AlignACE version 2.2 July 7, 1998 AlignACE -jFLO.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YAL063C 600 bp YAL063C FLO9 1-3969 putative Flo1p homolog #2 YAR050W 600 bp YAR050W FLO1 1-4614 FLO1 putative cell wall glycoprotein #3 YER108C 300 bp YER108C FLO8 1-1785 putative transcriptional activator of FLO1 #4 YER109C 600 bp YER109C FLO8 1-426 putative transcriptional activator of FLO1 #5 YHR211W 600 bp YHR211W FLO5 1-3228 Flocculin, similar to flocculation protein Flo1p #6 YKR102W 600 bp YKR102W FLO10 1-3510 Protein with similarity to flocculation protein Flo1p Motif number 1 TCAGGAACAAAGAAGAAAAAGAAAAGTTTTTAAA 1 274 0 AAAGAAAAAA 0.9829 -327 TATGTAATATATAAGAAGGTAGAATAATTTGGCA 1 462 0 AAAGAATGAA 0.965559 -139 GTACCTGTAAATAAGAAGGAAGAACGTTATGTTA 1 525 0 AAAGAAAGAA 0.975333 -76 AATTGCCCTCACAAGAATTTGGAAGTGCGTAGAC 2 119 1 AAAGAATGAA 0.965559 -482 TTTACTGGTGACAAGAATTAAAAATAAGAACCCG 2 563 0 AAAGAAAAAA 0.9829 -38 AAGAATGTGCAGGAGAAGGTAAAACCTGCAGGTA 4 32 0 AGAGAATAAA 0.936801 -569 CATTCTTGTGATAAGAATGTGAAAAATTTTTTGC 4 59 1 AAAGAATAAA 0.976051 -542 AGAGCGTGGGAAGACAACGAAGAAAGAATGGGAT 4 350 1 AGACAAAGAA 0.790067 -251 GAGGCTATAAAAAATAAACACGAAGACGTTTATA 4 542 1 AAATAAAGAA 0.821185 -59 TCAAAAAGAAAGAAGAAAGTAAAAAATGTAACGC 5 15 0 AAAGAATAAA 0.976051 -586 AAAAATATTTATAAGACCTAAAAAGGAGTATTTT 5 117 0 AAAGACAAAA 0.930629 -484 TAATGAGCGCAAAACAAAATAAAAGTTTACGGCC 5 291 0 AAACAATAAA 0.914274 -310 ATTCAAAACGATAAGACTGTGAAAGATTTAACGT 5 443 0 AAAGACTAAA 0.904868 -158 TTTCGACAAGATAATAAATATAAAAAGAGCACCC 5 507 1 AAATAAAAAA 0.869725 -94 ATAATTCCTGAAAAGAATTATAAAGGAAAACAAG 6 122 0 AAAGAAAAAA 0.9829 -479 ACAACCTTAAAAGAGAAATATAAATTTCTACCAC 6 271 0 AGAGAAAAAA 0.954351 -330 TAATCAAAGAACAACAAATAAAAA 6 587 1 AAACAAAAAA 0.937664 -14 * ***** * *** Masking position 6 Map Score: 21.0881 Number of sites scoring better than the average of aligned sites = 3059 Number in coding regions = 1652 Number in noncoding regions = 1407 Number of orfs with sites within 600 bp upstream = 1009 Fraction of orfs with sites within 600 bp upstream = 0.162062 Motif number 2 CGGAGTAGTGATTTTTTCAATGTCTCTATC 1 39 1 ATTTTTTCAA 0.705487 -562 TCTGTAGTACAATCTTTTACCTGTCTACGC 2 145 0 AATCTTTTAC 0.913483 -456 CAAGTGGGTGACTCTTTCAACTGTGCCGTT 2 327 0 ACTCTTTCAA 0.851435 -274 ATAAAAGGAACATATTTCACTCTTGCTCGT 2 516 1 CATATTTCAC 0.850278 -85 TACAGCAAAAAATTTTTCACATTCTTATCA 4 67 0 AATTTTTCAC 0.958224 -534 TCGGCTTCGGACTCTTTTACGAGGGTCCGG 4 319 1 ACTCTTTTAC 0.919609 -282 AAAAATGGTCACTTTTTCAATCTGTATTCT 4 435 0 ACTTTTTCAA 0.83186 -166 AAAAAGTGACCATTTTTTACTCCTGTTCAA 4 448 1 CATTTTTTAC 0.926432 -153 TCTCGCGTTACATTTTTTACTTTCTTCTTT 5 11 1 CATTTTTTAC 0.926432 -590 TTAATTTCACCCTTTTTCACGGCACCCTCG 5 178 1 CCTTTTTCAC 0.971698 -423 AGATACGTTAAATCTTTCACAGTCTTATCG 5 439 1 AATCTTTCAC 0.963729 -162 TGTTTTCTTACTTTTTTCACGGCGGATACA 6 311 0 CTTTTTTCAC 0.943257 -290 TAAAGAGACACTTCTTTTACGTTCCACTGT 6 522 1 CTTCTTTTAC 0.884421 -79 ********** Masking position 9 Map Score: 7.82652 Number of sites scoring better than the average of aligned sites = 1578 Number in coding regions = 986 Number in noncoding regions = 592 Number of orfs with sites within 600 bp upstream = 549 Fraction of orfs with sites within 600 bp upstream = 0.0881786 Motif number 3 AACAAAGAAGAAAAAGAAAAGTTTTTAAAAA 1 272 0 AAAAAGAAAG 0.775482 -329 TTCAGATGGCATAAAGAAAACGTTCGCAGTC 1 311 1 ATAAAGAAAC 0.862741 -290 AATACCTTTAAAAGAGAAAAAATTTTTTAGC 1 402 0 AAAGAGAAAA 0.897563 -199 ATTGCAATTTAAAAAGAACAATTGTACAATA 1 568 1 AAAAAGACAA 0.861786 -33 CAAACTGACGAAAAAGTCAGCCTACGTATTC 2 38 0 AAAAAGTAGC 0.908294 -563 AAAGGCACTCAAAAAGATAAATCAACAATCA 2 291 1 AAAAAGAAAA 0.948297 -310 GGCACAGTTGAAAGAGTCACCCACTTGAAAT 2 330 1 AAAGAGTACC 0.782721 -271 GACCCTCGTAAAAGAGTCCGAAGCCGAGAAG 4 315 0 AAAGAGTCGA 0.585699 -286 ATACAGATTGAAAAAGTGACCATTTTTTACT 4 438 1 AAAAAGTACC 0.882912 -163 AGACATAAATAAAGAGGAAACGCATTCCGTG 4 575 1 AAAGAGGAAC 0.792805 -26 ATCCTAAGTCAAAAAGAAAGAAGAAAGTAAA 5 26 0 AAAAAGAAGA 0.917261 -575 AACAAAAGGGAAAAAGAAAAATACTCCTTTT 5 100 1 AAAAAGAAAA 0.948297 -501 TAATAAATATAAAAAGAGCACCCTCATGATT 5 518 1 AAAAAGACAC 0.87646 -83 CACTATCATGATAAAGTGAACTGGAACTGAA 6 58 0 ATAAAGTAAC 0.831515 -543 GAAAAGAATTATAAAGGAAAACAAGCTTTCG 6 116 0 ATAAAGGAAA 0.679502 -485 TCCGCCGTGAAAAAAGTAAGAAAACATCCAA 6 315 1 AAAAAGTAGA 0.896957 -286 CTAGAGTCTAAAAAAGTTAAACCATGAATCA 6 431 0 AAAAAGTAAA 0.935069 -170 GTGTTGACATATAAAGAGACACTTCTTTTAC 6 511 1 ATAAAGAACA 0.717684 -90 ******* *** Masking position 5 Map Score: 9.001 Number of sites scoring better than the average of aligned sites = 4606 Number in coding regions = 2110 Number in noncoding regions = 2496 Number of orfs with sites within 600 bp upstream = 1712 Fraction of orfs with sites within 600 bp upstream = 0.274976 Motif number 4 AGTTTCTGGCGACCCTCCTGGAATGCTTACCTTG 1 100 1 GACCTCGAAT 0.843533 -501 ACATTTCAGAGCGCATTAATGCATGTAAAGGAAA 1 214 1 GCCATAGCAT 0.859478 -387 CTCATTAATTGCCCTCACAAGAATTTGGAAGTGC 2 113 1 GCCTCCGAAT 0.962981 -488 GTGGACGCAAGCACACGCCTGCATAAACGTTTAA 4 181 0 GCCACCGCAT 0.992726 -420 GCGTGTGCTTGCGTCCACATGCATGCATATCAAT 4 197 1 GCTCCCGCAT 0.980994 -404 GCATGAAATCGCGCCTTCTCGGCTTCGGACTCTT 4 301 1 GCCCTCGGCT 0.921954 -300 CTTTTTCACGGCACCCTCGAGAATTACACTTTGG 5 189 1 GCCCCCGAAT 0.995726 -412 GCTGCATTTCGCGTACTCCTGCATGCAACCAAAG 5 217 0 GCTACCGCAT 0.949908 -384 TTTCCTACCAGCTCCCACTAGGTTTTAATGAGCG 5 316 0 GCCCCCGGTT 0.984236 -285 TATAAAAAGAGCACCCTCATGATTTCTTGCTCTG 5 525 1 GCCCCCGATT 0.989337 -76 CGAATTTTTGGCACACGAAAGCTTGTTTTCCTTT 6 101 1 GCCACAGCTT 0.883086 -500 ATCCAAATGGGCTCCTGCCTGAATGTTTCCTTCG 6 340 1 GCCCTCGAAT 0.986865 -261 ** *** * **** Masking position 14 Map Score: 9.6594 Number of sites scoring better than the average of aligned sites = 279 Number in coding regions = 196 Number in noncoding regions = 83 Number of orfs with sites within 600 bp upstream = 70 Fraction of orfs with sites within 600 bp upstream = 0.0112432 Motif number 5 CAGGATAATGTGTTAGCAAAGGAGGAAATCG 1 433 0 TGTTAGAAAG 0.966571 -168 AAGAACGTTATGTTATTAATGGACTTTTTAG 1 509 0 TGTTATAATG 0.805356 -92 TTTGTATGAATGGTAGCAAATATTCTGGGAC 3 106 1 TGGTAGAAAT 0.980164 -195 CTGGAAGAACTGGTATTAAAGATGTCCCAGA 3 129 0 TGGTATAAAG 0.980164 -172 GCAAACAAAATGGTATCAAAGCAAATGCGCT 4 477 0 TGGTATAAAG 0.980164 -124 TAGTGGGAGCTGGTAGGAAATAAGCTAGTAG 5 330 1 TGGTAGAAAT 0.980164 -271 TAAACACTATTGGTAGAGAAGTTCCTCTGGT 5 394 1 TGGTAGGAAG 0.971079 -207 GCTAACTGTGTGGTAGAAATTTATATTTCTC 6 262 1 TGGTAGAATT 0.947616 -339 ****** **** Masking position 5 Map Score: 4.14761 Number of sites scoring better than the average of aligned sites = 334 Number in coding regions = 269 Number in noncoding regions = 65 Number of orfs with sites within 600 bp upstream = 53 Fraction of orfs with sites within 600 bp upstream = 0.00851269 Motif number 6 GAGCTAATTTCAAGTGGGTGACTCTTTCAAC 2 336 0 CAGTGGGTGA 0.917042 -265 ATTCTTATCACAAGAATGTGCAGGAGAAGGT 4 46 0 CAGAATGTGC 0.940228 -555 AACGTTTATGCAGGCGTGTGCTTGCGTCCAC 4 184 1 CAGCGTGTGC 0.977134 -417 GATATGCATGCATGTGGACGCAAGCACACGC 4 197 0 CAGTGGACGC 0.96629 -404 AGTCCGAAGCCGAGAAGGCGCGATTTCATGC 4 301 0 CGGAAGGCGC 0.891906 -300 AAGTGTAATTCTCGAGGGTGCCGTGAAAAAG 5 189 0 CTGAGGGTGC 0.979612 -412 TGGTTGCATGCAGGAGTACGCGAAATGCAGC 5 220 1 CAGAGTACGC 0.928443 -381 TCATTAAAACCTAGTGGGAGCTGGTAGGAAA 5 319 1 CTGTGGGAGC 0.934542 -282 AGCAAGAAATCATGAGGGTGCTCTTTTTATA 5 525 0 CAGAGGGTGC 0.994248 -76 TGTGATCCGTCACGTGTATGCAAAACGCGTT 6 216 1 CAGTGTATGC 0.927367 -385 AGGAAACATTCAGGCAGGAGCCCATTTGGAT 6 340 0 CAGCAGGAGC 0.913399 -261 ** ******** Masking position 1 Map Score: 5.98212 Number of sites scoring better than the average of aligned sites = 363 Number in coding regions = 263 Number in noncoding regions = 100 Number of orfs with sites within 600 bp upstream = 86 Fraction of orfs with sites within 600 bp upstream = 0.013813 Motif number 7 ACGATATACAGAAAATATATTCTCTGTAAGGA 1 173 1 GAATATATTC 0.562691 -428 TGATCTGACTGCGAACGTTTTCTTTATGCCAT 1 316 0 GAACGTTTTC 0.931249 -285 TTCCTCCTTTGCTAACACATTATCCTGCCAAA 1 437 1 GAACACATTA 0.791844 -164 GAAAAAGTCAGCCTACGTATTCTCCGTCACGG 2 28 0 GTACGTATTC 0.944462 -573 TCCGACTACTGCCTACATATTTATTCGGAAGG 2 459 1 GTACATATTT 0.857826 -142 TACTACCTTCGAGAACGTATTCTGGTTACCAT 3 57 0 GAACGTATTC 0.773526 -244 CCACTCCCAGGGCTACTTATTCGAGGCATTTT 4 137 0 GTACTTATTC 0.895288 -464 TAAATAAAGAGGAAACGCATTCCGTGGTAGA 4 580 1 GAACGCATTC 0.974092 -21 CAACCCTGCAGTGTACGCATTCTTCCCGTTTG 6 183 0 GTACGCATTC 0.980036 -418 TAACTAGCAAGTATACATATTTGCTCAAAACA 6 464 1 GTACATATTT 0.85613 -137 CTCTTTATATGTCAACACTTTCGCACTCGAAC 6 497 0 GAACACTTTC 0.905884 -104 * ********* Masking position 5 Map Score: 3.97121 Number of sites scoring better than the average of aligned sites = 554 Number in coding regions = 428 Number in noncoding regions = 126 Number of orfs with sites within 600 bp upstream = 88 Fraction of orfs with sites within 600 bp upstream = 0.0141343 Motif number 8 GGTGGTATAACACAGAAATTTAAGCAGCTAAAA 1 376 1 CAAAATTTAA 0.847062 -225 AGGAGGAAATCGAATACCTTTAAAAGAGAAAAA 1 412 0 CGAACTTTAA 0.970762 -189 TTTTTAGTGTCATCGAATTTTATGTAATATATA 1 483 0 CACAATTTAT 0.897004 -118 CACACGCCTGCATAAACGTTTAATTCCTCAGTA 4 171 0 CAAACTTTAA 0.944132 -430 AAAATAAACACGAAGACGTTTATAGACATAAAT 4 552 1 CGAACTTTAT 0.984447 -49 CTCTAAAGGCCGTAAACTTTTATTTTGTTTTGC 5 284 1 CGAACTTTAT 0.984447 -317 ATAGTGTTTACACCTACGTTTATTTCCATTCTA 5 371 0 CACACTTTAT 0.963733 -230 TCACTATTGGCGTATACGTTTATCGAAGGAAAC 6 364 0 CGAACTTTAT 0.984447 -237 TGAAGAAAGTCGCCTAAATTTATTCTGTTGTAA 6 394 1 CGCAATTTAT 0.944784 -207 ** * ** ***** Masking position 6 Map Score: 5.16072 Number of sites scoring better than the average of aligned sites = 232 Number in coding regions = 164 Number in noncoding regions = 68 Number of orfs with sites within 600 bp upstream = 55 Fraction of orfs with sites within 600 bp upstream = 0.00883392 Motif number 9 AGAAAGCATAACTCAAAATCTATCGGGTGGTAT 1 351 1 ACTCAAAATT 0.911281 -250 AATTTAAGCAGCTAAAAAATTTTTTCTCTTTTA 1 392 1 GCTAAAAATT 0.984979 -209 CTAATAGTGAGCTAAAAAAGACTTTTGCTAAAT 2 234 0 GCTAAAAAAT 0.931572 -367 CCTTTTATAAGCTCAAAAATTTTCGACATCATG 2 491 0 GCTCAAAATT 0.987529 -110 TGGAAATACAGCAAAAAATTTTTCACATTCTTA 4 70 0 GCAAAAAATT 0.931572 -531 CTTGATGGCTGCTAAAAATATTTATAAGACCTA 5 131 0 GCTAAAAATT 0.984979 -470 ATACATATTTGCTCAAAACATGTTCGAGTGCGA 6 476 1 GCTCAAAATT 0.987529 -125 ******** * * Masking position 7 Map Score: 2.84293 Number of sites scoring better than the average of aligned sites = 131 Number in coding regions = 81 Number in noncoding regions = 50 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 10 AGTTTCTGGCGACCCTCCTGGAATGCTTAC 1 100 1 GACCCTCCTG 0.944557 -501 CGAATAGATTAACCCTGCTGCAGAGCTCTT 2 394 0 AACCCTGCTG 0.992436 -207 GGAGAAGGTAAAACCTGCAGGTAACTTGCA 4 25 0 AAACCTGCAG 0.982974 -576 TTGTGTCATAAAACCCGCTGTTGTGCAACA 5 74 1 AAACCCGCTG 0.931702 -527 AGAATACCAGAACCGTCCAGTGATTCAAAA 5 469 0 AACCGTCCAG 0.968175 -132 GTCTTATAGTAATCGTGCAGTAAATTTTGT 6 26 1 AATCGTGCAG 0.932501 -575 GGATCACAACAACCCTGCAGTGTACGCATT 6 194 0 AACCCTGCAG 0.994181 -407 ********** Masking position 2 Map Score: 2.93017 Number of sites scoring better than the average of aligned sites = 341 Number in coding regions = 277 Number in noncoding regions = 64 Number of orfs with sites within 600 bp upstream = 62 Fraction of orfs with sites within 600 bp upstream = 0.00995824 Motif number 11 TCTTTTTCTTCTTTGTTCCTGACAATTCAGA 1 286 1 CTTTGTTCCG 0.986538 -315 AATAACATAACGTTCTTCCTTCTTATTTACA 1 523 1 CGTTCTTCCT 0.941445 -78 TTGATGTAAGCTCTCTTCCGGGTTCTTATTT 2 545 1 CTCTCTTCCG 0.985405 -56 CTTTAATACCAGTTCTTCCAGAGGTGGCTCA 3 139 1 AGTTCTTCCG 0.970529 -162 TTGTTCCTGCCTTTGTTCTTGAAGAACTAGT 3 193 0 CTTTGTTCTG 0.891107 -108 GCTTCTATATATTTGTTCCTGCCTTTGTTCT 3 205 0 ATTTGTTCCG 0.943698 -96 TGTCTTCCCACGCTCTTCCGGACCCTCGTAA 4 335 0 CGCTCTTCCG 0.987883 -266 GCAGTGTACGCATTCTTCCCGTTTGCTATGC 6 177 0 CATTCTTCCG 0.973146 -424 ********* * Masking position 6 Map Score: 4.02558 Number of sites scoring better than the average of aligned sites = 355 Number in coding regions = 303 Number in noncoding regions = 52 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 12 CATGCATTAATGCGCTCTGAAATGTGGTACGATAT 1 204 0 TGCTAAATGT 0.920421 -397 GATTTTGAGTTATGCTTTCTAATTGATCTGACTGC 1 336 0 TGCTTAATTG 0.965461 -265 AAAAAATTTTTTAGCTGCTTAAATTTCTGTGTTAT 1 382 0 TGCTTAAATT 0.945842 -219 GTAGAATAATTTGGCAGGATAATGTGTTAGCAAAG 1 443 0 TGCATAATGT 0.773256 -158 TATTTACAGGTACGCTCTTTAAATTGCAATTTAAA 1 546 1 TGCTTAAATT 0.945842 -55 CTAGCCTTCCTCTGCTCATTAATTGCCCTCACAAG 2 99 1 TGCTTAATTG 0.965461 -502 AGCTCACTATTAGGCTTGTTAAAGTCTGAAATTGT 2 254 1 TGCTTAAAGT 0.942306 -347 CGAAAATTTTTGAGCTTATAAAAGGAACATATTTC 2 499 1 TGCTAAAAGG 0.963156 -102 CACCGTGTCTTCGGCAAACAAAATGGTATCAAAGC 4 486 0 TGCAAAAATG 0.873986 -115 CCGTTTGCTATGCGCTTCTAAATTGAAGTAAGGTA 6 155 0 TGCTAAATTG 0.959222 -446 AGTATACATATTTGCTCAAAACATGTTCGAGTGCG 6 473 1 TGCTAACATG 0.840359 -128 * *** ****** Masking position 11 Map Score: 2.14597 Number of sites scoring better than the average of aligned sites = 388 Number in coding regions = 279 Number in noncoding regions = 109 Number of orfs with sites within 600 bp upstream = 88 Fraction of orfs with sites within 600 bp upstream = 0.0141343 Motif number 13 ACAGAGGTATTGTGGAACCTTCTACAGTACTTCGG 2 170 1 TTGACCTCAC 0.964336 -431 TTTGCTAAATTTAGCATCCAACAACCTTTTAGGTG 2 209 0 TAGACCACAC 0.992343 -392 TTTATCTTTTTGAGTGCCTTTCAACAATTTCAGAC 2 277 0 TAGGCTTCAC 0.944187 -324 CATTTTATTATTAGGATCCGACTACTGCCTACATA 2 443 1 TAGACCACAC 0.992343 -158 TTTCTTTAGATTTGGGTCCGTCGACTGGGTTTTGG 3 19 0 TTGGCCTCAC 0.944288 -282 GTTTAATTCCTCAGTATCCCACTCCCAGGGCTACT 4 152 0 TAGACCACCC 0.960636 -449 TTTTATAGCCTCAGTGACTTACTAACGTCAACTCA 4 519 0 TAGGCTACAA 0.773929 -82 ATAAATATTTTTAGCAGCCATCAAGTCCGGCTTTC 5 139 1 TAGACCTCAG 0.940638 -462 TACCACACAGTTAGCACATAACTACTCTCTAACGC 6 242 0 TAGAATACAC 0.831819 -359 GTGAAAAAAGTAAGAAAACATCCAAATGGGCTCCT 6 321 1 TAGAACTCAA 0.743897 -280 GTTCTTTGATTAAGCACCCTAAAACAAATCTTCAA 6 564 0 TAGACCAAAC 0.910811 -37 * ** * ** ** ** Masking position 1 Map Score: 1.10233 Number of sites scoring better than the average of aligned sites = 563 Number in coding regions = 455 Number in noncoding regions = 108 Number of orfs with sites within 600 bp upstream = 96 Fraction of orfs with sites within 600 bp upstream = 0.0154192 Motif number 14 TCCACAATACCTCTGTAGTACAATCTTTTA 2 156 0 CTCTGTAGTA 0.967638 -445 TGGTAAAGAGCTCTGCAGCAGGGTTAATCT 2 389 1 CTCTGCAGCA 0.908828 -212 CGCATACTTACGCTGTAGGAACATTTTATT 2 422 1 CGCTGTAGGA 0.934057 -179 GAACTGTGGTCCCTGTTGCGTCCACTATTG 4 227 0 CCCTGTTGCG 0.91546 -374 TCATAAAACCCGCTGTTGTGCAACAAAAGG 5 79 1 CGCTGTTGTG 0.941222 -522 TGATTTCTTGCTCTGCAGTAAATTCCGCAA 5 544 1 CTCTGCAGTA 0.962804 -57 CTATAAGACGCGCTTTAGCAAATC 6 5 0 CGCTTTAGCA 0.862477 -596 ATCACAACAACCCTGCAGTGTACGCATTCT 6 192 0 CCCTGCAGTG 0.629415 -409 ********** Masking position 4 Map Score: 0.744204 Number of sites scoring better than the average of aligned sites = 378 Number in coding regions = 285 Number in noncoding regions = 93 Number of orfs with sites within 600 bp upstream = 78 Fraction of orfs with sites within 600 bp upstream = 0.0125281 Motif number 15 ********** No masking Map Score: 1.04332e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0