AlignACE version 2.2 July 7, 1998 AlignACE -jERG.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YGL012W 556 bp YGL012W ERG4 1-1422 Sterol C-24 reductase #2 YGR060W 600 bp YGR060W ERG25 1-930 C-4 sterol methyl oxidase #3 YGR175C 300 bp YGR175C ERG1 1-1491 Squalene monooxygenase #4 YHR007C 600 bp YHR007C erg11 1-1593 cytochrome P450 lanosterol 14a-demethylase #5 YHR072W 600 bp YHR072W ERG7 1-2196 2,3-oxidosqualene-lanosterol cyclase #6 YHR190W 300 bp YHR190W ERG9 1-1335 squalene synthetase #7 YJL167W 585 bp YJL167W ERG20 1-1059 Farnesyl diphosphate synthetase (FPP synthetase) #8 YLR056W 600 bp YLR056W ERG3 1-1098 C-5 sterol desaturase #9 YML008C 600 bp YML008C erg6 1-1152 S-adenoslymethionine: delta 24-methyltransferase #10 YMR015C 600 bp YMR015C ERG5 1-1617 cytochrome P450 involved in C-22 denaturation of the ergosterol side-chain #11 YMR202W 492 bp YMR202W ERG2 1-669 C-8 sterol isomerase #12 YMR208W 600 bp YMR208W erg12 1-1332 mevalonate kinase #13 YMR220W 300 bp YMR220W ERG8 1-1356 48 kDa Phosphomevalonate kinase #14 YNL280C 505 bp YNL280C ERG24 1-1317 sterol C-14 reductase #15 YPL028W 376 bp YPL028W erg10 1-1197 acetoacetyl CoA thiolase Motif number 1 ATTAGGTCTTGAACAAGAAAAGAAACTCCAT 1 239 1 GAAAAGAAAA 0.96387 -318 CGTTACTATGGAAAAGCAGAATTATATATCC 1 432 1 GAAAGCAGAA 0.711617 -125 AGGCAAGCAAGAAAAAAAAAATTGGTGGGAA 2 275 0 GAAAAAAAAA 0.962558 -326 AAGAAGAGAAGAAGAAAAAAAAGAATAGATC 2 449 0 GAAAAAAAAA 0.962558 -152 AAAAGGGAGAGAAGAAGAGAAGAAGAAAAAA 2 460 0 GAAAAGAGAA 0.906422 -141 AGATTTACTGGAAGGAAAGAAACGAAGAGAG 2 495 0 GAAGAAAGAA 0.821983 -106 GCTACTATCTAAAGAGAAAAAGTTACAACTA 2 532 0 AAAAGAAAAA 0.846302 -69 GCCATAAAAAAAAGAGGAAAAG 2 589 1 AAAAGGAAAA 0.851059 -12 AAGAAATAAGGAAAAGGAAAAGCAAACAACA 3 126 0 GAAAGGAAAA 0.967982 -175 AATTTTCAATGAAAAAAAAAAAAAAAAGAAA 3 174 0 GAAAAAAAAA 0.962558 -127 TCGAACAATTGAAAAAAAAAAATCACAGAAA 3 260 1 GAAAAAAAAA 0.962558 -41 CTCATACCAAGAAAAAAAAAAAATTCAGGCA 4 217 0 GAAAAAAAAA 0.962558 -384 AATTAAGAGGGAATAAGAAAACTAAGGGAAA 4 358 0 GAAAAGAAAA 0.96387 -243 AAAAGACATTGAAAGAGAGAATTAAGAGGGA 4 377 0 GAAGAGAGAA 0.82734 -224 AAGGAAAAGGGAAAAAAAAAAAGACATTGAA 4 395 0 GAAAAAAAAA 0.962558 -206 ACGAAAAGGGAAAAAGGAAAAGGGAAAAAAA 4 408 0 AAAAGGAAAA 0.851059 -193 CTGCAATTGTGAAGGAAAAAAAATTTTTTCT 4 541 0 GAAGAAAAAA 0.927101 -60 CAGCAGGCTTGAATAGAAACAGAACAAACGA 4 569 1 GAAAGAAACA 0.887374 -32 ACATTTTCTCAAAAAAAAAAAAATATAATAC 5 471 1 AAAAAAAAAA 0.829321 -130 AAGTGCAGTGGAAAAGAAAAAGGGCAAAGCA 6 104 0 GAAAGAAAAA 0.966813 -197 CAGGGGCAAAGAATAAGAGCACAGAAGAAGA 6 223 1 GAAAAGAGCA 0.723732 -78 TAAGAGCACAGAAGAAGAGAAAAGACGAAGA 6 236 1 GAAAAGAGAA 0.906422 -65 GAGAAAAGACGAAGAGCAGAAGCGGAAAACG 6 252 1 GAAAGCAGAA 0.711617 -49 TGTTTGCAGTGAATAAAAAAAAAAAAACGTT 7 180 1 GAAAAAAAAA 0.962558 -406 TTCATAGCCGAAAGAAGAAAAACTGAAAAAA 8 49 1 AAAAAGAAAA 0.834502 -552 AAGAAAAACTGAAAAAAAAAATGATACGAAA 8 63 1 GAAAAAAAAA 0.962558 -538 AATAGAAGGTGAAGAAGAACAGCAGGTGCAT 8 340 1 GAAAAGAACA 0.878274 -261 ATGAACAAGTGAATGAAAAAACGAATTGATA 8 475 0 GAAGAAAAAA 0.927101 -126 CCCGCACCCAGAAAAAGAAAAGAGTAACCTA 9 51 1 GAAAAGAAAA 0.96387 -550 TTACAAAGACGAATGGAAAGAAAAAGAGAGC 9 467 0 GAAGGAAAGA 0.705509 -134 AATCTTGTTGGAAGAAAAAAATTATATATAA 10 446 1 GAAAAAAAAA 0.962558 -155 TTGTCTATTGGAATAGCAAAATGTGATGTTT 10 562 0 GAAAGCAAAA 0.871735 -39 ATTCAAACAAAAAAAAAAAAAAAAACAAGGG 11 161 1 AAAAAAAAAA 0.829321 -332 ATCTTGGGTAGAAAGGGAAGACAATTACACA 12 139 0 GAAGGGAAGA 0.713148 -462 TACGAGATCTAAAAGGAAAAAAGTTCGGTTT 13 161 1 AAAGGAAAAA 0.731465 -140 ACGTCATGTCGAATGGAAAGAAAGATTATAT 13 205 1 GAAGGAAAGA 0.705509 -96 ATTATATAAAGAATGGAAAAACAAAAAAGGT 13 229 1 GAAGGAAAAA 0.935114 -72 TATATCCTGTAAATAGAAACAGCTACACTGC 15 18 1 AAAAGAAACA 0.598262 -359 AAAATATATAAAAGAGGAACAAGCGCTTCCA 15 253 1 AAAAGGAACA 0.607134 -124 *** ******* Masking position 8 Map Score: 52.5666 Number of sites scoring better than the average of aligned sites = 5752 Number in coding regions = 2572 Number in noncoding regions = 3180 Number of orfs with sites within 600 bp upstream = 1980 Fraction of orfs with sites within 600 bp upstream = 0.318021 Motif number 2 TAAACGAGAAGAAACGAGCCCTGATTTACA 1 317 0 GAAACGAGCC 0.877057 -240 GTTTAGTTATTAAACGAGAAGAAACGAGCC 1 327 0 TAAACGAGAA 0.933072 -230 GTTTAATAACTAAACGAGACTCATTTCTTT 1 342 1 TAAACGAGAC 0.96415 -215 CATCTGGGCGTAAACGACACCCGATAACTG 2 50 0 TAAACGACAC 0.937016 -551 CTGTGTTCCGTATACGAAGGGAGGCAGTGG 2 115 0 TATACGAAGG 0.749302 -486 TGGAAGGAAAGAAACGAAGAGAGAGAAAAA 2 488 0 GAAACGAAGA 0.818109 -113 AAAAACGAGACAAACGAAGCGCTGGCCCTA 4 77 1 CAAACGAAGC 0.842099 -524 GCGCTGGCCCTAAACGAAACGAAACGAAAC 4 95 1 TAAACGAAAC 0.943376 -506 TAAACGAAACGAAACGAAACTAAGATTTCA 4 105 1 GAAACGAAAC 0.874154 -496 TAAACGATTATAAACGAAAAGTTTCCGCAG 5 406 0 TAAACGAAAA 0.896226 -195 GTTTAGTGCCTAAACGAGCAGCGAGAACAC 6 162 1 TAAACGAGCA 0.898679 -139 TCGTCGGTTCTAAACGAAACGCCTTGTTGA 7 395 1 TAAACGAAAC 0.943376 -191 AAAAAAAAATGATACGAAAAAACCGCGAAA 8 75 1 GATACGAAAA 0.504563 -526 AAAAAACCGCGAAACGACGCCTTTTGTTGC 8 91 1 GAAACGACGC 0.885688 -510 CACTGCGGCCTAAACGACCGAGATCGGTGC 8 183 1 TAAACGACCG 0.827771 -418 GGGGCGCAACTAAACGACCGAAATAATGCC 8 240 0 TAAACGACCG 0.827771 -361 AACCGGGGTGTATACGAGGCCGATGGCTGC 8 275 1 TATACGAGGC 0.904776 -326 ATGGCTGCGATAAACGAAAAATTCAGGCTC 8 297 1 TAAACGAAAA 0.896226 -304 TTGTGCCACTTATACGAGCCTGAATTTTTC 8 312 0 TATACGAGCC 0.828748 -289 CGAGGTACCATATACGAAGATCGGGGCTTT 9 166 0 TATACGAAGA 0.753157 -435 GAAACGGCAGTAAACGACGCCAAAAATTGA 9 211 0 TAAACGACGC 0.948936 -390 CTGGATTTTTTAAACGAGAAACTCGTAAAG 10 138 1 TAAACGAGAA 0.933072 -463 TTCGCAGACTTAAACGAGGGAAACCTTCTC 10 226 0 TAAACGAGGG 0.944626 -375 CCTTGCGGCTTATACGAGGGCCGTGGTTCG 11 305 0 TATACGAGGG 0.828321 -188 GAAAATCATCCAAACGAGAACGATAGCACC 11 344 0 CAAACGAGAA 0.78131 -149 GTGCGACAGCCAAACGAGGCCCGAAAATTG 12 439 0 CAAACGAGGC 0.895931 -162 TATTTTCACCTAAACGAAAATCCCGTGAAA 14 231 1 TAAACGAAAA 0.896226 -275 GCTTGGGCGGTAAACGACAGGCACCTCGTT 15 137 0 TAAACGACAG 0.883103 -240 ********** Masking position 4 Map Score: 29.8011 Number of sites scoring better than the average of aligned sites = 728 Number in coding regions = 481 Number in noncoding regions = 247 Number of orfs with sites within 600 bp upstream = 229 Fraction of orfs with sites within 600 bp upstream = 0.0367812 Motif number 3 TTTCTTGGATTCTTTTCTGTATATTCTTGGCT 1 18 1 TCTTTTCTTT 0.813628 -539 AAATGGAGTTTCTTTTCTTGTTCAAGACCTAA 1 240 0 TCTTTTCTGT 0.95356 -317 TCAGGGCTCGTTTCTTCTCGTTTAATAACTAA 1 323 1 TTTCTTCTGT 0.794404 -234 CGAGACTCATTTCTTTTTCGTTCCTTGGCGCT 1 356 1 TTCTTTTTGT 0.696653 -201 CACCAATTTTTTTTTTCTTGCTTGCCTCGCCT 2 279 1 TTTTTTCTGT 0.977973 -322 CTTCTCTCCCTTTTTTCTCTCTCTTCGTTTCT 2 477 1 TTTTTTCTTT 0.904212 -124 TTAGTTGTAACTTTTTCTCTTTAGATAGTAGC 2 531 1 CTTTTTCTTT 0.864816 -70 TTTTCCTCTTTTTTTTATGGCTGTACTACTTT 2 578 0 TTTTTTATGT 0.839738 -23 TTTTCCTTATTTCTTTCTAGCTTCTAATTTTC 3 142 1 TTCTTTCTGT 0.937283 -159 GCTTCTAATTTTCTTTCTTTTTTTTTTTTTTT 3 161 1 TTCTTTCTTT 0.760616 -140 GACCCTTTTCTCGATATGTTTTTCT 3 286 0 CCTTTTCTGT 0.932955 -15 TGAATTTTTTTTTTTTCTTGGTATGAGCACAT 4 221 1 TTTTTTCTGT 0.977973 -380 GGAAAAAAAATTTTTTCTGGAAACTATTAATT 4 527 0 TTTTTTCTGA 0.713891 -74 TTCAATAGCATCTTTTCTAGATTTGATATCTG 5 377 1 TCTTTTCTGT 0.95356 -224 ATGTATTATATTTTTTTTTTTTTGAGAAAATG 5 472 0 TTTTTTTTTT 0.591939 -129 TTTAACGTTTTTTTTTTTTTATTCACTGCAAA 7 182 0 TTTTTTTTTT 0.591939 -404 TTACTCTTTTCTTTTTCTGGGTGCGGGTAACA 9 46 0 CTTTTTCTGT 0.967834 -555 ATATTATTATTTTATTCTTGTTTTTTTAAATT 9 564 0 TTTATTCTGT 0.722762 -37 AAGTCTCGTACCTTTTATCGCTGCTGACAAAA 10 254 1 CCTTTTATGT 0.621536 -347 TCTTACTCATTTCTTTCTTGTTATATTGTTTC 10 507 1 TTCTTTCTGT 0.937283 -94 GATCCAAACTCTTTTTCTAGTTCCGATAAATT 11 40 1 CTTTTTCTGT 0.967834 -453 TGTTTTTTTTTTTTTTTTTGTTTGAATAACTG 11 156 0 TTTTTTTTGT 0.872169 -337 AGGAACCTCTCTTTTTATTGCTTATGACAGTA 12 271 0 CTTTTTATGT 0.78027 -330 TAAGCCTACTCGTTTTCTAGTTCTCTGAAAAA 15 297 1 CGTTTTCTGT 0.761373 -80 ******** * * Masking position 6 Map Score: 17.9006 Number of sites scoring better than the average of aligned sites = 2046 Number in coding regions = 1347 Number in noncoding regions = 699 Number of orfs with sites within 600 bp upstream = 563 Fraction of orfs with sites within 600 bp upstream = 0.0904272 Motif number 4 TATATACACACGATTAATCCGTTATGCATGT 2 357 1 CGATTAACCG 0.87043 -244 CATGCGAGTACGTAAACGTCGTTAACTCGTG 4 268 0 CGTAAACTCG 0.793106 -333 TAGTGTTCCTCGATAAAGTCGATGTTTCCGG 5 86 1 CGATAAATCG 0.898551 -515 AACCCAAAACCGATAACGCCTTCCGATGCAA 6 134 0 CGATAACCCT 0.913162 -167 ATCACACGTTCGAAAGCCCCTTTGAAAAGCT 7 73 1 CGAAAGCCCT 0.781414 -513 AAAAATGATACGAAAAAACCGCGAAACGACG 8 79 1 CGAAAAACCG 0.979362 -522 GCAGACCACCCGAAAACTCCCGGGCATTATT 8 218 1 CGAAAACCCC 0.919039 -383 TTGGGCCCCGCCAAAGCGCCGTCTTTGTCAT 9 13 0 CCAAAGCCCG 0.829964 -588 TTGCTGTTGCCGATAACTTCTTCATTGCTTT 9 401 1 CGATAACTCT 0.661884 -200 TTTCTAGTTCCGATAAATTCCTTACCTTCTT 11 53 1 CGATAAATCC 0.595501 -440 CCACGGCCCTCGTATAAGCCGCAAGGAAAAC 11 309 1 CGTATAACCG 0.670179 -184 CAAACGAGAACGATAGCACCGGTAGTTTTCC 11 333 0 CGATAGCCCG 0.95874 -160 GGGGCACGAGCCAAAAAGCCGTGGACAGAAT 13 50 1 CCAAAAACCG 0.90912 -251 GTTAACTCCGCCTTAAAACCGAACTTTTTTC 13 176 0 CCTTAAACCG 0.750806 -125 TTCGACATGACGTTAACTCCGCCTTAAAACC 13 187 0 CGTTAACCCG 0.953686 -114 TTCACCTAAACGAAAATCCCGTGAAAAAAAT 14 235 1 CGAAAATCCG 0.870157 -271 TGTTAGGAAACGATAAACCCGGCAGGGCACA 15 92 0 CGATAAACCG 0.979436 -285 TACTCTCCAGCGAAAAAACCGGCTTGGGCGG 15 157 0 CGAAAAACCG 0.979362 -220 ******* *** Masking position 10 Map Score: 10.562 Number of sites scoring better than the average of aligned sites = 668 Number in coding regions = 559 Number in noncoding regions = 109 Number of orfs with sites within 600 bp upstream = 91 Fraction of orfs with sites within 600 bp upstream = 0.0146161 Motif number 5 GCAGAGCCAGTTATCGGGTGTCGTTTACGCCCA 2 43 1 TTATCGGTTG 0.977089 -558 TTGCTGACTGTTATCGGTCATTGTTAGTTGCTA 2 180 0 TTATCGGCTG 0.992374 -421 TTTTCGTGGATTATCGGCCTTTAAGATTGTCCA 4 48 0 TTATCGGCTA 0.952487 -553 ATTGGTAAGGTTATTGGGCACAGCAGTACATTA 5 547 0 TTATTGGCCG 0.839219 -54 TCGGAAGGCGTTATCGGTTTTGGGTTTAGTGCC 6 139 1 TTATCGGTTG 0.977089 -162 CTTCCTCTATTTATCGGTCTTTTTCAACAAGGC 7 415 0 TTATCGGCTT 0.91915 -171 TTTGTTGCGATTGTCGGGCATCGCAAGTTACGA 8 113 1 TTGTCGGCTG 0.960792 -488 TTTTTTGTATTTATCGGAAACGGCAGTAAACGA 9 224 0 TTATCGGACG 0.959745 -377 AATGAAGAAGTTATCGGCAACAGCAAGTATTGG 9 394 0 TTATCGGACG 0.959742 -207 GGTAAGGAATTTATCGGAACTAGAAAAAGAGTT 11 46 0 TTATCGGATG 0.977089 -447 AACGTGTATTTTATCGGTTGTAATTGTACTGAC 12 407 1 TTATCGGTTA 0.867902 -194 GTACTGACAATTTTCGGGCCTCGTTTGGCTGTC 12 432 1 TTTTCGGCTG 0.942967 -169 ******* * * * Masking position 4 Map Score: 8.59558 Number of sites scoring better than the average of aligned sites = 150 Number in coding regions = 109 Number in noncoding regions = 41 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097 Motif number 6 ACCAATTTTTTTTTTCTTGCTTGCCTCGCCTCTGCTGTGGT 2 280 1 TTTTCTTTGT 0.805355 -321 GTACGCCTGTGTATGCATACTTCTATATAATATATAATACA 2 404 1 GTATCTTTTT 0.797541 -197 TCTATTCTTTTTTTTCTTCTTCTCTTCTTCTCTCCCTTTTT 2 451 1 TTTTCTTTTT 0.976275 -150 GCTGTACTACTTTTCCTTAGTCCTCTATGCTACTATCTAAA 2 550 0 TTTTCTTTTT 0.976275 -51 TCTATGCTTTTTTTTCCTATTGTTGTTTGCTTTTCCTTTTC 3 106 1 TTTTCTTTTT 0.976275 -195 TTGCTTTTCCTTTTCCTTATTTCTTTCTAGCTTCTAATTTT 3 132 1 TTTTCTTTTC 0.805355 -169 CTAGCTTCTAATTTTCTTTCTTTTTTTTTTTTTTTTCATTG 3 158 1 ATTTCTTTTT 0.801984 -143 CTCGATATGTTTTTCTGTGATTTTTTTTTTTCAATTGTTCG 3 261 0 TTTTTTTTTT 0.762069 -40 AGTTAACGACGTTTACGTACTCGCATGTATTCGAAAAGCCT 4 272 1 GTTTCTTTTT 0.968967 -329 TTTTCCCTTAGTTTTCTTATTCCCTCTTAATTCTCTCTTTC 4 357 1 GTTTCTTCTT 0.77789 -244 TTTTTTTCCCTTTTCCTTTTTCCCTTTTCGTTATTGGTAAA 4 408 1 TTTTCTTTTT 0.976275 -193 GAAGTAATAATTTTTCATTATATTAATTAATAGTTTCCAGA 4 503 1 TTTTCTTATT 0.845951 -98 GGCTTCCTCATTTTTCATGCTTAGTTTTTGTCCATCTCATT 5 197 1 TTTTCTTTTT 0.976275 -404 ATGGTTCCCATTTTGCTTATTCTTCACTATTGAGAATTTAA 5 280 0 TTTTCTTATT 0.845951 -321 GTTTCGCGGTTTTTTCGTATCATTTTTTTTTTCAGTTTTTC 8 65 0 TTTTCTCTTT 0.805355 -536 TAGACGAATATTTTTCTTATTATCTTTTTTTACAAATGCAA 8 560 0 TTTTCTTTTT 0.976275 -41 TTTCATTCAAGTTTCCCTTATCTGTTTTACTTTCGATTTAA 9 514 1 GTTTCTTTTT 0.968967 -87 CACAACCCTTGTTTTTTTTTTTTTTTTTGTTTGAATAACTG 11 156 0 GTTTTTTTTT 0.708482 -337 TCATTCTTCATTATTCATCTTTTCTTGTCATCTGCCGCCCA 12 183 1 TTATCTTTTT 0.838489 -418 TTAATAATCAGTTTTCATTCTACTATTTTCTTGCGCAATTG 14 411 1 GTTTCTTTTT 0.968967 -95 **** * * * * * * Masking position 8 Map Score: 16.4935 Number of sites scoring better than the average of aligned sites = 895 Number in coding regions = 346 Number in noncoding regions = 549 Number of orfs with sites within 600 bp upstream = 393 Fraction of orfs with sites within 600 bp upstream = 0.0631224 Motif number 7 ATTATTATTATTCATTCTCTGCGCAGTTTAAA 2 324 1 TTCATTCTTC 0.66034 -277 GCATGTACATTTTCTTGTATGCGTACGCCTGT 2 382 1 TTTCTTGTTC 0.819678 -219 TCTTTTTTTTCTTCTTCTCTTCTTCTCTCCCT 2 456 1 CTTCTTCTTC 0.982136 -145 TTGTTGTTTGCTTTTCCTTTTCCTTATTTCTT 3 125 1 CTTTTCCTTC 0.803413 -176 ACCTACCACACTTATTGTGTTCTGCAAGAGAC 4 161 0 CTTATTGTTC 0.876417 -440 TCCCATTTTGCTTATTCTTCACTATTGAGAAT 5 284 0 CTTATTCTCC 0.746397 -317 TTGCTTTGCCCTTTTTCTTTTCCACTGCACTT 6 103 1 CTTTTTCTTC 0.916289 -198 CTTCTGTGCTCTTATTCTTTGCCCCTGTCCTA 6 218 0 CTTATTCTTC 0.968541 -83 CGTCTTTTCTCTTCTTCTGTGCTCTTATTCTT 6 231 0 CTTCTTCTTC 0.982136 -70 CGCTTCTGCTCTTCGTCTTTTCTCTTCTTCTG 6 244 0 CTTCGTCTTC 0.840151 -57 CTGTCAAACCTTTCTCCTTTCCTGGTTGTTGT 7 22 0 TTTCTCCTTC 0.880497 -564 TCGAAGTCAGCTTCTTCTCGTCGGTTCTAAAC 7 378 1 CTTCTTCTGC 0.840151 -208 CACTTGTTCATTCATTCTTTACATTTGTCTTG 8 495 1 TTCATTCTTC 0.66034 -106 TTGCCGATAACTTCTTCATTGCTTTTTATATA 9 407 1 CTTCTTCATC 0.771679 -194 GTTCGGGTGTTTTCTCCTATCCTCTGCTGCTC 9 439 1 TTTCTCCTTC 0.880497 -162 CTGCTGCTCTCTTTTTCTTTCCATTCGTCTTT 9 462 1 CTTTTTCTTC 0.916289 -139 AAAGATCGTCCTTATTGTCTTCAGGCAAAGGG 10 386 1 CTTATTGTTC 0.876417 -215 TTCTTTTCACTTTCCTCTTTTCTCCCTACAAC 11 79 1 TTTCCTCTTC 0.653561 -414 CCCAAGATGACTTCTTCTTTATCATTCTTCAT 12 162 1 CTTCTTCTTT 0.675664 -439 CACTTGGATGCGTATTCTGTCCACGGCTTTTT 13 62 0 CGTATTCTTC 0.737192 -239 CCTTTTATTCTCTACACCGAATTTG 14 491 0 TTTATTCTTC 0.917016 -15 CCCTGCCGGGTTTATCGTTTCCTAACAGGCAC 15 96 1 TTTATCGTTC 0.487279 -281 ******** * * Masking position 8 Map Score: 11.225 Number of sites scoring better than the average of aligned sites = 2266 Number in coding regions = 1634 Number in noncoding regions = 632 Number of orfs with sites within 600 bp upstream = 488 Fraction of orfs with sites within 600 bp upstream = 0.078381 Motif number 8 CGATAACTGGCTCTGCTCTTTCCTGCGAGATGG 2 26 0 CTCTGCTTTC 0.981413 -575 TTATATGTTTCTATGCTTTTTTTTCCTATTGTT 3 97 1 CTATGCTTTT 0.925855 -204 ATTATGCCATTTCTAGACCGTGTT 5 2 1 TTATGCTTTT 0.7841 -599 ATCCTATTTGCTTTGCCCTTTTTCTTTTCCACT 6 96 1 CTTTGCTTTT 0.797816 -205 TTTTCTTTTCCACTGCACTTTGCATCGGAAGGC 6 115 1 CACTGCTTTC 0.972816 -186 GACAGCACGACTATGCAGTTTTCTATCACACGT 7 49 1 CTATGCTTTC 0.970503 -537 ATTAGGGCAGCTCTGCCATTTTTTTCATAGCCG 8 26 1 CTCTGCTTTT 0.95247 -575 TGGCGTCGTTTACTGCCGTTTCCGATAAATACA 9 219 1 TACTGCTTTC 0.912343 -382 ATAACTTCTTCATTGCTTTTTATATAGTTCGGG 9 413 1 CATTGCTTTT 0.727851 -188 AGTGTATTTGTTCCGCAATTTCCGGGGCGGGTA 10 172 1 TTCCGCTTTC 0.660726 -429 GCTATGTTGATTCTGCTTATTATCAACGAAGTA 11 217 1 TTCTGCATTT 0.591736 -276 TGATCTTATGCAATGCACATTCCTGCCCTTACG 11 258 1 CAATGCATTC 0.847224 -235 ATAATTATTGCGATGCGTTTTTCTATACGAGAT 13 136 1 CGATGCTTTC 0.872798 -165 AACCTTCACACAATGCAAATTTCCGATGATGCC 14 295 0 CAATGCATTC 0.847224 -211 GTCTTTACTCCTATGCTGTTTACAAGGTCTATC 14 459 0 CTATGCTTTC 0.970503 -47 TTATATATTTTACTGCCCTTTGCTCAACGGTGG 15 231 0 TACTGCTTTC 0.912343 -146 ****** *** * Masking position 10 Map Score: 7.14338 Number of sites scoring better than the average of aligned sites = 820 Number in coding regions = 554 Number in noncoding regions = 266 Number of orfs with sites within 600 bp upstream = 195 Fraction of orfs with sites within 600 bp upstream = 0.0313203 Motif number 9 AATGTCTATATGGCCGCTATGGTCCTGCTATCATG 1 112 1 TGGCCGATGC 0.904416 -445 GTAGTGGCAGTGGCCGTTGCGGAGCTGGCTAAACG 2 81 0 TGGCCGGCGC 0.991626 -520 GCATGCCGTGGCTGCTCTCGGTCGGGT 3 3 1 ATGCCGGCGC 0.986636 -298 GTAAGGTTATTGGGCACAGCAGTACATTACTGGAG 5 541 0 TGGGCAGCGC 0.973211 -60 TATGAAAAAAATGGCAGAGCTGCCCTAATCTATTT 8 20 0 ATGGCAGCGC 0.957695 -581 TCGGTCGTTTAGGCCGCAGTGGGTCGTGCCACACG 8 169 0 AGGCCGGTGC 0.990398 -432 CCGAGATCGGTGCCCGGGGCAGACCACCCGAAAAC 8 200 1 TGCCCGGCGC 0.932645 -401 CTTACGCTCCAGGGCAGAATCGAACCACGGCCCTC 11 285 1 AGGGCAATGC 0.833081 -208 CTTATATACCATGGCGCTGCAGATCTATCCAAATT 11 384 0 ATGGCGGCGC 0.977302 -109 TTCTGGTATGATGCCATTGTTGTGCCCTGCCGGGT 15 72 1 ATGCCAGTGC 0.953324 -305 CCAGGTTGATAGGCCACCGTTGAGCAAAGGGCAGT 15 218 1 AGGCCAGTGC 0.982329 -159 ****** ** * * Masking position 5 Map Score: 5.68728 Number of sites scoring better than the average of aligned sites = 228 Number in coding regions = 175 Number in noncoding regions = 53 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 10 TTCCTCGAGGATATATAATTCTGCTTTTCC 1 441 0 ATATATAATT 0.81182 -116 ATTGAAAATTATATATATATATATATATCA 3 195 1 ATATATATAT 0.482895 -106 TTATTTACAGATATACATTTTCTCAAAAAA 5 457 1 ATATACATTT 0.804885 -144 ACATGCGTTTATATATATTTCCTGCCGTTG 7 448 0 ATATATATTT 0.842782 -138 CAATTAGCTTATATATAATTTTTTTCTTCC 10 455 0 ATATATAATT 0.81182 -146 CTATACGTAGATATAAATTTGCAAGTTAGG 12 569 0 ATATAAATTT 0.8303 -32 CACATTCGTCATATATATATACCTCTTGCC 14 88 1 ATATATATAT 0.482895 -418 GCGAAAGGCGATATAAATTTTTTTCACGGG 14 252 0 ATATAAATTT 0.8303 -254 TGTTCCTCTTTTATATATTTTACTGCCCTT 15 244 0 TTATATATTT 0.687729 -133 GCGCCATATCATATATATTTATACAGATTA 15 345 1 ATATATATTT 0.842782 -32 ********** Masking position 5 Map Score: 0.850569 Number of sites scoring better than the average of aligned sites = 356 Number in coding regions = 63 Number in noncoding regions = 293 Number of orfs with sites within 600 bp upstream = 190 Fraction of orfs with sites within 600 bp upstream = 0.0305172 Motif number 11 CTTCCAGTTTCTTGGATTCTTTTCTGTATAT 1 11 1 CTTGATTCTT 0.908604 -546 TTTTCCTTTTCCTTATTTCTTTCTAGCTTCT 3 136 1 CCTTTTTCTT 0.567324 -165 AATTTTCTTTCTTTTTTTTTTTTTTTTCATT 3 167 1 CTTTTTTTTT 0.724255 -134 TTCGAAATAACCTGTATTGTTCAATACTGGA 3 234 0 CCTGATTGTT 0.800916 -67 AAGCGATTATCTTGAAATCTTAGTTTCGTTT 4 116 0 CTTGAATCTT 0.791163 -485 CGATTTTATGCCTGAATTTTTTTTTTTTCTT 4 209 1 CCTGATTTTT 0.959074 -392 CTTTCAATGTCTTTTTTTTTTTCCCTTTTCC 4 393 1 CTTTTTTTTT 0.724255 -208 TAGTAGCATACTTGAAATTTTAACACAATAT 5 117 0 CTTGAATTTT 0.891685 -484 CTAATAGTTTCTTGGAATTTTTCACATGTTT 7 154 1 CTTGAATTTT 0.891685 -432 CTTATACGAGCCTGAATTTTTCGTTTATCGC 8 303 0 CCTGATTTTT 0.959074 -298 TTATTTTATTCTTGTTTTTTTAAATTATGTA 9 559 0 CTTGTTTTTT 0.917534 -42 ACCCCACACCCCTGGATTTTTTAAACGAGAA 10 127 1 CCTGATTTTT 0.959074 -474 TATATTGTTTCCTTAATTTTTATCACAATAA 10 528 1 CCTTATTTTT 0.846912 -73 CTCCACAACCCTTGTTTTTTTTTTTTTTTTT 11 169 0 CTTGTTTTTT 0.917534 -324 TTAGTCCTAACTTGCAAATTTATATCTACGT 12 564 1 CTTGAAATTT 0.429753 -37 **** ****** Masking position 3 Map Score: 4.2653 Number of sites scoring better than the average of aligned sites = 1392 Number in coding regions = 925 Number in noncoding regions = 467 Number of orfs with sites within 600 bp upstream = 376 Fraction of orfs with sites within 600 bp upstream = 0.0603919 Motif number 12 ACCGTATCGCATCGCTTTCCCACCAATTTT 2 259 1 ATCGCTTTCC 0.892072 -342 TCTTGCTTGCCTCGCCTCTGCTGTGGTCGT 2 294 1 CTCGCCTCTG 0.863547 -307 TTTCAAGATAATCGCTTTTCAGATGACAAT 4 130 1 ATCGCTTTTC 0.936648 -471 GGAAGGCGTTATCGGTTTTGGGTTTAGTGC 6 141 1 ATCGGTTTTG 0.760623 -160 TGGTCGTGTTCTCGCTGCTCGTTTAGGCAC 6 167 0 CTCGCTGCTC 0.960792 -134 TGTCCCTTGCATCGCTGCCGTGTGGCACGA 8 151 1 ATCGCTGCCG 0.960792 -450 AACGACCGAGATCGGTGCCCGGGGCAGACC 8 195 1 ATCGGTGCCC 0.840422 -406 ACAATACCCGATCGCTGCTGAACCTCTTGT 8 375 0 ATCGCTGCTG 0.977695 -226 CTCACTTACTCTCGCTTCTCGAAAACTTTT 9 253 0 CTCGCTTCTC 0.94808 -348 CGTACCTTTTATCGCTGCTGACAAAACATA 10 260 1 ATCGCTGCTG 0.977695 -341 CGGTGTTTATATCGCTATTGAAGAGAGCTC 10 315 1 ATCGCTATTG 0.754266 -286 AAAAATTTATATCGCCTTTCGCTCTTTTGT 14 260 1 ATCGCCTTTC 0.836708 -246 ********** Masking position 2 Map Score: 3.53309 Number of sites scoring better than the average of aligned sites = 514 Number in coding regions = 408 Number in noncoding regions = 106 Number of orfs with sites within 600 bp upstream = 107 Fraction of orfs with sites within 600 bp upstream = 0.017186 Motif number 13 ACCTGTATTGTTCAATACTGGACAATTGTT 3 226 0 TTCAATACTG 0.981789 -75 TACACATATTTTAAATACTGATGAAGTGAC 7 315 1 TTAAATACTG 0.911745 -271 ATCCAAATTCTTCCATACTGAAAATCATCC 11 363 0 TTCCATACTG 0.960453 -130 TCAATACTGTTTCAATACTGTTTCAGAAGT 14 158 0 TTCAATACTG 0.981789 -348 ATACATATGTTTCAATACTGTTTCAATACT 14 169 0 TTCAATACTG 0.981789 -337 ********** Masking position 5 Map Score: 2.17408 Number of sites scoring better than the average of aligned sites = 45 Number in coding regions = 34 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 14 GCTACTATCTAAAGAGAAAAAGTTACAACT 2 533 0 AAAGAGAAAA 0.801898 -68 CCATAAAAAAAAGAGGAAAAG 2 590 1 AAGAGGAAAA 0.811715 -11 AGAAATAAGGAAAAGGAAAAGCAAACAACA 3 126 0 AAAAGGAAAA 0.830259 -175 ATAAGAAAACTAAGGGAAAATACGCTATCT 4 347 0 TAAGGGAAAA 0.895334 -254 GGAAAAAGGAAAAGGGAAAAAAAAAAAGAC 4 401 0 AAAGGGAAAA 0.963336 -200 CCAATAACGAAAAGGGAAAAAGGAAAAGGG 4 415 0 AAAGGGAAAA 0.963336 -186 TATAATCGTTTAGGTGAAAAGTTTTTATAT 5 424 1 TAGGTGAAAA 0.838296 -177 TGGAAAAGAAAAAGGGCAAAGCAAATAGGA 6 97 0 AAAGGGCAAA 0.715246 -204 CGAAGAGCAGAAGCGGAAAACGTATACACG 6 261 1 AAGCGGAAAA 0.781376 -40 TTTTAAAGTTAAAATGAAAACTGATAGAAG 7 506 0 AAAATGAAAA 0.770815 -80 GAAAGAAGAAAAACTGAAAAAAAAAATGAT 8 58 1 AAACTGAAAA 0.736029 -543 GGCACAATAGAAGGTGAAGAAGAACAGCAG 8 335 1 AAGGTGAAGA 0.74661 -266 ACGACGCCAAAAATTGAAAATAAGTACGGG 9 198 0 AAATTGAAAA 0.505501 -403 CAGCAGAGGATAGGAGAAAACACCCGAACT 9 438 0 TAGGAGAAAA 0.537364 -163 AGAAAAGAGGAAAGTGAAAAGAAGGTAAGG 11 72 0 AAAGTGAAAA 0.947552 -421 TGGTAATGTAAAAGTGAGAATGTATCCGGC 12 89 1 AAAGTGAGAA 0.633312 -512 TCTTGGGTAGAAAGGGAAGACAATTACACA 12 139 0 AAAGGGAAGA 0.829408 -462 TACGAGATCTAAAAGGAAAAAAGTTCGGTT 13 161 1 AAAAGGAAAA 0.830259 -140 AAAAACAAAAAAGGTGAAAAAACATCTTGG 13 245 1 AAGGTGAAAA 0.94091 -56 GATTTTCGTTTAGGTGAAAATAAAATGAAC 14 223 0 TAGGTGAAAA 0.838296 -283 TCAGACGGAGTACGTGAAAAACGTCCGTTA 14 349 0 TACGTGAAAA 0.461791 -157 ********** Masking position 2 Map Score: 11.6638 Number of sites scoring better than the average of aligned sites = 2059 Number in coding regions = 1133 Number in noncoding regions = 926 Number of orfs with sites within 600 bp upstream = 796 Fraction of orfs with sites within 600 bp upstream = 0.127851 Motif number 15 GCGTCTGTTTCCAACAAAGCCCTATTGGAC 1 279 1 CCAACAAAGC 0.86988 -278 AGCTCCGCAACGGCCACTGCCACTACCACT 2 90 1 CGGCCACTGC 0.955295 -511 AATAATAATACGACCACAGCAGAGGCGAGG 2 303 0 CGACCACAGC 0.978996 -298 AATTTGGGCCCCGCCAAAGCGCCGTCTTTG 9 17 0 CCGCCAAAGC 0.986803 -584 AATTTAGGGCCGAACAAAGCCCCGATCTTC 9 151 1 CGAACAAAGC 0.915801 -450 AAGAAGTTATCGGCAACAGCAAGTATTGGA 9 393 0 CGGCAACAGC 0.930147 -208 CAATTACACACGGCCAAAGCTGGGGGGCTC 12 119 0 CGGCCAAAGC 0.991847 -482 CTGTCGTTTACCGCCCAAGCCGGTTTTTTC 15 147 1 CCGCCCAAGC 0.952062 -230 ********** Masking position 9 Map Score: 3.13424 Number of sites scoring better than the average of aligned sites = 157 Number in coding regions = 121 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665