AlignACE version 2.2 July 7, 1998 AlignACE -jBUD.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YCL014W 600 bp YCL014W bud3 1-4104 Cell cycle regulated protein required for axial bud formation\; co-assembles with Bud4p at bud sites #2 YCR038C 309 bp YCR038C bud5 1-1617 GTP\/GDP exchange factor for Rsr1 protein #3 YGR041W 600 bp YGR041W BUD9 1-1644 Among a group of genes whose products are necessary for bud-site selection\; likely involvement in positioning the proximal pole signal #4 YJR092W 600 bp YJR092W BUD4 1-3963 Co-assembles with Bud3p at bud sites #5 YKL092C 300 bp YKL092C BUD2 1-3315 GTPase-activating protein (GAP) for Rsr1p\/Bud1p #6 YLR319C 300 bp YLR319C BUD6 1-2367 Actin Interacting Protein #7 YLR353W 600 bp YLR353W BUD8 1-1812 #8 YOR299W 600 bp YOR299W BUD7 1-2241 BUD site selection Motif number 1 GTATAACCAGAAAAAAGTGAAAAATAAACTAAAAAAG 1 152 0 AAAAAGTAAA 0.965738 -449 AGAATTGACAAAAAAGAACCCTAAGCTATAAATTAGG 1 336 1 AAAAAAAAAT 0.890139 -265 GAACAATTCTAAAAAGGTAAATAAAAACAATGGTAAA 1 417 1 AAAAAGTAAA 0.965738 -184 TCACCGTTAAGAAATGGAGGACAATTAAATGGAATAC 3 319 0 GAAATGAAAA 0.819025 -282 ATTGAAAAATAAAATCGAGGGGAAGCTGGAGATAAAA 3 435 0 AAAATGAAAT 0.883451 -166 AAAAGCTTTAGAAATCAAATTGAAAAATAAAATCGAG 3 453 0 GAAATAAAAA 0.684356 -148 TGCTGTCTTCGAAAAAAAAAATAAGGTGTTAAATGAG 3 514 0 GAAAAAAAAT 0.789348 -87 TGTTGTAAAAAAAAAGGTAGTGAACGTATAAAGTTGG 3 552 0 AAAAAGTAAT 0.956205 -49 CCCGATTTGGAAAAAGGTAAACAACAATGAAATATTC 4 30 1 AAAAAGTAAA 0.965738 -571 AATATCACGCAAAATGGTTCCGAAGATACACCACACA 4 299 1 AAAATGTAAT 0.907285 -302 TAAATTTACCAAAAATGTTGGGAATTTC 5 2 0 AAAAAGTAAT 0.956205 -299 ATCTGCGTGTAAAATTAAATTCAAGAAGTGAAAGAAT 6 109 0 AAAATAAAAA 0.824195 -192 CAAGAAAAGGGAAAAAGAGTAGAAGCTGGCTGCCAAA 6 239 1 GAAAAGAAAT 0.886642 -62 AAACATTGCGAAAAATGATCCAAAAGAGAGAATAAAA 7 49 1 AAAAAGAAAA 0.956205 -552 GAGAGAATAAAAAAACAATTAGAAAATGATTTACTCA 7 74 1 AAAAAAAAAT 0.890139 -527 AAGGTGATTGAAAATTATAATGAATTTTGCAGGTATC 7 203 0 AAAATATAAT 0.823513 -398 AAAGATATCCAAAAACAACTGGAAGCTTTCCAGTCGC 7 299 1 AAAAAAAAAT 0.890139 -302 CCTAGAAATAAAAATCGTCAATAATGAATATTAAAAA 7 390 0 AAAATGTAAA 0.926649 -211 ATGTAGAATCGAAAAAATTCTCAAGTAGAAAGAGGAT 7 569 0 GAAAAATAAA 0.861976 -32 CCAGGTACCGAAAAAGGTGAAGAAAAAAGGACTTGGA 8 375 0 AAAAAGTAAA 0.965738 -226 GAAGGATCTGAAAAACGTATGCAAATATAGCAAGAGG 8 432 1 AAAAAGTAAA 0.965738 -169 TATTTATGGAAAAAAAATCTTAAAATAATTAAAACGC 8 494 0 AAAAAATAAA 0.931052 -107 GAGTGAGCGCAAAAAAATAAAGAACTAAGGAAGAAGA 8 563 1 AAAAAATAAA 0.931052 -38 ***** ** ** * Masking position 13 Map Score: 23.7122 Number of sites scoring better than the average of aligned sites = 3499 Number in coding regions = 1630 Number in noncoding regions = 1869 Number of orfs with sites within 600 bp upstream = 1251 Fraction of orfs with sites within 600 bp upstream = 0.200932 Motif number 2 AAAATAAACTAAAAAAGCACTATGAGATGAA 1 138 0 AAAAAAGCAT 0.859237 -463 ATAAGCAAGAAACACAACAGTATAAAGGGAC 1 210 1 AACACAACAT 0.935664 -391 GAATTGTTCGAACAAAACCCTAGGTCTTGGC 1 395 0 AACAAAACCT 0.885991 -206 GCGGATAGTAAAAACAACACTAGTTTGTCTG 1 493 1 AAAACAACAT 0.9466 -108 AAGAAGAGTTAACAAAATACATATCTCCAAC 2 205 1 AACAAAATAA 0.810666 -105 TATCGTCCCAAAAAAAATCCTCGACAGC 2 292 1 AAAAAAATCT 0.854875 -18 TGCTAGAATGAAAAAAATAATGGAGTCCTTC 3 261 0 AAAAAAATAT 0.945437 -340 GCTGTCTTCGAAAAAAAAAATAAGGTGTTAA 3 519 0 AAAAAAAAAT 0.82808 -82 ATTCCTCGAGAAAACAATAATGTTTATTTAT 4 63 1 AAAACAATAT 0.916832 -538 AAATTATATAAAAACAAAAGTACAGAAGCAT 4 198 1 AAAACAAAAT 0.75396 -403 ATGTTGGTCAAACACAATACTAGGTCGAATG 4 380 1 AACACAATAT 0.900441 -221 AGGAAGAAACAACAAAATAGTAGGAATAACT 5 214 1 AACAAAATAT 0.93428 -87 AAGAGAGAATAAAAAAACAATTAGAAAATGA 7 72 1 AAAAAAACAT 0.965353 -529 TACGCGCAATAAAAAAACACACCACAATGAA 7 169 0 AAAAAAACAA 0.893526 -432 TAGAAGTTCGAACAAAACAGAGGTCGCGACT 7 330 0 AACAAAACAA 0.873177 -271 AATGAATATTAAAAAAGCAATTGAATGGTCT 7 374 0 AAAAAAGCAT 0.859237 -227 TATTTATGGAAAAAAAATCTTAAAATAATTA 8 500 0 AAAAAAATCT 0.854875 -101 GAGTGAGCGCAAAAAAATAAAGAACTAAGGA 8 563 1 AAAAAAATAA 0.839198 -38 ********* * Masking position 6 Map Score: 12.8447 Number of sites scoring better than the average of aligned sites = 1890 Number in coding regions = 885 Number in noncoding regions = 1005 Number of orfs with sites within 600 bp upstream = 726 Fraction of orfs with sites within 600 bp upstream = 0.116608 Motif number 3 GTGCGGAATGTAGGTTGATGGACATGGTACAG 1 69 1 TAGTTGATGA 0.902255 -532 AGAGCACCACGATGGTGATCGAAATCTCTAGG 1 291 0 GAGGTGATGA 0.997241 -310 ATTCTCTACTGAAGGAGATAGACAATGAAATG 4 252 1 GAGGAGATGA 0.984794 -349 AGACATCTTAGAAGGTGATCGACCTCTACTAT 4 420 0 GAGGTGATGA 0.997241 -181 TAAGCTTATGGATGTTGATGAACCGAATCCTA 6 31 0 GAGTTGATAA 0.902255 -270 ATAATTGATGGAAGGTGATTGAAAATTATAAT 7 219 0 GAGGTGATGA 0.997241 -382 AAGAGGCAACGATGGTGATCGATTATTTCCAG 8 36 1 GAGGTGATGA 0.997241 -565 CTTTGCATTGGAGGGTAATAGAAGCAAGGATT 8 142 0 GAGGTAATGA 0.975821 -459 ** ****** ** Masking position 8 Map Score: 12.151 Number of sites scoring better than the average of aligned sites = 67 Number in coding regions = 57 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 4 ATAACCAGAAAAAAGTGAAAAATAAACTAA 1 157 0 AAAAGTGAAA 0.868206 -444 GAACAATTCTAAAAAGGTAAATAAAAACAA 1 417 1 AAAAAGGTAA 0.937838 -184 CGTCTTGTTCAAGAAGGTAGGCGAGGACAT 2 129 0 AAGAAGGTAG 0.758702 -181 TAATTTCTCTAAAAGGGAGAAAGTTGGTGA 3 140 1 AAAAGGGAGA 0.871229 -461 TGTTGTAAAAAAAAAGGTAGTGAACGTATA 3 559 0 AAAAAGGTAG 0.778816 -42 TCATAGGATGAAGAATGAAATTGTTGTAAA 3 580 0 AAGAATGAAA 0.895305 -21 CCCGATTTGGAAAAAGGTAAACAACAATGA 4 30 1 AAAAAGGTAA 0.937838 -571 GAACGCGTTCAAGAATGAAAGTCATTAATT 5 134 0 AAGAATGAAA 0.895305 -167 TCTGTTCGATAAAAAAGAAAGGTATCCAAA 5 162 1 AAAAAAGAAA 0.856519 -139 ATTAAATTCAAGAAGTGAAAGAATAAAAGA 6 103 0 AGAAGTGAAA 0.605904 -198 CAAACCCAAGAAAAGGGAAAAAGAGTAGAA 6 233 1 AAAAGGGAAA 0.948984 -68 CTCTCCTCCGAAAAAGGTAAACATTGCGAA 7 31 1 AAAAAGGTAA 0.937838 -570 AAAATGATCCAAAAGAGAGAATAAAAAAAC 7 60 1 AAAAGAGAGA 0.598964 -541 CAATTGGTTTAGGAAGGAAAATAATAAAGA 7 274 1 AGGAAGGAAA 0.849301 -327 ATCTTATCAAAAGAATGAAAAGTATACCGG 7 433 0 AAGAATGAAA 0.895305 -168 GCTTCGATTCAAGAAAGAAACTCCTAGAGT 7 520 0 AAGAAAGAAA 0.842038 -81 CCAGGTACCGAAAAAGGTGAAGAAAAAAGG 8 382 0 AAAAAGGTGA 0.845854 -219 ********** Masking position 4 Map Score: 11.2551 Number of sites scoring better than the average of aligned sites = 5116 Number in coding regions = 2466 Number in noncoding regions = 2650 Number of orfs with sites within 600 bp upstream = 1757 Fraction of orfs with sites within 600 bp upstream = 0.282204 Motif number 5 GAATTGACAAAAAAGAACCCTAAGCTATAA 1 337 1 AAAAGAACCC 0.955109 -264 GAATTGTTCGAACAAAACCCTAGGTCTTGG 1 396 0 AACAAAACCC 0.921022 -205 AAACAATGGTAAACAAAGGCTTTGATCTTC 1 441 1 AAACAAAGGC 0.804059 -160 ACCTATTTGTAACCGCACGCTTCGCTATCC 2 159 1 AACCGCACGC 0.889667 -151 TATCGTCCCAAAAAAAATCCTCGACAGC 2 292 1 AAAAAAATCC 0.838192 -18 AGCCAGGAATAAACAAACCCAGTAAACAAA 3 31 0 AAACAAACCC 0.966442 -570 GTCAACTAGAAAACGAATGCGAACATCTAG 3 59 0 AAACGAATGC 0.954264 -542 TTTTTTATCGAACAGAACGCGTTCAAGAAT 5 148 0 AACAGAACGC 0.949148 -153 AAAGGTATCCAAACAAACGCCATTTATGAA 5 179 1 AAACAAACGC 0.961231 -122 GATGTTGATGAACCGAATCCTATTGTGATA 6 23 0 AACCGAATCC 0.961083 -278 AATGGCATCAAAACAAACCCAAGAAAAGGG 6 220 1 AAACAAACCC 0.966442 -81 TAGTCAGGGTAACAGAATCCTTGCTTCTAT 8 127 1 AACAGAATCC 0.907523 -474 AGGATCTGAAAAACGTATGCAAATATAGCA 8 434 1 AAACGTATGC 0.707318 -167 ********** Masking position 7 Map Score: 9.90979 Number of sites scoring better than the average of aligned sites = 579 Number in coding regions = 427 Number in noncoding regions = 152 Number of orfs with sites within 600 bp upstream = 140 Fraction of orfs with sites within 600 bp upstream = 0.0224863 Motif number 6 GGCAGCGTATAGTATAACCAGAAAAAAGTGAAAAA 1 165 0 AGACCAAAAA 0.902813 -436 CGAAATCTCTAGGAGTAGCATACCACAGCGATATT 1 269 0 AGAGCAACCA 0.964247 -332 AAAAGAGTATATTTACACCTCACCA 1 586 1 ATACCTACCA 0.852486 -15 ACGGTGACGAAGGATCACCATACAACAACTACTAA 3 349 1 AGACCAACAA 0.989557 -252 CTTTTTGCTTAGGCATACCAAACCATCCACTCATT 3 485 1 AGACCAACCA 0.994654 -116 AATCAAAGAAATATACACCAAACCAACGAAGTTTA 4 131 0 ATACCAACCA 0.973446 -470 ATGGTTCCGAAGATACACCACACAACTGGAAGCTT 4 312 1 AGACCAACAA 0.989557 -289 AAATAATACGAGGATTACTACACCAATTTGGCAGC 6 267 0 AGACTAACCA 0.947616 -34 AGTTAACAAAAGAAAGACCATTCAATTGCTTTTTT 7 360 1 AGACCATCAA 0.937255 -241 ** **** **** Masking position 7 Map Score: 3.70181 Number of sites scoring better than the average of aligned sites = 412 Number in coding regions = 363 Number in noncoding regions = 49 Number of orfs with sites within 600 bp upstream = 48 Fraction of orfs with sites within 600 bp upstream = 0.0077096 Motif number 7 TCTATGCGTATGACAAAGAGCACCACGATGGTGA 1 305 0 TGACAAGACC 0.990605 -296 CGCATAGAATTGACAAAAAAGAACCCTAAGCTAT 1 331 1 TGACAAAAAC 0.78264 -270 TCTTCCTCATTGAAGATCAAAGCCTTTGTTTACC 1 448 0 TGAAATCACC 0.840082 -153 CCTACCTTCTTGAACAAGACGACCTATTTGTAAC 2 138 1 TGAAAAGACC 0.947988 -172 TGCCCTATAATGACAATATCGTCCCAAAAAAAAT 2 276 1 TGACATATCC 0.939487 -34 GTTTTCTAGTTGACCATATTTACCAAATATTCAC 3 75 1 TGACATATCC 0.950504 -526 GTATTGTGTTTGACCAACATTTCCATGGTATCAT 4 366 0 TGACAACACC 0.978017 -235 AGAATTGGCATGACCAAGTGCCCCGTTGGCAACA 4 550 0 TGACAAGTCC 0.986304 -51 TTGTATTACCCGACCAAGAGAACCACGTAGAACG 8 82 0 CGACAAGACC 0.956499 -519 TCTGTTACCCTGACTATGTTACCCTGATTGTATT 8 109 0 TGACATGTCC 0.980075 -492 **** **** ** Masking position 6 Map Score: 3.89463 Number of sites scoring better than the average of aligned sites = 416 Number in coding regions = 358 Number in noncoding regions = 58 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 8 TCTCTAAAAGGGAGAAAGTTGGTGATTTTT 3 145 1 GGAGAAAGTT 0.987869 -456 GGTAGTGAACGTATAAAGTTGGATGCTGTC 3 544 0 GTATAAAGTT 0.912527 -57 ACGTATGCACGGATAAAGTTTTCAGTCTGA 5 251 0 GGATAAAGTT 0.985387 -50 CATAATAGTAGGATAAAATTCGTTCAGCTC 6 178 0 GGATAAAATT 0.897403 -123 AATAAGAGTAGGATTAAGTTCATTGTGGTG 7 151 1 GGATTAAGTT 0.933332 -450 CCTAGAGTTAAGAGAAAGTTATAGTCTAAA 7 498 0 AGAGAAAGTT 0.913514 -103 ACGCATCTTGGAAGAAAGTTGCGAGCATTG 8 298 1 GAAGAAAGTT 0.926459 -303 ********** Masking position 6 Map Score: 2.15521 Number of sites scoring better than the average of aligned sites = 251 Number in coding regions = 205 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 9 ACTGTTGTGTTTCTTGCTTATTGCTTCAGT 1 201 0 TTCTTGCTTA 0.962907 -400 ACCTTAACTATTCTTGCATATATAATAATG 3 182 0 TTCTTGCATA 0.982856 -419 ATTTTTTTCATTCTAGCATACTATTATTCC 3 274 1 TTCTAGCATA 0.889709 -327 TTTCTAAAGCTTTTTGCTTAGGCATACCAA 3 476 1 TTTTTGCTTA 0.942125 -125 TAAAAAATTCTTCTTGCACAGACTGAATCA 4 161 0 TTCTTGCACA 0.922816 -440 TTTTTTCATAAGGGAAGCCT 7 1 1 TTTTTTCATA 0.80058 -600 CTTCCAGTTGTTTTTGGATATCTTTATTAT 7 294 0 TTTTTGGATA 0.82317 -307 CCTCTTGCTATATTTGCATACGTTTTTCAG 8 439 0 TATTTGCATA 0.834941 -162 TTTAAGATTTTTTTTCCATAAATAGTGCTG 8 507 1 TTTTTCCATA 0.916319 -94 AGGGAAGCTCTTCTTCCTTAGTTCTTTATT 8 578 0 TTCTTCCTTA 0.887728 -23 ********** Masking position 4 Map Score: 2.61795 Number of sites scoring better than the average of aligned sites = 1109 Number in coding regions = 776 Number in noncoding regions = 333 Number of orfs with sites within 600 bp upstream = 243 Fraction of orfs with sites within 600 bp upstream = 0.0390299 Motif number 10 TCTGGTTGCTAAAAGAGTATATTTACACCT 1 576 1 AAAAGAGTAT 0.931174 -25 GTTACAAGGAATAATAGTATGCTAGAATGA 3 281 0 ATAATAGTAT 0.887434 -320 AATGCTACAGAAAATAGTAGAGGTCGATCA 4 407 1 AAAATAGTAG 0.976219 -194 AAGAAACAACAAAATAGTAGGAATAACTAC 5 217 1 AAAATAGTAG 0.976219 -84 TCAAGAATGCATAATAGTAGGATAAAATTC 6 187 0 ATAATAGTAG 0.968881 -114 AGAAAAGGGAAAAAGAGTAGAAGCTGGCTG 6 241 1 AAAAGAGTAG 0.98024 -60 CCTGACGCTAATAAGAGTAGGATTAAGTTC 7 142 1 ATAAGAGTAG 0.974406 -459 ********** Masking position 6 Map Score: 5.85985 Number of sites scoring better than the average of aligned sites = 265 Number in coding regions = 155 Number in noncoding regions = 110 Number of orfs with sites within 600 bp upstream = 92 Fraction of orfs with sites within 600 bp upstream = 0.0147767 Motif number 11 ACCTAGGGTTTTGTTCGAACAATTCTAAAA 1 401 1 TTGTTCGAAC 0.979108 -200 CCTTATTTTTTTTTTCGAAGACAGCATCCA 3 525 1 TTTTTCGAAG 0.967263 -76 ACCTTTCTTTTTTATCGAACAGAACGCGTT 5 155 0 TTTATCGAAC 0.968048 -146 AATGTTTACCTTTTTCGGAGGAGAGAGGCT 7 26 0 TTTTTCGGAG 0.91528 -575 GACCTCTGTTTTGTTCGAACTTCTAGTTAA 7 336 1 TTGTTCGAAC 0.979108 -265 CTACGTCTCATTTATCGAACACTGATGAAA 8 216 0 TTTATCGAAC 0.968048 -385 ********** Masking position 5 Map Score: 2.00266 Number of sites scoring better than the average of aligned sites = 132 Number in coding regions = 81 Number in noncoding regions = 51 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 12 TAGTAGGCGGTTTATTATCTTTGTCCCTTT 1 233 0 TTTATTATCT 0.946792 -368 AAGTTGGTGATTTTTTATCTCGCATTATTA 3 160 1 TTTTTTATCT 0.714596 -441 AATCCTATCTTTTATTCTTTCACTTCTTGA 6 96 1 TTTATTCTTT 0.954844 -205 GCAGATGCGCTTTACTCTTTGAAGATATCT 6 140 1 TTTACTCTTT 0.81515 -161 TAATTGTTTTTTTATTCTCTCTTTTGGATC 7 65 0 TTTATTCTCT 0.958175 -536 TTTGGATATCTTTATTATTTTCCTTCCTAA 7 282 0 TTTATTATTT 0.942609 -319 CGGTATACTTTTCATTCTTTTGATAAGATA 7 434 1 TTCATTCTTT 0.831663 -167 TGTAATTGGATTTATTATCTTATCAAAAGA 7 449 0 TTTATTATCT 0.946792 -152 CAATGGCGTTTTAATTATTTTAAGATTTTT 8 489 1 TTAATTATTT 0.721382 -112 TCCTTAGTTCTTTATTTTTTTGCGCTCACT 8 564 0 TTTATTTTTT 0.802056 -37 ********** Masking position 6 Map Score: 1.98262 Number of sites scoring better than the average of aligned sites = 886 Number in coding regions = 451 Number in noncoding regions = 435 Number of orfs with sites within 600 bp upstream = 312 Fraction of orfs with sites within 600 bp upstream = 0.0501124 Motif number 13 GATAATAAACCGCCTACTACTAAATAATAT 1 244 1 CGCCTACTAC 0.896966 -357 TGTCTGTACTCGCATTCTACTGCTGCTACC 1 518 1 CGCATTCTAC 0.926638 -83 CATCACAGACGTCCTTCTACAACAATTCAT 2 235 1 GTCCTTCTAC 0.977216 -75 AAATAATGGAGTCCTTCTACGTGTCAATGT 3 248 0 GTCCTTCTAC 0.977216 -353 TTGTATGGTGATCCTTCGTCACCGTTAAGA 3 344 0 ATCCTTCGTC 0.921894 -257 TATTTTCTGTAGCATTCGACCTAGTATTGT 4 393 0 AGCATTCGAC 0.868866 -208 CTATGATACAGGCCTTCGTCGTAGCTTTCC 5 53 1 GGCCTTCGTC 0.95983 -248 ACCCAATATCCTCTTTCTACTTGAGAATTT 7 562 1 CTCTTTCTAC 0.847649 -39 CGTTTTTCAGATCCTTCTTCTATTCCTGGC 8 419 0 ATCCTTCTTC 0.934681 -182 ********** Masking position 5 Map Score: 1.46134 Number of sites scoring better than the average of aligned sites = 692 Number in coding regions = 582 Number in noncoding regions = 110 Number of orfs with sites within 600 bp upstream = 112 Fraction of orfs with sites within 600 bp upstream = 0.0179891 Motif number 14 ATATTCTACACAGATATATACATATTTGTTTT 2 17 0 CAAATATACA 0.942583 -293 ATTTCGCAAAAATACATAAACAATCAACCCTC 2 59 1 AAAATAAACA 0.975526 -251 AACATCTAGCCAGGAATAAACAAACCCAGTAA 3 36 0 CAGATAAACA 0.887976 -565 CCGATTTGGAAAAAGGTAAACAACAATGAAAT 4 31 1 AAAGTAAACA 0.932498 -570 GTTTCCTTTGCATAAATAAACATTATTGTTTT 4 73 0 CAAATAAACA 0.978802 -528 GACTGAATCAAAGAAATATACACCAAACCAAC 4 139 0 AAAATATACA 0.934087 -462 TTATTAGATACAGAGATATACATATTATAGAG 5 101 0 CAAATATACA 0.942583 -200 ATGATACAATCAAAGATAAACACCACGACGTA 5 276 0 CAAATAAACA 0.978802 -25 TCTCCTCCGAAAAAGGTAAACATTGCGAAAAA 7 32 1 AAAGTAAACA 0.932498 -569 CAAAAGAGAGAATAAAAAAACAATTAGAAAAT 7 69 1 AAAAAAAACA 0.899304 -532 GCTTACGCGCAATAAAAAAACACACCACAATG 7 171 0 AAAAAAAACA 0.899304 -430 AGTGAGCGCAAAAAAATAAAGAACTAAGGAAG 8 564 1 AAAATAAAGA 0.809122 -37 ** * ******* Masking position 8 Map Score: 9.05082 Number of sites scoring better than the average of aligned sites = 479 Number in coding regions = 186 Number in noncoding regions = 293 Number of orfs with sites within 600 bp upstream = 198 Fraction of orfs with sites within 600 bp upstream = 0.0318021 Motif number 15 TATACGCTGCCTACTGAAGCAATAAGCAAG 1 189 1 CTACTGAAGC 0.945771 -412 TACTCGCATTCTACTGCTGCTACCTGCTAC 1 524 1 CTACTGCTGC 0.922661 -77 AAAAACAAAAGTACAGAAGCATGCACGACG 4 207 1 GTACAGAAGC 0.827042 -394 CATCGCCTATTTCCTGCAGCGGAAGCTTCC 4 339 0 TTCCTGCAGC 0.954903 -262 CTTGAAGAGTCTCCAGCCGCTGTGCATCAG 4 503 1 CTCCAGCCGC 0.979331 -98 TTTTAATCCGTTCCTGATGCACAGCGGCTG 4 516 0 TTCCTGATGC 0.937797 -85 ATAAGCTTATCTGCTGACGCTACCACTAAA 6 54 1 CTGCTGACGC 0.95481 -247 AAACCGGATAGTCCTGACGCTAATAAGAGT 7 130 1 GTCCTGACGC 0.97966 -471 ACTGGAAGCTTTCCAGTCGCGACCTCTGTT 7 316 1 TTCCAGTCGC 0.852378 -285 ********** Masking position 2 Map Score: 1.0559 Number of sites scoring better than the average of aligned sites = 546 Number in coding regions = 449 Number in noncoding regions = 97 Number of orfs with sites within 600 bp upstream = 89 Fraction of orfs with sites within 600 bp upstream = 0.0142949