AlignACE version 2.2 July 7, 1998 AlignACE -jDBP.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YDL031W 300 bp YDL031W DBP10 1-2988 DEAD box protein 10 #2 YGL078C 365 bp YGL078C DBP3 1-1572 ATP-dependent RNA helicase CA3 of the DEAD\/DEAH box family #3 YHR169W 303 bp YHR169W DBP8 1-1296 DEAD-box protein #4 YKR024C 397 bp YKR024C DBP7 1-2229 putative RNA helicase #5 YLR276C 325 bp YLR276C DBP9 1-1785 DEAD-Box Protein 9 #6 YNL112W 439 bp YNL112W DBP2 1-1273, 2276-2643 ATP-dependent RNA helicase of DEAD box family #7 YNR038W 300 bp YNR038W DBP6 1-1890 putative RNA helicase #8 YOR046C 439 bp YOR046C DBP5 1-1449 RNA helicase #9 YPL119C 363 bp YPL119C DBP1 1-1854 putative ATP-dependent RNA helicase\; Dead box protein Motif number 1 AAATTTTCAAGCGATGAGATGAAATTCATA 1 164 1 GCGATGAGAT 0.996867 -137 TGCTTCTTATGCGATGAGGTGAAAAATTTT 2 221 0 GCGATGAGGT 0.994481 -145 TTTACAATCCGCGATGAGGTAAAAATTTTT 3 165 0 GCGATGAGGT 0.994481 -139 ATAAAAGCGAGAGATGAGCTTAAATGATCT 4 56 0 GAGATGAGCT 0.995379 -342 TGAAAAATTTGCGATGAGCTTAGGAAAATA 4 257 1 GCGATGAGCT 0.997108 -141 ATGAAACCTAGAGATGAAATTTTAAAAATT 5 113 1 GAGATGAAAT 0.939994 -213 GAGATGAGATGAGATGAGATGGTCTAGAAG 5 169 0 GAGATGAGAT 0.994995 -157 GAAATGAGATGAGATGAGATGAGATGAGAT 5 179 0 GAGATGAGAT 0.994995 -147 GAATCGAAATGAAATGAGATGAGATGAGAT 5 189 0 GAAATGAGAT 0.934491 -137 AAAATTTTCTGCGATGAGCATCGGCGTAAA 6 283 0 GCGATGAGCA 0.975569 -157 AGCATAACTGGCGATGAGATGTGCTCGAAA 7 246 1 GCGATGAGAT 0.996867 -55 CATTACTTCAGAGATGACCTTAAGTAACCT 9 237 0 GAGATGACCT 0.961765 -127 ********** Masking position 4 Map Score: 29.5523 Number of sites scoring better than the average of aligned sites = 359 Number in coding regions = 106 Number in noncoding regions = 253 Number of orfs with sites within 600 bp upstream = 282 Fraction of orfs with sites within 600 bp upstream = 0.0452939 Motif number 2 CTTTATTGTAAAAGAATGAAAGTTTGGAAAC 1 67 0 AAAAATGAAA 0.808424 -234 TCAACTATTGAAAGAAAAAAATAAGAGACCA 1 110 1 AAAAAAAAAA 0.978471 -191 AATATACTTAAAATAAATAACGGTCGACTGA 2 25 0 AAAAAATAAC 0.731416 -341 ATTTGCATAGAAGTAATAAAAGTGAATTTTT 2 56 1 AAGAATAAAA 0.810087 -310 CATAAGAAGCAAATAAAAAAAAAATATTAAT 2 240 1 AAAAAAAAAA 0.978471 -126 ATGTGTTAAAGAAAAAGATGTTTAAGTG 3 8 1 AAAAAAAAGA 0.928155 -296 GAATGGGATAAAAGAAAAAAAACATCCGAAG 3 79 0 AAAAAAAAAA 0.978471 -225 CCGTGAGAAGAGGAAAAAAAAATTTTTACCT 3 148 1 AGGAAAAAAA 0.90309 -156 ATTATTCAAGAAAAAAAGAAATGTTACAATG 4 100 0 AAAAAAGAAA 0.958921 -298 CGATGAGCTTAGGAAAATAAAAGATTGAGTA 4 268 1 AGGAAATAAA 0.751095 -130 AATAATCCCAAAGGAAAAAGAATATAAACAA 4 334 0 AAGAAAAAGA 0.870253 -64 TGATTAAGGTAAACAATAAAAGGCAGTTCTA 5 71 0 AAAAATAAAA 0.891492 -255 TTATCTCACAAAAGAAATAGACTAAGCCAAA 5 283 1 AAAAAATAGA 0.807075 -43 AAAAAAAAAGAAATAAAAAAAGAAATAAATT 6 238 0 AAAAAAAAAA 0.978471 -202 AAAAAAAAAAAAAAAAAAAAAGAAATAAAAA 6 250 0 AAAAAAAAAA 0.978471 -190 CGGCGTAAAAAAAAAAAAAAAAAAAAAAAAA 6 261 0 AAAAAAAAAA 0.978471 -179 TCTTTTTATAAGACAAATAAACTGAAGGAAA 6 311 0 AGAAAATAAA 0.853204 -129 AAAATTGCCCAAAAAAAAAACCCAAAAAAAT 8 178 1 AAAAAAAAAC 0.893728 -262 ATTTTTTCTAAAATAAAGAAAAAGAAAAAGA 9 19 1 AAAAAAGAAA 0.958921 -345 ATAAAGAAAAAGAAAAAGAAAAATGATCGAA 9 31 1 AGAAAAGAAA 0.902143 -333 TGCCGTGATGAAGAAAAAAAATCATACAGAC 9 89 0 AAGAAAAAAA 0.959343 -275 *** ******* Masking position 6 Map Score: 29.2599 Number of sites scoring better than the average of aligned sites = 11116 Number in coding regions = 1680 Number in noncoding regions = 9436 Number of orfs with sites within 600 bp upstream = 2301 Fraction of orfs with sites within 600 bp upstream = 0.369579 Motif number 3 TCTCATCGCTTGAAAATTTTAAGAGCGCCG 1 153 0 TGAAAATTTT 0.898967 -148 TCAAATTTCTTGAAATATTTTTGCGGGAAA 2 184 1 TGAAATATTT 0.892194 -182 GGGAAAAAGATGAAAAATTTTTCACCTCAT 2 208 1 TGAAAAATTT 0.98906 -158 CCGCGATGAGGTAAAAATTTTTTTTTCCTC 3 157 0 GTAAAAATTT 0.900233 -147 CTTGAAAAGTTTCTGATATGAT 3 292 0 TGAAAAGTTT 0.929516 -12 CTTTTTTTCTTGAATAATTTTGTCAGAATA 4 113 1 TGAATAATTT 0.940083 -285 CCATTTTACTTGAAAAATTTGCGATGAGCT 4 247 1 TGAAAAATTT 0.98906 -151 AGATGAAATTTTAAAAATTTTTTTTCACGA 5 124 1 TTAAAAATTT 0.95524 -202 ATTGAATGATTGAAAAATTTATTTCTTTTT 6 223 1 TGAAAAATTT 0.98906 -217 ATAAACTGAAGGAAAAATTTTCTGCGATGA 6 296 0 GGAAAAATTT 0.974505 -144 GCTTAAAATTTGAAAAATTATTGCAGATTT 7 203 1 TGAAAAATTA 0.892194 -98 TTGCGTTGTTGTAAAAATTTA 8 2 0 GTAAAAATTT 0.900233 -438 AGTAATACCTTTAATAATTTTAATATATTT 8 133 1 TTAATAATTT 0.78741 -307 TTTGCTTGATTGAAAAATTTGCATACGGGT 8 311 0 TGAAAAATTT 0.98906 -129 AGCAAAGCATTGCAAAATTTGCATTACCTT 8 335 1 TGCAAAATTT 0.924619 -105 ********** Masking position 4 Map Score: 22.3693 Number of sites scoring better than the average of aligned sites = 615 Number in coding regions = 307 Number in noncoding regions = 308 Number of orfs with sites within 600 bp upstream = 332 Fraction of orfs with sites within 600 bp upstream = 0.0533248 Motif number 4 AACTGTTAATACTTATGCTTTCGTTAAAAGG 2 326 0 ACTTATCTTT 0.962765 -40 GGTCTAGAAGAGTTATTCTTTATGTTCGTGA 5 148 0 AGTTATCTTT 0.986502 -178 CGCTCAAATAACTTATACTTTTCTGTATCTC 6 350 1 ACTTATCTTT 0.962765 -90 TCTCATCGCCAGTTATGCTTTCTATATAATA 7 234 0 AGTTATCTTT 0.986502 -67 TTTAAGATTAAGTAATACCTTTAATAATTTT 8 123 1 AGTAATCCTT 0.962683 -317 ACAACAGCAGAGTTATTCTTTAAATACGATA 8 240 0 AGTTATCTTT 0.986502 -200 TCATCTCTGAAGTAATGCCTTTATTTTATAA 9 250 1 AGTAATCCTT 0.962683 -114 TTTTTCTTGTAATACTTTCACTCAAAGG 9 346 0 TGTAATCTTT 0.890877 -18 ****** **** Masking position 5 Map Score: 7.26117 Number of sites scoring better than the average of aligned sites = 197 Number in coding regions = 123 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 56 Fraction of orfs with sites within 600 bp upstream = 0.00899454 Motif number 5 CATTCTTTTACAATAAAGCAATGTTTTGCCTCAA 1 80 1 CATAAAGAGT 0.923066 -221 TAGTAACTCTCTGTAAAGCCATTTTGTATGAATT 1 186 0 CTTAAAGATT 0.904961 -115 GAAGTAAAGTCACTAAAAGTACTTTTGTCATTTA 1 245 1 CATAAAAATT 0.960547 -56 CTTAACAAACCATTAAAAAAAATTCACTTTTATT 2 70 0 CATAAAAATT 0.960553 -296 GCTTTGCGCTCTTGAAAGCGATGTGACTGTAATT 2 151 1 CTGAAAGAGT 0.749743 -215 CGTTAAAAGGCTGTAAAATGAAGTTAAGCTATAT 2 302 0 CTTAAAAAGT 0.968437 -64 GATAATATTCCTATACAATTATTTATTCAAAAAC 3 223 0 CTTACAAATT 0.85876 -81 TTAAGGTAAACAATAAAAGGCAGTTCTAACCAGA 5 65 0 CATAAAACGT 0.795547 -261 GGCTCTTACTCAATGAAAGAAATTAGAAGAATCG 5 213 0 CATGAAAATT 0.755385 -113 AGGTTGTTGACAAGAAAATAATTTGAATGAGATA 6 375 0 CAGAAAAATT 0.858761 -65 CACTTAACGACATTAATATTAATTACAAAAGTGT 8 56 1 CATAATAATT 0.819613 -384 TCGTCGAAATCTATAATAGTACGTGTATCAAACA 8 87 0 CTTAATAAGT 0.85202 -353 TTTCGACGACCTTTAAGATTAAGTAATACCTTTA 8 112 1 CTTAAGAAGT 0.899052 -328 TTTGCATTACCTTTAAAACCAGTTGACCTTTATA 8 352 1 CTTAAAAATT 0.960553 -88 CCAAGAACATCTATAAAAATACTTACCACCTTAG 8 410 1 CTTAAAAATT 0.960553 -30 GTTAAAGGAGCAATACGAATAGGTGCCGTGATGA 9 109 0 CATACGAAGT 0.689809 -255 ** ***** * ** Masking position 14 Map Score: 6.75817 Number of sites scoring better than the average of aligned sites = 578 Number in coding regions = 356 Number in noncoding regions = 222 Number of orfs with sites within 600 bp upstream = 170 Fraction of orfs with sites within 600 bp upstream = 0.0273049 Motif number 6 TTTTAATGGTTTGTTAAGCCATTTTAGACGAGGGACTAAGA 2 86 1 TTCCTTTTAA 0.950216 -280 CTTAACTTCATTTTACAGCCTTTTAACGAAAGCATAAGTAT 2 308 1 TTCCTTTAAA 0.943757 -58 ATTTCTTTTTTTCTTGAATAATTTTGTCAGAATACTAACCC 4 109 1 TTTATTTTGA 0.864033 -289 ACATTCAATTTTAAACTGAAATTTTATAAAAACTCTGTTCA 4 164 0 TTAATTTTAA 0.8145 -234 CCCTGACATATTAGGTTTCCATTTTACTTGAAAAATTTGCG 4 229 1 TTCCTTTTAA 0.950215 -169 ATAAGCATACTTATTCAGCAATTTAACACCAAG 4 375 1 TTCATTTAAA 0.953332 -23 TTTTTTGATCTTTCGTTGCAGTTTTGGCTTAGTCTATTTCT 5 295 0 TTCATTTTGA 0.933496 -31 TAGCTGCCGGTTGCATTTTATTTTTGGTGGACACTACTTCT 7 28 1 TTTATTTTGA 0.864056 -273 CTATTATAGATTTCGACGACCTTTAAGATTAAGTAATACCT 8 102 1 TTACTTTAAA 0.825705 -338 CCTTTAATAATTTTAATATATTTTAAGCCTACTGCTCTAAA 8 140 1 TTTATTTAAA 0.902411 -300 TTGGGTTTTTTTTTTGGGCAATTTTAGAGCAGTAGGCTTAA 8 162 0 TTCATTTTAA 0.958744 -278 CATTGCAAAATTTGCATTACCTTTAAAACCAGTTGACCTTT 8 342 1 TTACTTTAAA 0.825704 -98 TTTCTTTTTCTTTTTCTTTATTTTAGAAAAAATTGAACGAA 9 11 0 TTTATTTAGA 0.847117 -353 ACCCCGCGAGTTCTTTAACAATTTTAAGGGAAGGTTACTTA 9 206 1 TTCATTTTAA 0.956181 -158 GTAGTGTCAGTTAAAGGATATTTTAAGAAAAACCCCTTTGA 9 312 1 TTTATTTAAA 0.902347 -52 ** ** ***** * Masking position 21 Map Score: 7.96066 Number of sites scoring better than the average of aligned sites = 617 Number in coding regions = 390 Number in noncoding regions = 227 Number of orfs with sites within 600 bp upstream = 182 Fraction of orfs with sites within 600 bp upstream = 0.0292323 Motif number 7 CTACCCGGCGCTCTTAAAATTTTCAAGCGAT 1 148 1 CCTTAAAATT 0.939624 -153 GCAAATAATATACTTAAAATAAATAACGGTC 2 31 0 TCTTAAAATA 0.958937 -335 TAATTCAAATTTCTTGAAATATTTTTGCGGG 2 180 1 TCTTGAAATA 0.915765 -186 CAATCGTACTTTCTTAAATTAGAAATATCAC 4 306 0 TCTTAAATTA 0.867576 -92 TGAAAAAAAATTTTTAAAATTTCATCTCTAG 5 120 0 TTTTAAAATT 0.73497 -206 TGCCGGGTGATGCTTAAAATTTGAAAAATTA 7 192 1 TCTTAAAATT 0.969523 -109 TAGAGCAGTAGGCTTAAAATATATTAAAATT 8 148 0 GCTTAAAATA 0.925238 -292 AGCAGAGTTATTCTTTAAATACGATATATAT 8 235 0 TCTTTAAATA 0.876658 -205 AAGTAACCTTCCCTTAAAATTGTTAAAGAAC 9 215 0 CCTTAAAATT 0.939624 -149 AAAGGGGTTTTTCTTAAAATATCCTTTAACT 9 320 0 TCTTAAAATA 0.978369 -44 * ********* Masking position 5 Map Score: 4.72722 Number of sites scoring better than the average of aligned sites = 281 Number in coding regions = 163 Number in noncoding regions = 118 Number of orfs with sites within 600 bp upstream = 100 Fraction of orfs with sites within 600 bp upstream = 0.0160617 Motif number 8 GTAGTAACAATTGGTCTCTTATTTTTTTCTTTCAAT 1 116 0 TTTTATTTTT 0.898982 -185 GCGATGTGACTGTAATTCAAATTTCTTGAAATATTT 2 168 1 TGATATTTCT 0.853813 -198 ACTGATAATATTCCTATACAATTATTTATTCAAAAA 3 224 0 TTTTATTATT 0.806881 -80 TCTTTTGCATTCATTGTAACATTTCTTTTTTTCTTG 4 89 1 TCTTATTTCT 0.977575 -309 ATTGAGTACTTGTATGTGATATTTCTAATTTAAGAA 4 291 1 TGTTATTTCT 0.962127 -107 TATATTCTTTTTCCTTTGGGATTATTCATATTCCAA 4 339 1 TTTTATTATT 0.806881 -59 CTTGGTGTTAAATTGCTGAATAAGTAT 4 381 0 TTTTATTGCT 0.801007 -17 TAACCAGATTTTGGTTTGGTATTACTTCTATAAAGT 5 37 0 TTTTATTACT 0.916727 -289 ATAGTTATAGTCAATCTACAATTTATCTCACAAAAG 5 261 1 TCTTATTTAT 0.774511 -65 AGACCCTCTGTCACTCTGAAATTTCTAATAATTATG 6 30 1 TCTTATTTCT 0.977575 -410 AAAAATTTATTTCTTTTTTTATTTCTTTTTTTTTTT 6 235 1 TTTTATTTCT 0.959097 -205 CTTTTCTGTATCTCATTCAAATTATTTTCTTGTCAA 6 367 1 TCATATTATT 0.642438 -73 ACTAGGCGCTTCCAATTGCCATTTCTTGCTCAGCCA 7 128 1 TCATATTTCT 0.909774 -173 CTTGATTATTTGATTGTTACATTATTATCAACGCGG 8 271 1 TGTTATTATT 0.819059 -169 ACTGTTTCGATCATTTTTCTTTTTCTTTTTCTTTAT 9 31 0 TCTTTTTTCT 0.777842 -333 TTGTAGCAAATGTCTGTATGATTTTTTTTCTTCATC 9 78 1 TGTTATTTTT 0.906028 -286 TCTAAGTTCTTCATTCTTTGATTTCTCAAAACAAAT 9 149 1 TCTTATTTCT 0.977575 -215 ** * * ****** Masking position 7 Map Score: 10.2887 Number of sites scoring better than the average of aligned sites = 1548 Number in coding regions = 1006 Number in noncoding regions = 542 Number of orfs with sites within 600 bp upstream = 392 Fraction of orfs with sites within 600 bp upstream = 0.0629618 Motif number 9 GGAAACATACAAGAACGTTAAAAATGTGAGCGTATT 1 37 0 AACTAAAATG 0.86072 -264 TGCTTGAAGTAAAGTCACTAAAAGTACTTTTGTCAT 1 240 1 AACTAAAATA 0.972972 -61 CAAATAAAAAAAAAATATTAATAATAGATAGGCAAC 2 249 1 AATTAATATA 0.764063 -117 GCTTTCGTTAAAAGGCTGTAAAATGAAGTTAAGCTA 2 305 0 AACTAAAAGA 0.938349 -61 GCAAAAAACTAAATGCTATAATATTATGCTGAATGG 3 104 0 AACTAATATA 0.932054 -200 TACTAACCCTAAGGCCTGAAAAATGAACAGAGTTTT 4 141 1 AACAAAAAGA 0.886864 -257 TTTAAACTGAAATTTTATAAAAACTCTGTTCATTTT 4 160 0 AATAAAAATC 0.667797 -238 GGACCGCGATAAAAGTCTAGCTGCCGG 7 2 1 GACTAAAATC 0.816421 -299 GGTGATGCTTAAAATTTGAAAAATTATTGCAGATTT 7 197 1 AATAAAAATA 0.814013 -104 AAATTTTTACAACAACGCAAAAACGAAATACCCCAC 8 12 1 AACAAAAAGA 0.886864 -428 TTAACCACTTAACGACATTAATATTAATTACAAAAG 8 51 1 AACTAATATA 0.932057 -389 AAAGGTCGTCGAAATCTATAATAGTACGTGTATCAA 8 90 0 GACTAATATA 0.78642 -350 AGTAGGCTTAAAATATATTAAAATTATTAAAGGTAT 8 137 0 AATTAAAATA 0.894696 -303 GCCCAAAAAAAAAACCCAAAAAAATCAACATTTAAA 8 184 1 AACAAAAATC 0.895091 -256 AGCAACCAAGAACATCTATAAAAATACTTACCACCT 8 405 1 AACTAAAATA 0.97297 -35 ** * ***** ** Masking position 10 Map Score: 4.53561 Number of sites scoring better than the average of aligned sites = 1759 Number in coding regions = 1204 Number in noncoding regions = 555 Number of orfs with sites within 600 bp upstream = 404 Fraction of orfs with sites within 600 bp upstream = 0.0648892 Motif number 10 TAAATAACGGTCGACTGATCAACACTATAAAT 2 8 0 TCGATCAAAC 0.984727 -358 CACATCGCTTTCAAGAGCGCAAAGCCTGAGGGATA 2 141 0 TCAAGCAAGC 0.969246 -225 CCCCTATATATCAAACTGTTAATACTTATGCTTTC 2 335 0 TCAATTAAAC 0.884569 -31 AAAAGGAATTTCGAATTCTCAACATTATTAGCACC 6 172 0 TCGATCAAAT 0.863404 -268 AATAAATTTTTCAATCATTCAATACGGAATACGCC 6 211 0 TCAATCAAAC 0.987368 -229 AATGTAACAATCAAATAATCAAGACAACAGCAGAG 8 259 0 TCAATCAAAC 0.987369 -181 TGCAAATTTTTCAATCAAGCAAAGCATTGCAAAAT 8 318 1 TCAAGCAAGC 0.969246 -122 AGATGTAGAGTTAAAGGAGCAATACGAATAGGTGC 9 117 0 TTAAGCAAAC 0.926987 -247 TCTTCATTCTTTGATTTCTCAAAACAAATATCACT 9 156 1 TTGATCAAAC 0.926987 -208 **** **** ** Masking position 11 Map Score: 1.99089 Number of sites scoring better than the average of aligned sites = 369 Number in coding regions = 296 Number in noncoding regions = 73 Number of orfs with sites within 600 bp upstream = 58 Fraction of orfs with sites within 600 bp upstream = 0.00931577 Motif number 11 GTAAAAGAATGAAAGTTTGGAAACATACAAG 1 60 0 GAAATTTGGA 0.915124 -241 TCTCTGTAAAGCCATTTTGTATGAATTTCAT 1 182 0 GCCATTTGTA 0.905972 -119 GGTTTGTTAAGCCATTTTAGACGAGGGACTA 2 93 1 GCCATTTAGA 0.96125 -273 TAAGTAAATTGCCAGTTTATATTTACTATTT 3 192 0 GCCATTTATA 0.92135 -112 GTATAATACAGACGCTTTAGATCTCCGTAGC 3 261 1 GACGTTTAGA 0.770116 -43 ATTTTAAACTGAAATTTTATAAAAACTCTGT 4 167 0 GAAATTTATA 0.860916 -231 TAAGCTCATCGCAAATTTTTCAAGTAAAATG 4 248 0 GCAATTTTTC 0.777412 -150 ACCTAGAGATGAAATTTTAAAAATTTTTTTT 5 118 1 GAAATTTAAA 0.562377 -208 ATCTTTCGTTGCAGTTTTGGCTTAGTCTATT 5 298 0 GCAGTTTGGC 0.895849 -28 ATAATTATTAGAAATTTCAGAGTGACAGAGG 6 34 0 GAAATTCAGA 0.640098 -406 CACTATTAAGGCAAATTTAGAGCAAAT 6 423 1 GCAATTTAGA 0.976148 -17 AAAAATTATTGCAGATTTGTATTATATAGAA 7 215 1 GCAGTTTGTA 0.870763 -86 TTTTTTTTGGGCAATTTTAGAGCAGTAGGCT 8 165 0 GCAATTTAGA 0.976213 -275 TTACCCGTATGCAAATTTTTCAATCAAGCAA 8 309 1 GCAATTTTTC 0.777412 -131 TAAAGGTAATGCAAATTTTGCAATGCTTTGC 8 336 0 GCAATTTTGC 0.780184 -104 **** ****** Masking position 6 Map Score: 6.09769 Number of sites scoring better than the average of aligned sites = 1899 Number in coding regions = 1536 Number in noncoding regions = 363 Number of orfs with sites within 600 bp upstream = 316 Fraction of orfs with sites within 600 bp upstream = 0.0507549 Motif number 12 GTTTACCTTAATCACTCTTTACGTAATGAAACC 5 88 1 ATCACTTACG 0.992727 -238 TTTAAATAGCACGACTATAAACGGGATACACAA 6 96 0 ACGACTTACG 0.946401 -344 CAACATTATTAGCACCTTGTACGAAGGTGTATT 6 155 0 AGCACCTACG 0.960622 -285 AAATTTTTCAATCATTCAATACGGAATACGCCT 6 210 0 ATCATTAACG 0.84802 -230 AACAGAATTAAGCACTATTAAGGCAAATTTAGA 6 411 1 AGCACTTAGG 0.938276 -29 GAATCTAACCATGACTTAAAACGGTGAGGTTCA 7 93 0 ATGACTAACG 0.946462 -208 TAGCGTTTGGATCACTATTCACGGTTATGGCTG 7 158 0 ATCACTTACG 0.992727 -143 CAAAACAAATATCACTGTCAACGTAAATATTAC 9 175 1 ATCACTTACG 0.992727 -189 ****** * *** Masking position 4 Map Score: 1.43057 Number of sites scoring better than the average of aligned sites = 254 Number in coding regions = 98 Number in noncoding regions = 156 Number of orfs with sites within 600 bp upstream = 212 Fraction of orfs with sites within 600 bp upstream = 0.0340508 Motif number 13 ATAGCAGCTCAGAGATATAGCTTAACTTCA 2 288 1 AGAGATATAG 0.869333 -78 ATGTGTTAAAGAAAAAGATGT 3 2 1 TGTGTTAAAG 0.918765 -302 GGAATAGGCTAGTGTTATAG 4 1 0 AGTGTTATAG 0.90659 -397 GTTTTGGCTGATAGTTATAGTCAATCTACA 5 251 1 ATAGTTATAG 0.840764 -75 TAGAAATTTCAGAGTGACAGAGGGTCTTTG 6 27 0 AGAGTGACAG 0.93053 -413 CCACGCTAGTATAGATACAGCTTGATTTGT 6 70 1 ATAGATACAG 0.79496 -370 ATAATTTGAATGAGATACAGAAAAGTATAA 6 362 0 TGAGATACAG 0.908937 -78 AGTGCTTAATTCTGTTACAGGTTGTTGACA 6 397 0 TCTGTTACAG 0.816011 -43 ACTTAGATGTAGAGTTAAAGGAGCAATACG 9 126 0 AGAGTTAAAG 0.967763 -238 TTCCCTTAAAATTGTTAAAGAACTCGCGGG 9 208 0 ATTGTTAAAG 0.81458 -156 ATCGGTAGTGTCAGTTAAAGGATATTTTAA 9 308 1 TCAGTTAAAG 0.869145 -56 AAAACCCCTTTGAGTGAAAGTATTACAAGA 9 340 1 TGAGTGAAAG 0.883144 -24 ********** Masking position 7 Map Score: 2.61321 Number of sites scoring better than the average of aligned sites = 908 Number in coding regions = 677 Number in noncoding regions = 231 Number of orfs with sites within 600 bp upstream = 195 Fraction of orfs with sites within 600 bp upstream = 0.0313203 Motif number 14 ********** No masking Map Score: -1.39023e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -1.39023e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0