATGATTC 7 158 1 GGAAAAAAAT 0.971212 -143 TAACTAATGTGGGAAAAAAAATGGCGCAGGA 7 251 0 GGAAAAAAAA 0.991151 -50 ATTTAAAAGCGTGAAAAAAAAATTGCAACAT 8 199 1 GGAAAAAAAA 0.991151 -102 ATTCTAACAAACGAAAAAAATGTTCGCAGTC 8 258 0 AGAAAAAAAT 0.914555 -43 GGTTGCGACAGCGGAAAAAAACGGGCCAAAT 9 280 0 GGGAAAAAAA 0.926275 -321 * ********* Masking position 6 Map Score: 37.9659 Number of sites scoring better than the average of aligned sites = 759 Number in coding regions = 200 Number in noncoding regions = 559 Number of orfs with sites within 600 bp upstream = 490 Fraction of orfs with sites within 600 bp upstream = 0.0787022 Motif number 2 GAAAAAAAAATCTCACCCATTTTTTTAAACCTTT 2 108 1 TCTCACTTTT 0.576053 -489 CATTCTTGCAGCGCTGACGCTTTCATACGTTGTA 2 221 0 GCGCTCTTTC 0.976509 -376 GGAACCTGCTTCGCTAATTTTTTCACTTAAATCA 2 300 1 TCGCTTTTTC 0.804273 -297 TTACCACCATTCGGCCACAGTTTTTTGATGTAGA 2 392 0 TCGGCCTTTT 0.834719 -205 AACAACACGCGCGCAAGCTCTTTATATGAAAAAA 2 446 0 GCGCACTTTA 0.848415 -151 GTGTTGTTGTTCGCTATCCATTTCCATTAGGAAC 2 472 1 TCGCTCTTTC 0.989372 -125 ACTTCAGATCTCTCTTTCTTTTGCCTTTAGTGGT 2 552 0 TCTCTCTTGC 0.907285 -45 TTAATTGCCTGCGCCAACCATTTATTGTTATAAC 3 124 0 GCGCCCTTTA 0.929154 -368 GTTCTGTGCTTCGCTGACCTTTTATAATCCTTTT 3 375 0 TCGCTCTTTA 0.964382 -117 AAACCCTGATTCGCCATCAGTTACGTCTTCTAAG 4 92 1 TCGCCCTTAC 0.974674 -209 AGGACACTAGTCGGTTACTTTTATC 5 286 1 TCGGTCTTAT 0.639525 -15 CAGCTCACCCTCGCCTGCCGTTACCTTTTGGATT 6 93 1 TCGCCCTTAC 0.974674 -208 CAATGACTCTTCGCCTGCGGTTTCCGCTAGAACT 6 162 1 TCGCCCTTTC 0.990195 -139 GGTACTGATATCGGTAACTATTGCCCACTAAAGC 6 252 0 TCGGTCTTGC 0.939473 -49 TCATTGGAGGCGGTGCCACTTGCTACGGCTTTG 8 10 1 GCGGTCTTGC 0.873909 -291 AAAAAAATGTTCGCAGTCACTTGCACTTAAGAGT 8 242 0 TCGCACTTGC 0.963031 -59 TTTTCCGCTGTCGCAACCTATTTCCATTAACGGT 9 293 1 TCGCACTTTC 0.977323 -308 GTAATCTCTCTCTCCTGCCTTTAAATGACTCTTC 9 335 0 TCTCCCTTAA 0.660613 -266 TGCCCACAGTTCTCTCTCTCTTTACTTCTTGTAT 9 494 1 TCTCTCTTTA 0.824825 -107 ***** * **** Masking position 11 Map Score: 17.1592 Number of sites scoring better than the average of aligned sites = 1285 Number in coding regions = 978 Number in noncoding regions = 307 Number of orfs with sites within 600 bp upstream = 257 Fraction of orfs with sites within 600 bp upstream = 0.0412785 Motif number 3 ATGCTATGGCATTATTCATTAGCCAGATAC 2 166 0 ATTATTCATT 0.711325 -431 TTTTCTATGAATTAGTCATTCTTGCAGCGC 2 241 0 ATTAGTCATT 0.954987 -356 TTGATGTAGACTGAGTCATTCGGATAAGAA 2 372 0 CTGAGTCATT 0.85435 -225 AAAAAAATAGAAGAGTCATCAATTACCACC 2 418 0 AAGAGTCATC 0.742846 -179 CCTCTCTCTAATTATTCATTGATTTATTCA 3 85 1 ATTATTCATT 0.711325 -407 TCTTGTGGTGGTTACTCATTGGCAGAATCC 3 269 1 GTTACTCATT 0.866877 -223 TATCCAAAAAGTGAGTCATTCATCTACTAA 3 311 0 GTGAGTCATT 0.968266 -181 GCTCCTTCGTATTACTCATTCAGCTCTTCC 4 240 1 ATTACTCATT 0.879407 -61 ATGAGTCACGACGTGACCCT 4 291 0 ATGAGTCACG 0.882708 -10 GAAAAAAAAGGTTAGTCATCACTGATCTTC 5 186 1 GTTAGTCATC 0.881069 -115 ACCGCAGGCGAAGAGTCATTGATAACAAAG 6 153 0 AAGAGTCATT 0.880772 -148 TAAGACCTACATTAGTCACTGATCCAAAGC 8 38 0 ATTAGTCACT 0.94567 -263 AGCTCGCTATGTGACTCACTTAAAGTACAT 8 120 1 GTGACTCACT 0.895881 -181 AGAGCGCTATGTTAGTCACTACTGACGGCT 9 211 1 GTTAGTCACT 0.939552 -390 CAAATGCGACATGAGTCACTAAAAAATCAC 9 255 0 ATGAGTCACT 0.965557 -346 TGCCGTATGGAAGAGTCATTTAAAGGCAGG 9 326 1 AAGAGTCATT 0.880772 -275 GGAGAGAGAGATTACTCATCTTCATTGGAT 9 354 1 ATTACTCATC 0.740368 -247 CGAGCTCAAGGTGAGTCACGATGCAGAACT 10 368 0 GTGAGTCACG 0.87047 -233 ********** Masking position 6 Map Score: 15.3773 Number of sites scoring better than the average of aligned sites = 515 Number in coding regions = 393 Number in noncoding regions = 122 Number of orfs with sites within 600 bp upstream = 102 Fraction of orfs with sites within 600 bp upstream = 0.0163829 Motif number 4 TCTACCAATTGGCTTCGAGAACGTGGTTTTT 1 248 0 GGCTCGAGAA 0.876253 -230 TAGTCATTCTTGCAGCGCTGACGCTTTCATA 2 228 0 TGCACGCTGA 0.954515 -369 GCACGGAACCTGCTTCGCTAATTTTTTCACT 2 296 1 TGCTCGCTAA 0.963719 -301 CAGAGTTCTGTGCTTCGCTGACCTTTTATAA 3 382 0 TGCTCGCTGA 0.930601 -110 CTTTTTTTTCTCCAGCGTGAAATTTCTTGTG 5 165 0 TCCACGTGAA 0.833611 -136 CATCAACAACTGCAACATGAAATCCAAAAGG 6 116 0 TGCACATGAA 0.9109 -185 AAAAAAAAATTGCAACATGAAGAAAATTCGA 8 212 1 TGCACATGAA 0.9109 -89 TCTTCCATACGGCACCGTTAATGGAAATAGG 9 309 0 GGCACGTTAA 0.940904 -292 CTCCCCATTGTGCAGCGATAAGGAACATTGT 9 533 1 TGCACGATAA 0.97177 -68 GCTGCTGTTGTGCTTCATTAAGACTGGTCAA 10 235 0 TGCTCATTAA 0.86507 -366 AGGACTAAGTTGCAACGATGAAACTACAATG 10 327 0 TGCACGATGA 0.945586 -274 GTTCCAGTTCTGCATCGTGACTCACCTTGAG 10 363 1 TGCACGTGAC 0.890089 -238 ACTATACCCGTGCTTCGATAATTTCACACTT 10 498 0 TGCTCGATAA 0.956514 -103 **** ****** Masking position 6 Map Score: 5.90551 Number of sites scoring better than the average of aligned sites = 570 Number in coding regions = 412 Number in noncoding regions = 158 Number of orfs with sites within 600 bp upstream = 128 Fraction of orfs with sites within 600 bp upstream = 0.0205589 Motif number 5 TTCCACGTCAAAGGTTTAAAAAAATGGGTGAGATTTTTT 2 112 0 AGTAAAAAGT 0.97593 -485 CTTTATATGAAAAAAAAAAATAGAAGAGTCATCAATTAC 2 422 0 AAAAAAAAGT 0.781217 -175 GAAACATGTGAAAAAAAAAAAAAAGGATTATAAAAGGTC 3 355 1 AAAAAAAAGT 0.781217 -137 AATTGCTATCTCTGTTTTCAAATAGGGATAACCTTTGTG 4 19 0 TGTTCAAAGT 0.607469 -282 CTGAAATAAGACTAGTTTCATAGACGCATGTCACTACCG 5 30 0 AATTCAAAGT 0.744913 -271 TAACTATGAAATGGTTAACAAAAAAGAGTTTTATACTTA 5 88 0 AGTACAAAGT 0.980802 -213 GAAATTTCACGCTGGAGAAAAAAAAGGTTAGTCATCACT 5 170 1 GGAAAAAAGT 0.745335 -131 ATATGTCTAGGAAGCTGAAAAAAACGAATCTGTTTAACA 6 48 0 GGTAAAAAGT 0.921684 -253 GCGAAGAGTCATTGATAACAAAGAAGGTTCATCAACAAC 6 137 0 AGTACAAAGT 0.980802 -164 CTAAAGCATCAAATCTAAAAGAGATGCTTTTCGCAAGGT 6 220 0 ATTAAAAAGT 0.861999 -81 TTTAAGGGCTATAGATAACAGAAAAGGTTATGGCGATTA 9 112 0 AGTACAAAGT 0.980801 -489 TGAGTCACTAAAAAATCACATAAATGACTGGAGAGCCGT 9 235 0 AATACAAAGT 0.947623 -366 CTAAATCACTTGGAATTAAACACAAGGATTTTGGTCGGC 10 145 0 TATAAAAAGT 0.72932 -456 CTTCATTAAGACTGGTCAAAAACACGGATCCAGCAGCAA 10 215 0 AGTAAAAAGT 0.97593 -386 TGAGCTCGAAAAATGTGACATATACGTTTTCCGCTGTGG 10 390 1 ATTACAAAGT 0.887269 -211 TGAGTTCCCTATAGGTTAAAGAAAAGTTTCTACGACAAA 10 550 0 AGTAAAAAGT 0.975929 -51 * * * *** * * * * Masking position 10 Map Score: 10.3309 Number of sites scoring better than the average of aligned sites = 563 Number in coding regions = 383 Number in noncoding regions = 180 Number of orfs with sites within 600 bp upstream = 125 Fraction of orfs with sites within 600 bp upstream = 0.0200771 Motif number 6 GATGAAAAAAAAAAGCGGGAAAAAAAATGG 1 216 1 AAAAGCGGGA 0.935725 -262 GATTACTGGTAAAAAAGGGATCTCCAATGG 1 387 0 AAAAAAGGGA 0.911631 -91 AAAGGTTTAAAAAAATGGGTGAGATTTTTT 2 112 0 AAAAATGGGT 0.816253 -485 ATTTCGTTGAAAAAATGTGATTTAAGTGAA 2 321 0 AAAAATGTGA 0.967878 -276 GCGCAAATTGAAACATGTGAAAAAAAAAAA 3 346 1 AAACATGTGA 0.850167 -146 GGTAAGTGAAAAAAATTTGATGATTCAGGT 7 163 1 AAAAATTTGA 0.703632 -138 ATTATTTCGTAAAAAAGTGCACAATGACGG 8 153 0 AAAAAAGTGC 0.825879 -148 CGCTCTATTTAAAAGCGTGAAAAAAAAATT 8 193 1 AAAAGCGTGA 0.939638 -108 GACAGCGGAAAAAAACGGGCCAAATGCGAC 9 275 0 AAAAACGGGC 0.909045 -326 CTTGAGCTCGAAAAATGTGACATATACGTT 10 388 1 AAAAATGTGA 0.967878 -213 ATAGATTCAGAAAAGTGTGAAATTATCGAA 10 486 1 AAAAGTGTGA 0.949679 -115 ********** Masking position 3 Map Score: 4.53596 Number of sites scoring better than the average of aligned sites = 966 Number in coding regions = 537 Number in noncoding regions = 429 Number of orfs with sites within 600 bp upstream = 353 Fraction of orfs with sites within 600 bp upstream = 0.0566977 Motif number 7 CATGGATATGTGCATACGTGTGCCTAAGTAG 1 444 1 TGATACGTGT 0.988518 -34 TGCCTTTAGTGGTATATGTGTTAAGTATATT 2 534 0 GGATATGTGT 0.927673 -63 TATAAATATTTGTATATATGTGAGCGCTCAC 3 32 0 TGATATATGT 0.843915 -460 AATTTAAATTTGTATCTGTGTTGAAATCTAC 4 60 0 TGATCTGTGT 0.980521 -241 GTATTTCTTTTGTATCCGTGTATATTAGAAC 9 562 0 TGATCCGTGT 0.990473 -39 GTAGTTATGTATACGAGTCATACAATTC 10 8 1 TGATACGAGT 0.947015 -593 CTGTTGCTGCTGGATCCGTGTTTTTGACCAG 10 212 1 TGATCCGTGT 0.990473 -389 ** ******** Masking position 4 Map Score: 2.89142 Number of sites scoring better than the average of aligned sites = 121 Number in coding regions = 66 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 8 TCACTTCAGATCTCTCTTTCTTTTGCCTTT 2 558 0 TCTCTCTTTC 0.977863 -39 TTTACGTTCCTCCCTCTCTCTAATTATTCA 3 73 1 TCCCTCTCTC 0.99038 -419 AGATGAGTAATCTCTCTCTCCTGCCTTTAA 9 345 0 TCTCTCTCTC 0.994334 -256 TGCCCACAGTTCTCTCTCTCTTTACTTCTT 9 494 1 TCTCTCTCTC 0.994334 -107 ********** Masking position 5 Map Score: 2.74499 Number of sites scoring better than the average of aligned sites = 112 Number in coding regions = 29 Number in noncoding regions = 83 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 9 CCCTGAGGGCCCGCTGGGACTAATTGGTAC 1 73 1 CCGCTGGGAC 0.971053 -405 TTTCATCCGACCGTTGTGGCGGAGAGAAGC 1 193 0 CCGTTGTGGC 0.986749 -285 TTCAGGTGAACCGCTATGGAAAGGCACGTA 7 186 1 CCGCTATGGA 0.920119 -115 CCGTTTTTTTCCGCTGTCGCAACCTATTTC 9 287 1 CCGCTGTCGC 0.991003 -314 TATACGTTTTCCGCTGTGGCCGCTGTGGCC 10 410 1 CCGCTGTGGC 0.997926 -191 GCGATTCTTGACGCTGCGGCCACAGCGGCC 10 427 0 ACGCTGCGGC 0.971053 -174 ********** Masking position 5 Map Score: 2.30715 Number of sites scoring better than the average of aligned sites = 126 Number in coding regions = 88 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 10 TCAGGGCTGGTCTACTGCCTTATACTCTAG 1 49 0 TCTACTGCCT 0.857202 -429 TTCAACGAAATCTCTTGCGCAGTTGGTTGG 2 340 1 TCTCTTGCGC 0.938833 -257 GAAAAATTAATTGCCTGCGCCAACCATTTA 3 134 0 TTGCCTGCGC 0.968572 -358 ACCTTTTTTTTCTCCAGCGTGAAATTTCTT 5 168 0 TCTCCAGCGT 0.939992 -133 CAGCTCACCCTCGCCTGCCGTTACCTTTTG 6 93 1 TCGCCTGCCG 0.982713 -208 CAATGACTCTTCGCCTGCGGTTTCCGCTAG 6 162 1 TCGCCTGCGG 0.988978 -139 GCTATGCGATTTTCCTGCGCCATTTTTTTT 7 239 1 TTTCCTGCGC 0.969188 -62 GTAATCTCTCTCTCCTGCCTTTAAATGACT 9 339 0 TCTCCTGCCT 0.981737 -262 ********** Masking position 1 Map Score: 3.25509 Number of sites scoring better than the average of aligned sites = 190 Number in coding regions = 137 Number in noncoding regions = 53 Number of orfs with sites within 600 bp upstream = 48 Fraction of orfs with sites within 600 bp upstream = 0.0077096 Motif number 11 GAGTGTTCCAGGCAGAGTTGCCCCCCGTGG 1 128 1 GGCAGAGTTG 0.927488 -350 TAGTCATTCTTGCAGCGCTGACGCTTTCAT 2 229 0 TGCAGCGCTG 0.895994 -368 ATGGAGCCTTGGCAGATCAGGTTATTTGAT 3 194 0 GGCAGATCAG 0.955999 -298 CTCACTTTTTGGATAAGCTGGCGCAAATTG 3 326 1 GGATAAGCTG 0.816406 -166 TGCTATCAGAGGAAGAGCTGAATGAGTAAT 4 250 0 GGAAGAGCTG 0.986758 -51 GAGGATCAACGGCTGATCTGAAATAAGACT 5 56 0 GGCTGATCTG 0.970391 -245 TGACTCCATGGGAAGATCAGTGATGACTAA 5 197 0 GGAAGATCAG 0.91707 -104 CGGCAGGCGAGGGTGAGCTGGATAAGATAT 6 83 0 GGGTGAGCTG 0.958209 -218 CCTCTTTTGGTGATGAGCAGCATCACAGAA 7 108 1 TGATGAGCAG 0.866717 -193 TGAGTCACGATGCAGAACTGGAACGTACTA 10 357 0 TGCAGAACTG 0.842721 -244 ********** Masking position 2 Map Score: 1.74677 Number of sites scoring better than the average of aligned sites = 862 Number in coding regions = 701 Number in noncoding regions = 161 Number of orfs with sites within 600 bp upstream = 144 Fraction of orfs with sites within 600 bp upstream = 0.0231288 Motif number 12 TGGGACAAAATGGAATAAGATAAAGCCATT 1 362 1 TGGAATAAGA 0.9755 -116 ACTGAGTCATTCGGATAAGAATTCCAACCA 2 363 0 TCGGATAAGA 0.934751 -234 CACAGAACTCTGAGATAAGACTACCTTTCT 3 401 1 TGAGATAAGA 0.9755 -91 ACGGCTGATCTGAAATAAGACTAGTTTCAT 5 48 0 TGAAATAAGA 0.962011 -253 GCCCAGCCACTGAGATAAGAGCGCTATGTT 9 194 1 TGAGATAAGA 0.9755 -407 CCTGCATGGATGGAATAGGATTGGTGCTAA 10 180 0 TGGAATAGGA 0.935734 -421 ********** Masking position 5 Map Score: 1.09139 Number of sites scoring better than the average of aligned sites = 133 Number in coding regions = 90 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 13 GAATTCACTCAGATTCTCTCCAGTACCACGG 1 152 0 AGATTCTCCC 0.98633 -326 CCCTTCCGGAAGCTTCTCTCCGCCACAACGG 1 182 1 AGCTTCTCCC 0.983558 -296 TGGGTAACTAAGTATCTCACCAAAATGTCTT 1 313 1 AGTATCTCCC 0.943954 -165 TCATGAATATATAATCTCTCCGTTTATAACG 2 69 1 ATAATCTCCC 0.972407 -528 GCAAGAAAAAAAAATCTCACCCATTTTTTTA 2 104 1 AAAATCTCCC 0.933098 -493 TCAATTGCGAATATTCTCCCCTAGCTAAAGA 3 428 0 ATATTCTCCC 0.978672 -64 TACTTCTTGTATCTTGTCTCCCCATTGTGCA 9 516 1 ATCTTGTCCC 0.879713 -85 ******** ** Masking position 1 Map Score: 1.29675 Number of sites scoring better than the average of aligned sites = 181 Number in coding regions = 142 Number in noncoding regions = 39 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 14 GATAATCGAGTCGGGTAATATTTCTCAGAAGTA 1 277 1 TGGAATATTT 0.869063 -201 TAAGCTACTAATGGAAATTGTTTAACTGATTAC 1 411 0 AGGATTGTTT 0.929349 -67 TAATGCAAACAAGAAAAATATTTAGAGTCGGA 2 10 0 AGAAATATTT 0.876342 -587 GATATATATCATGATGATTATTTTCTATGAATT 2 258 0 AGAATTATTT 0.950881 -339 AGGAACATTTTTGGATATTATTTTTCAGACCCG 2 500 1 TGGATTATTT 0.947727 -97 GAATCCCGATAGGAGCATTATTTCGCGATTGCT 8 75 0 AGAATTATTT 0.950881 -226 AGAGCGGAAAAAGGCCATTATTTCGTAAAAAAG 8 166 0 AGGATTATTT 0.980208 -135 AGAAAAGGTTATGGCGATTATTTAATTGTGTTA 9 99 0 AGGATTATTT 0.980208 -502 * ** ******* Masking position 7 Map Score: 0.876351 Number of sites scoring better than the average of aligned sites = 233 Number in coding regions = 151 Number in noncoding regions = 82 Number of orfs with sites within 600 bp upstream = 53 Fraction of orfs with sites within 600 bp upstream = 0.00851269 Motif number 15 GTTGAAAAAATGTGATTTAAGTGAAAAAATTAG 2 313 0 TGTTTAAGTG 0.978211 -284 CTCTCTTTCTTTTGCCTTTAGTGGTATATGTGT 2 544 0 TTTTTTAGTG 0.817254 -53 CTTTTAGATTTGATGCTTTAGTGGGCAATAGTT 6 238 1 TGATTTAGTG 0.978211 -63 TGACGGATCATGTACTTTAAGTGAGTCACATAG 8 126 0 TGTTTAAGTG 0.978211 -175 GAAGAAAATTCGACTCTTAAGTGCAAGTGACTG 8 230 1 CGATTAAGTG 0.947333 -71 GTCATTTATGTGATTTTTTAGTGACTCATGTCG 9 246 1 TGATTTAGTG 0.978211 -355 TAAGTATTAATGAAGATTAAGTGTGGATAATAC 10 68 0 TGATTAAGTG 0.983181 -533 *** ******* Masking position 10 Map Score: 0.917822 Number of sites scoring better than the average of aligned sites = 116 Number in coding regions = 70 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714