AlignACE version 2.2 July 7, 1998 AlignACE -jFRE.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YKL220C 600 bp YKL220C FRE2 1-2136 Ferric reductase, similar to Fre1p #2 YLL051C 332 bp YLL051C FRE6 1-2139 similar to FRE2 #3 YLR214W 600 bp YLR214W FRE1 1-2061 Ferric (and cupric) reductase #4 YNR060W 600 bp YNR060W FRE4 1-2160 similar to FRE2 #5 YOL152W 600 bp YOL152W FRE7 1-1890 similar to FRE2 #6 YOR381W 600 bp YOR381W FRE3 1-2136 similar to FRE2 #7 YOR384W 508 bp YOR384W FRE5 1-2085 similar to FRE2 Motif number 1 AGGCAAAAAAGACCTGGGTGCAATTACGAATA 1 171 0 GACGGGTGCA 0.970795 -430 TGAAGTACCGGTAATGGTTGCATTGACAAATA 1 271 1 GTAGGTTGCA 0.657321 -330 TTTTGTTGAAAATATGGGTGTATCATTCGTGC 1 332 1 AATGGGTGTA 0.976898 -269 AATGCCCACTAGCCGGGGTGTACGGGACCTTA 2 164 0 AGCGGGTGTA 0.847304 -169 TAGAATTACAAATATGGGTGCAAAAACAATGC 2 191 0 AATGGGTGCA 0.992504 -142 AGGATATTAGAAATTGGGTGTATTAGTAAATC 3 378 0 AAAGGGTGTA 0.979622 -223 TGTCTATGTTAAATAGGGTGCAAATTTTTAGA 4 164 0 AAAGGGTGCA 0.9934 -437 GGGTCCTATGAAACCAGGTGCAATTATGGTAT 4 204 0 AAAAGGTGCA 0.881857 -397 ATTTTCAGAAAATGCGGTTGAAAATCCTCGTC 5 234 1 AATGGTTGAA 0.724519 -367 GCATTTTACAAAAGAGGTTGCAACTATCCCGT 6 155 0 AAAGGTTGCA 0.955592 -446 GGCAAAATGAGATATGGGTGCATTTTACAAAA 6 174 0 GATGGGTGCA 0.985508 -427 TTTTGCCTTTATTTCGGGTGTATAATAGGAGA 6 199 1 ATTGGGTGTA 0.880082 -402 TTTTACGTGGAATGTGGGTGTACCTCATCTCA 6 342 1 AATGGGTGTA 0.976898 -259 GGGTGCAAAAAAATGGGGTTCAATTATCGTTC 7 163 0 AAAGGGTTCA 0.881857 -346 CGCCATTCTAGGAAAGGGTGCAAAAAAATGGG 7 178 0 GGAGGGTGCA 0.95403 -331 GGTGCGGAACAAACAGGGTGCAAAAAAAAATC 7 274 1 AAAGGGTGCA 0.9934 -235 TCGAAATCTGGGTGAATTAAATTAAC 7 493 0 AATGGGTGAA 0.948443 -16 *** ******* Masking position 9 Map Score: 25.2376 Number of sites scoring better than the average of aligned sites = 419 Number in coding regions = 291 Number in noncoding regions = 128 Number of orfs with sites within 600 bp upstream = 94 Fraction of orfs with sites within 600 bp upstream = 0.015098 Motif number 2 CTGTGCGATATTCTTTGGTAAACGTAAAGAACAGGCAA 1 57 0 TTCTTTTGTA 0.767571 -544 AACGAGTCTACTTTTTTATCACGTCAAAATTTACTTGT 1 224 0 CTTTTTTTCA 0.797834 -377 ATGAACATGATTTTTTGCTACAGTTGTAATAAAGTCTT 1 539 1 TTTTTTTTTA 0.920812 -62 TAATAAAGTCTTTTTTATCCAAAGCTTATGAAACCCAA 1 565 1 TTTTTTCGCA 0.87603 -36 GCAGCAATGATTTTTCTATAATCTTCTAAAGTGAAGCA 2 283 1 TTTTTCTTTA 0.891384 -50 TGGTATTGTCTTTTTTTTTTTTTTCCTACATGATCGTC 3 52 1 TTTTTTTTCA 0.957323 -549 ATCTGCCGTACTTTTCATTTACTTCTTATGTGCTCGTT 3 135 0 CTTTTCTTCA 0.735817 -466 TGCTCACCTTTTTTTTTTGCTCATCGAAAATTGTTATA 3 327 1 TTTTTTGTCA 0.81404 -274 ATCCGGCTCGTTCTTCCGTCGGCGTGAATATGCGAGAA 3 569 0 TTCTTCTGTA 0.699763 -32 TAGAGAAAATTTTTTTCGTTAAGGCAAACGCATCAGCG 4 341 1 TTTTTTTGCA 0.973126 -260 TAAAAGCCAGTTTTTCTCCTCTTTCTTAGTCTTGGCTG 4 462 1 TTTTTCCTCA 0.755471 -139 GTATATCGACTTTTTCAATTTGCGCAGACGAGGATTTT 5 254 0 TTTTTCTGCA 0.962344 -347 ATACTAAAAGTTTTTTATTGCAAGTAAAGGGATATTTC 5 527 1 TTTTTTTGTA 0.94942 -74 ATATTTCAAATTTTTATTTCAAAGTTTATTTATATACA 5 558 1 TTTTTATGTA 0.751868 -43 TTTATCTAAATGTTTCATTTCCGGCGCA 6 1 0 TGTTTCTGCA 0.873231 -600 CAAAGTGTATTGTTTTCGTAACTTTAGATTTTATCTAA 6 30 0 TGTTTTTTTA 0.758115 -571 TGAAAGACTCTTTTTTTTGGCTGTCAGAAGCTTTCATC 6 433 1 TTTTTTGTCA 0.81404 -168 TGTTTTCCTTGTGTCTTATAATTTTTGA 6 583 0 TGTTTTTTCA 0.858079 -18 TTGTTATTTTTTTTTTTGTAAAAGTTGATTTATGGGGT 7 120 0 TTTTTTTGTA 0.949421 -389 CTATCCCATATTTTTTGATGTATGTGAAGGAAAGCAAT 7 233 0 TTTTTTTGTA 0.949421 -276 TTTAATTGGATTTTTACTTTTCATTACATTAGCGATCA 7 374 1 TTTTTATTTA 0.652425 -135 TTGACGCTCCTTTTTTAATGATCGCTAATGTAATGAAA 7 392 0 TTTTTTTGCA 0.973126 -117 ****** * ** * Masking position 5 Map Score: 12.6159 Number of sites scoring better than the average of aligned sites = 3385 Number in coding regions = 1225 Number in noncoding regions = 2160 Number of orfs with sites within 600 bp upstream = 1330 Fraction of orfs with sites within 600 bp upstream = 0.21362 Motif number 3 GTCTTTTTTGCCTTTATTTCGGGTTTACAG 1 190 1 CCTTTATTTC 0.840963 -411 GAATGATACACCCATATTTTCAACAAAATC 1 330 0 CCCATATTTT 0.979692 -271 TGTTTTTGCACCCATATTTGTAATTCTAAA 2 195 1 CCCATATTTG 0.970108 -138 AACATTTTCGCCGATATTTTTGCTCACCTT 3 307 1 CCGATATTTT 0.955365 -294 GGTAGAGGTCCCGATATATCCCTTCACTGC 4 270 1 CCGATATATC 0.825025 -331 GGATGTACCGCGCATATTTCTTAGTTAAGC 5 372 1 CGCATATTTC 0.899572 -229 GTAAAATGCACCCATATCTCATTTTGCCTT 6 178 1 CCCATATCTC 0.940303 -423 TCTCATTTTGCCTTTATTTCGGGTGTATAA 6 194 1 CCTTTATTTC 0.840963 -407 TTTTCCTGGACCGATATTTGAGTTTTACGT 6 320 1 CCGATATTTG 0.935028 -281 ATAATTGAACCCCATTTTTTTGCACCCTTT 7 168 1 CCCATTTTTT 0.836972 -341 ACCCCGCTATCCCATATTTTTTGATGTATG 7 247 0 CCCATATTTT 0.979692 -262 CTACCTATGTCCTAGATTTTTTTTTGCACC 7 290 0 CCTAGATTTT 0.811338 -219 ATTTAATTCACCCAGATTTCGA 7 497 1 CCCAGATTTC 0.966654 -12 ********** Masking position 7 Map Score: 8.92503 Number of sites scoring better than the average of aligned sites = 805 Number in coding regions = 648 Number in noncoding regions = 157 Number of orfs with sites within 600 bp upstream = 118 Fraction of orfs with sites within 600 bp upstream = 0.0189528 Motif number 4 AATTTTGACAGTTTTCTGTGCGATATTCTTTGG 1 77 0 GTTTTTGCGA 0.975164 -524 CTAACTGGAAGTTTACTATGCAAACAGGATGAT 1 127 1 GTTTATGCAA 0.981396 -474 GCCACAGTTAGTGTTCTTGGCAATTGCTGCAAA 3 245 0 GTGTTTGCAA 0.921909 -356 CCAAGATCTTGTTTTGTACGCAGTTGCTCTGGG 4 68 0 GTTTTTGCAG 0.92191 -533 ACGTTTTTTGTTTTTTTATGCAAGACCGTCTAA 4 136 1 TTTTTTGCAA 0.939478 -465 TCCTAGCGTAGTTTAATGAGCAAGGTACATCAA 4 393 1 GTTTATGCAA 0.981396 -208 TTCTCTAGTTGTTTTATATGAGAGTCAGCCAAG 4 492 0 GTTTTTGAGA 0.755724 -109 GATCCCTCAAGTTTATTAGGCAACTACAGTATG 5 71 1 GTTTATGCAA 0.981397 -530 ATACTAAAAGTTTTTTATTGCAAGTAAAGGGAT 5 527 1 TTTTTAGCAA 0.793868 -74 CTAGATCATAGTTTACACTGCGAACGGGATAGT 6 132 1 GTTTAAGCGA 0.891283 -469 AGCGTCAATTTTTTACTTGGCAAATGTGTAATG 7 422 1 TTTTATGCAA 0.928914 -87 ***** * **** Masking position 4 Map Score: 5.37732 Number of sites scoring better than the average of aligned sites = 415 Number in coding regions = 292 Number in noncoding regions = 123 Number of orfs with sites within 600 bp upstream = 98 Fraction of orfs with sites within 600 bp upstream = 0.0157404 Motif number 5 CAATGATGCTAGTGGGTATTGATTTTGTTGAAAATA 1 310 1 AGGATGTTTT 0.992101 -291 ATGTTGTCCAAGAAAGGAGGGATTTTGTTCATCAGA 1 441 0 AGGAGGTTTT 0.990488 -160 CACCCCGGCTAGTGGGCATTGTTTTTGCACCCATAT 2 176 1 AGGATGTTTT 0.992099 -157 TCATCGAACCAGGCAGCAATGATTTTTCTATAATCT 2 271 1 AGGATGTTTT 0.992102 -62 GATAATTATTAGCTGGTATTGTCTTTTTTTTTTTTT 3 39 1 AGGATGCTTT 0.978691 -562 TGGCTTTGTAAGCAGGAACGGCTTTTTCCGATAGAA 4 98 1 AGGAGGTTTT 0.990488 -503 ** * * ** **** Masking position 8 Map Score: 2.75523 Number of sites scoring better than the average of aligned sites = 78 Number in coding regions = 53 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 21 Fraction of orfs with sites within 600 bp upstream = 0.00337295 Motif number 6 CACACAACGCAATGAATTTTGACAGTTTTCTGTGCGATA 1 85 0 AGATTGATTT 0.707042 -516 TGTAGAATGATAGGTTGCTTGCTAATTCTATTATGGCAC 1 360 0 TGTTTGATTT 0.970816 -241 ATACTCTAAATTCGGTTATTGCAAGGTATCATTAATTTG 1 475 1 TGTTTGAGTT 0.961399 -126 AAAAATCATGTTCATTTTTTGCGACTTATATATTTAGTG 1 515 0 TATTTGATTT 0.836504 -86 CATTTTTCTTGAAGATTGTTGTCATTTGTGAAATCATTT 2 14 0 GGTTTGATTT 0.920183 -319 CTTGTATTTCGTTATTAATCGATAATTATTAGCTGGTAT 3 19 1 GATTCGATTT 0.657951 -582 AAAATGTATTTAGGTTGCTTGACGGGTTTGCAGCAATTG 3 219 1 TGTTTGGGTT 0.932575 -382 ACCTTTTTTTTTTGCTCATCGAAAATTGTTATAGCGGCT 3 332 1 TGTTCGATTT 0.973035 -269 CAGGTGCAATTATGGTATTCGTTGAGTGTCTATGTTAAA 4 183 0 TGTTCGGGTT 0.937516 -418 TCAGAGATGTTCAGTAAGTCGTGGCGTATAGATCCCCTT 5 23 0 TGATCGGGTT 0.722533 -578 GCATTTCGGCTGCGTTACTTGAAACGTATATCGACTTTT 5 278 0 TGTTTGAGTT 0.961399 -323 TTAATTTGTCATAGTTCTTTGCAGCTTTTAATTCTCTGA 6 79 0 AGTTTGGTTT 0.885357 -522 ATTAAGAAGTTTGGCTTTTCGCCAATTCTTTGAGATGAG 6 365 0 TGTTCGATTT 0.973035 -236 TTTATATTAAAAGATTCGTCGCAACTTATATAAGGTGGC 6 503 1 AATTCGATTT 0.698815 -98 TTTAGGGATTATTGTTATTAGTTATTTTTAAGCGAGTGG 7 11 1 AGTTAGATTT 0.661786 -498 TCAATTATCGTTCGAGATTTGTTATTTTTTTTTTTGTAA 7 137 0 TGGTTGATTT 0.829132 -372 * * * *** * ** * Masking position 9 Map Score: 2.93513 Number of sites scoring better than the average of aligned sites = 995 Number in coding regions = 722 Number in noncoding regions = 273 Number of orfs with sites within 600 bp upstream = 219 Fraction of orfs with sites within 600 bp upstream = 0.0351751 Motif number 7 ACTATCGTTTAGAATGTAGAATGATAGGTTG 1 382 0 AGAATGAGAA 0.980199 -219 TCATCAGAAAAGAATTCAGAAAAGCAAGGAA 1 418 0 AGAATTAGAA 0.983529 -183 ATTTCCGTTCTGAATTTAGAATTACAAATAT 2 208 0 TGAATTAGAA 0.9697 -125 AAACGAGTGCATAATGAAGAAGTACTTCAGA 5 460 0 ATAATGAGAA 0.884504 -141 AGCTTTTGTTAGAATTAAGAAGTTTGGCTTT 6 386 0 AGAATTAGAA 0.983529 -215 TTATAATTTTTGAATTGAGAACGTTCATCAG 6 565 0 TGAATTAGAA 0.9697 -36 ****** **** Masking position 5 Map Score: 1.8006 Number of sites scoring better than the average of aligned sites = 327 Number in coding regions = 252 Number in noncoding regions = 75 Number of orfs with sites within 600 bp upstream = 60 Fraction of orfs with sites within 600 bp upstream = 0.00963701 Motif number 8 GCAATTACGAATAAATGTACAATAATCATCC 1 153 0 ATAATGTACA 0.977343 -448 GATTTTATATATAGATATACATTTTCATTTT 2 47 0 ATAATATACA 0.964829 -286 TAAAATCGTCATATATATACAGAATACATGT 2 71 1 ATAATATACA 0.964829 -262 TATATACAGAATACATGTATAGAATTATTAT 2 84 1 ATAATGTATA 0.848373 -249 TCTTGCGATGATTAATCTACAGCGATGGATA 3 450 1 ATTATCTACA 0.875003 -151 TTCAAAGTTTATTTATATACATCGATAAATA 5 575 1 ATTATATACA 0.922684 -26 CATCTTTGACATAGATGTACAGAATTTGATC 6 467 1 ATAATGTACA 0.977343 -134 *** ******* Masking position 5 Map Score: 1.22739 Number of sites scoring better than the average of aligned sites = 548 Number in coding regions = 169 Number in noncoding regions = 379 Number of orfs with sites within 600 bp upstream = 220 Fraction of orfs with sites within 600 bp upstream = 0.0353357 Motif number 9 ACTTTATTACAACTGTAGCAAAAAATCATG 1 544 0 AACTGTAGCA 0.983535 -57 TAATCTTCTAAAGTGAAGCATGACGACCAT 2 301 1 AAGTGAAGCA 0.968966 -32 CAAGAACACTAACTGTGGCAATCTTGGTGA 3 259 1 AACTGTGGCA 0.980207 -342 TCCAAAAGGGAACTGAAGCATGGAAGAGAG 3 519 0 AACTGAAGCA 0.983535 -82 TGCGAGTGTCAAGAGAAGCACAATTATTAT 6 260 1 AAGAGAAGCA 0.885094 -341 GGACTAAGAAGACTGTGGCATTACTACACA 7 319 1 GACTGTGGCA 0.947666 -190 ********** Masking position 2 Map Score: 1.10727 Number of sites scoring better than the average of aligned sites = 131 Number in coding regions = 94 Number in noncoding regions = 37 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 10 CAGGAAAACAAGTAAATTTTGACGTGATAAA 1 217 1 AGTAATTTTG 0.931376 -384 CGTTGGGTTTCATAAGCTTTGGATAAAAAAG 1 574 0 CATAACTTTG 0.940626 -27 CGAGGCTTTACATAATTTTTGTGACGCCTTT 3 91 1 CATAATTTTG 0.905873 -510 GCCATGGAATAATTTTAGAAGAGGGGGA 4 8 1 AATAATTTAG 0.867927 -593 GACCTCTACCAGTAGTCTTTGTTCTTTTGAG 4 249 0 AGTAGCTTTG 0.892905 -352 GAGATGGCTAAATAAGCTTAGGTAGGCAAAA 4 578 1 AATAACTTAG 0.913181 -23 TTCCAAATATAATAAGCTTGGCAAACGGGCA 5 314 0 AATAACTTGG 0.860527 -287 GATGTATATAAATAAACTTTGAAATAAAAAT 5 567 0 AATAACTTTG 0.963476 -34 GTATTGTTTTCGTAACTTTAGATTTTATCTA 6 31 0 CGTAATTTAG 0.772 -570 TTACGAAAACAATACACTTTGAGGGAAAGAT 6 47 1 AATACCTTTG 0.846322 -554 CCAACGAATCAGTAGCTTTTGTTAGAATTAA 6 399 0 AGTAGTTTTG 0.838946 -202 CCTTGTGTCTTATAATTTTTGAATTGAGAAC 6 574 0 TATAATTTTG 0.722218 -27 ***** ***** Masking position 4 Map Score: 1.55294 Number of sites scoring better than the average of aligned sites = 724 Number in coding regions = 529 Number in noncoding regions = 195 Number of orfs with sites within 600 bp upstream = 147 Fraction of orfs with sites within 600 bp upstream = 0.0236107 Motif number 11 CCGACGGAAGAACGAGCCGGATCAAT 3 585 1 AACGAGCCGG 0.943357 -16 ACGTGTTTCTAAGAAGCAGGTCCCCCTCTT 4 29 0 AAGAAGCAGG 0.969626 -572 AGCCAAGACTAAGAAAGAGGAGAAAAACTG 4 469 0 AAGAAAGAGG 0.953056 -132 ATGGCCAATGAACAAGGAGGATATTTTTTC 5 133 1 AACAAGGAGG 0.988304 -468 CATAGTATGACAGAAGGAGGTTATTTCAAA 5 196 0 CAGAAGGAGG 0.93241 -405 ATCTAGGGTCAACAAAGCGGTTAATTTGTC 6 108 0 AACAAAGCGG 0.949249 -493 CGGGGTGCGGAACAAACAGGGTGCAAAAAA 7 271 1 AACAAACAGG 0.953056 -238 AATCCAATTAAACGAGGAAGCGGTAAAATA 7 356 0 AACGAGGAAG 0.842356 -153 ********** Masking position 5 Map Score: 1.0498 Number of sites scoring better than the average of aligned sites = 484 Number in coding regions = 377 Number in noncoding regions = 107 Number of orfs with sites within 600 bp upstream = 98 Fraction of orfs with sites within 600 bp upstream = 0.0157404 Motif number 12 AACCCGAAATAAAGGCAAAAAAGACCTGGG 1 185 0 AAAGGCAAAA 0.96233 -416 TCCTGCTTACAAAGCCAAGATCTTGTTTTG 4 85 0 AAAGCCAAGA 0.976042 -516 TTTTTTTCGTTAAGGCAAACGCATCAGCGT 4 350 1 TAAGGCAAAC 0.900175 -251 TATATGAGAGTCAGCCAAGACTAAGAAAGA 4 481 0 TCAGCCAAGA 0.934982 -120 CACCCGAAATAAAGGCAAAATGAGATATGG 6 189 0 AAAGGCAAAA 0.96233 -412 GAATTGGCGAAAAGCCAAACTTCTTAATTC 6 376 1 AAAGCCAAAC 0.959243 -225 AAAGCTTCTGACAGCCAAAAAAAAGAGTCT 6 437 0 ACAGCCAAAA 0.959243 -164 ATGGGGTATTTAAGCCAAGAACTATTTGAA 7 97 0 TAAGCCAAGA 0.962114 -412 ********** Masking position 7 Map Score: 4.35643 Number of sites scoring better than the average of aligned sites = 716 Number in coding regions = 493 Number in noncoding regions = 223 Number of orfs with sites within 600 bp upstream = 188 Fraction of orfs with sites within 600 bp upstream = 0.030196 Motif number 13 ********** No masking Map Score: 1.10016e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 AAGTTTACTATGCAAACAGGATGATTATTG 1 135 1 TGCAAACAGG 0.882754 -466 GGCTCAATGATGCTAGTGGGTATTGATTTT 1 306 1 TGCTAGTGGG 0.960897 -295 CGTACACCCCGGCTAGTGGGCATTGTTTTT 2 172 1 GGCTAGTGGG 0.974986 -161 TCTTAAACTGCAAAGGGGATCTATACGC 5 9 1 TGCAAAGGGG 0.950369 -592 TAATAAGCTTGGCAAACGGGCATTTCGGCT 5 306 0 GGCAAACGGG 0.990736 -295 TAGTTTACACTGCGAACGGGATAGTTGCAA 6 140 1 TGCGAACGGG 0.968125 -461 AAAAAATATGGGATAGCGGGGTGCGGAACA 7 255 1 GGATAGCGGG 0.899896 -254 TTTTTTACTTGGCAAATGTGTAATGTAGCG 7 430 1 GGCAAATGTG 0.852555 -79 ********** Masking position 5 Map Score: 0.493414 Number of sites scoring better than the average of aligned sites = 441 Number in coding regions = 332 Number in noncoding regions = 109 Number of orfs with sites within 600 bp upstream = 111 Fraction of orfs with sites within 600 bp upstream = 0.0178285 Motif number 15 CAAAATTTACTTGTTTTCCTGTAAACCCGA 1 208 0 TTGTTTTCCT 0.969723 -393 TACTGTTTCCTTGCTTTTCTGAATTCTTTT 1 412 1 TTGCTTTTCT 0.903342 -189 GTCTTTTTTTTTTTTTTCCTACATGATCGT 3 59 1 TTTTTTTCCT 0.902023 -542 GCCGATATTTTTGCTCACCTTTTTTTTTTG 3 316 1 TTGCTCACCT 0.775677 -285 TTGAAGTCGTTTGCTCTCTTCCATGCTTCA 3 506 1 TTGCTCTCTT 0.912895 -95 AGAACGTTTTTTGTTTTTTTATGCAAGACC 4 133 1 TTGTTTTTTT 0.804119 -468 CCAGTAGTCTTTGTTCTTTTGAGTATTGTT 4 242 0 TTGTTCTTTT 0.850112 -359 TAAAAGCCAGTTTTTCTCCTCTTTCTTAGT 4 462 1 TTTTTCTCCT 0.927112 -139 TCAAAGTGTATTGTTTTCGTAACTTTAGAT 6 39 0 TTGTTTTCGT 0.823126 -562 ACCATTCAAATTTTTCTCCTATTATACACC 6 215 0 TTTTTCTCCT 0.927112 -386 GTAATAATAATTGTGCTTCTCTTGACACTC 6 263 0 TTGTGCTTCT 0.734991 -338 GATTTGTTATTTTTTTTTTTGTAAAAGTTG 7 131 0 TTTTTTTTTT 0.541284 -378 AGCCCTTAGATTGCTTTCCTTCACATACAT 7 224 1 TTGCTTTCCT 0.959215 -285 ********** Masking position 2 Map Score: 4.92881 Number of sites scoring better than the average of aligned sites = 3292 Number in coding regions = 2066 Number in noncoding regions = 1226 Number of orfs with sites within 600 bp upstream = 978 Fraction of orfs with sites within 600 bp upstream = 0.157083