AlignACE version 2.2 July 7, 1998 AlignACE -jFUN.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YAL042W 300 bp YAL042W FUN9 1-1248 Function unknown now #2 YAL036C_YAL035W 326 bp YAL036C FUN11 1-1110 Function unknown now YAL035W FUN12 1-3009 97 kDa protein #3 YAL034C 600 bp YAL034C FUN19 1-1392 Function unknown now #4 YAL032C 300 bp YAL032C FUN20 1-1140 Function unknown now #5 YAL031C 300 bp YAL031C FUN21 1-2283 FUN21 #6 YAL022C 415 bp YAL022C FUN26 1-1554 predicted membrane protein #7 YAL019W 303 bp YAL019W FUN30 1-3396 Shows homology to SNF2 transcriptional regulator #8 YAL017W 600 bp YAL017W FUN31 1-4071 Serine\/threonine kinase #9 YAL008W 300 bp YAL008W FUN14 1-597 #10 YNR002C 487 bp YNR002C FUN34 1-849 Putative transmembrane protein Motif number 1 TGGTTCTTTTTACTCTTTTTCGCCATCTTTC 2 306 0 TTTATTTTTC 0.765269 -21 CCTGACTTTGTTTTGTTTTGTTCTTGCTTAGCG 3 86 0 TTTTTTTTTC 0.979615 -515 ACTCTGGTTTTTCTATCTTGTTGTCTTTAATTG 3 122 0 TTCTTTTTTG 0.794326 -479 AAGTGCTCGTTTTTTTCTTCTTCCATTCAAACC 3 204 0 TTTTTTTTTC 0.979615 -397 TAGATATGTATTCTTTTTTTTTTCCAGGGACAT 4 64 0 TTCTTTTTTT 0.957442 -237 ACTCATACTATTTTTTAATATTTAATCTTTTAC 4 142 1 TTTTTATTTT 0.914883 -159 TTATACTTTTTTTTCTCATCTTTTTTTTCTCTC 6 113 1 TTTTTATTTT 0.914883 -303 TTCGTCCTGTTTCTTTCTTACTTAAGTATCTTT 6 174 1 TTCTTTTCTT 0.81448 -242 TTAAGTATCTTTTTATAATATTTAAGAGAGCCA 6 195 1 TTTTTATTTT 0.914883 -221 AAGTCAATTTTTTTTTCTTTTTCGGGAAATTAA 6 310 0 TTTTTTTTTC 0.979615 -106 ATAGCGTATTTTCTCTCTTTTTCTTGTTTACGT 7 271 0 TTCTTTTTTC 0.963742 -33 AAGTGCAGTTTTTTGTATTATTTTCCTATTATC 8 286 1 TTTTTTTTTT 0.976005 -315 TATCCTCTTCTTTTCCTTTGTTTCAGGCGTCGT 8 315 1 TTTTCTTTTT 0.811787 -286 CATCTCCCTCTTTTGTTTTTTTTCACCTTTGTT 8 496 1 TTTTTTTTTT 0.976005 -105 TCACCTTTGTTTTTCTGTTTCTTCTATTTTTGT 8 518 1 TTTTTTTCTT 0.888113 -83 TTTCTTCTATTTTTGTTTTGTTTTGTTTTGTTT 8 535 1 TTTTTTTTTT 0.976005 -66 TTTTGTTTTGTTTTGTTTTGTTCTCTCCCTAAT 8 550 1 TTTTTTTTTC 0.979615 -51 TACTTCTTTGATGTTTACCTATATGC 8 585 0 TTCTTATTTT 0.856011 -16 ACACCTATTATTTTAAGTTCTTCCTTCTTGCCC 9 275 0 TTTTATTTTC 0.774686 -26 GCCTTTTATTTTTTTCTGTGATTGAA 10 472 0 TTTTTTTTTC 0.979615 -16 **** * ** *** Masking position 9 Map Score: 25.3002 Number of sites scoring better than the average of aligned sites = 7725 Number in coding regions = 1349 Number in noncoding regions = 6376 Number of orfs with sites within 600 bp upstream = 1843 Fraction of orfs with sites within 600 bp upstream = 0.296017 Motif number 2 CAACTCTACGCTTGCACCTACTGCATCTAGCTTCAAAC 2 50 1 CTTGCTACCT 0.974116 -277 GCTTCAAACACTTCCTATCATTGCGCCCTCATCACACC 2 79 1 CTTCCCACCC 0.988713 -248 CTTATCTGATGTTCCTGATTGCCCTTCTTATCCCCTCA 2 267 0 GTTCCTTCCT 0.938417 -60 TTTTTTTCTTCTTCCATTCAAACCTGCTTAAAAACCTC 3 190 0 CTTCCCACCT 0.996059 -411 ACTGTTGGTACATCCGTGCACCTCCGCTAG 3 581 1 CATCCCACCT 0.966971 -20 TTTGGTTGAGGTTGCTGATACGTCCTCTCGGCTCAGAG 4 272 0 GTTGCTACCT 0.928892 -29 TATTATGCGTCTTCCTGCTGTTTCAACCATTGATTGCA 5 177 0 CTTCCTGCCC 0.95924 -124 CAACCTTCAGCTTCCAATCACTCCTTTTATCATTGTTC 5 245 0 CTTCCCACTT 0.947743 -56 ATTTTAAGTTCTTCCTTCTTGCCCCTCTAGCGTTATGC 9 261 0 CTTCCTTCCT 0.977728 -40 GGAAGGTCAGCTTTCCTGTATTGCGTCTCTATCTACTT 10 69 0 CTTTCTACCT 0.93242 -419 GCTGACCTTCCTTCCAATCACCACGGCTGAAATGCTTT 10 96 1 CTTCCCACCT 0.996059 -392 GGATGGAGCCGTTCCAGCCGCGTCCGCTCTTAAGCGTC 10 148 0 GTTCCCGCCT 0.974178 -340 ***** ** * ** Masking position 3 Map Score: 8.56524 Number of sites scoring better than the average of aligned sites = 454 Number in coding regions = 351 Number in noncoding regions = 103 Number of orfs with sites within 600 bp upstream = 94 Fraction of orfs with sites within 600 bp upstream = 0.015098 Motif number 3 TTGATCTAAAAGTGAAAAGTTGCCATATTTC 1 129 0 AGTGAAAATT 0.976382 -172 GGGCTTAAAGCTTGAAAAATTTTTTCACATC 2 188 0 CTTGAAAATT 0.923716 -139 ACATCAGATAAGTGAAAGATGGCGAAAAAGA 2 293 1 AGTGAAAGTG 0.928933 -34 TTAATCTGATAGTGAAAAGTAAAATATTTTT 3 49 1 AGTGAAAATA 0.919948 -552 GCTTAGCGCTCTTGAAAAATATTTTACTTTT 3 63 0 CTTGAAAATA 0.770959 -538 ATGCTTCTTTAGTGAATAATGTTCACTAAAA 3 551 1 AGTGAATATG 0.784637 -50 AAATCAAATTCGTGAAGAATTACAATAATAC 4 181 0 CGTGAAGATT 0.959268 -120 TTAGTTAAACATTGAAAATTTGCGCCAAAGA 5 85 0 ATTGAAAATT 0.922379 -216 AAAAGTATAACGTGAAGGCTTTATGGGAAGT 6 92 0 CGTGAAGGTT 0.922414 -324 AATCCTACAAAGTGAAAAATTATGAAAAATT 7 117 0 AGTGAAAATT 0.976382 -187 TTACCAATTGAGTGAAAGTTTCCGTTCGTCA 8 467 1 AGTGAAAGTT 0.954275 -134 GCTGTTGTGTCGTGAAAATTTTACAAATCCG 9 140 1 CGTGAAAATT 0.976812 -161 TTTTTCTGTGATTGAAGATTGTTTTTGATTG 10 457 0 ATTGAAGATG 0.806233 -31 ******** ** Masking position 6 Map Score: 8.59949 Number of sites scoring better than the average of aligned sites = 696 Number in coding regions = 435 Number in noncoding regions = 261 Number of orfs with sites within 600 bp upstream = 256 Fraction of orfs with sites within 600 bp upstream = 0.0411179 Motif number 4 AATGTCATCTGCAGAGATGGAACAATTGTT 1 19 0 GCAGAGATGG 0.93666 -282 AAACACTTCACCAGCCATGGATGCATGCCT 3 317 0 CCAGCCATGG 0.984673 -284 AGGTGCAGGCGCCGCCATGGGTGAGCCTGA 3 413 1 GCCGCCATGG 0.997879 -188 TCGGCTCAGAGCTGCCATGTGTCAATAACC 4 253 0 GCTGCCATGT 0.921256 -48 GGGAGTAGATGACGACATGGACAATGAATA 5 39 1 GACGACATGG 0.967278 -262 ATATTTATTACCCGCCATGGAATAAAGCAC 8 138 0 CCCGCCATGG 0.994963 -463 TCCGATACCAGCCGACATGGCAATAATAGT 10 206 1 GCCGACATGG 0.995631 -282 ********** Masking position 7 Map Score: 6.24409 Number of sites scoring better than the average of aligned sites = 166 Number in coding regions = 143 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 5 ACGAGGGCCCGTTTTTTTCATCGATGAGCT 2 151 0 GTTTTTTTCA 0.832503 -176 CGACTTGTTTCTTTGTTGCACTAACT 3 7 1 GTTTCTTTGT 0.882944 -594 CTGACTTTGTTTTGTTTTGTTCTTGCTTAG 3 88 0 TTTGTTTTGT 0.901805 -513 GTAAGTGCTCGTTTTTTTCTTCTTCCATTC 3 209 0 GTTTTTTTCT 0.963619 -392 ATGTATTCTTTTTTTTTTCCAGGGACATAA 4 62 0 TTTTTTTTCC 0.835697 -239 CACGTTATACTTTTTTTTCTCATCTTTTTT 6 109 1 TTTTTTTTCT 0.969923 -307 TTTTCTCATCTTTTTTTTCTCTCTCTCTCT 6 123 1 TTTTTTTTCT 0.969923 -293 TTTTCGTCCTGTTTCTTTCTTACTTAAGTA 6 172 1 GTTTCTTTCT 0.918024 -244 TTAAGTCAATTTTTTTTTCTTTTTCGGGAA 6 315 0 TTTTTTTTCT 0.969923 -101 CTATAGCGTATTTTCTCTCTTTTTCTTGTT 7 276 0 TTTTCTCTCT 0.852177 -28 CCCTCTTTTGTTTTTTTTCACCTTTGTTTT 8 501 1 TTTTTTTTCA 0.858186 -100 TTTCACCTTTGTTTTTCTGTTTCTTCTATT 8 516 1 GTTTTTCTGT 0.882944 -85 TTCTTCTATTTTTGTTTTGTTTTGTTTTGT 8 536 1 TTTGTTTTGT 0.901805 -65 TTTGTTTTGTTTTGTTTTGTTCTCTCCCTA 8 551 1 TTTGTTTTGT 0.901805 -50 GCCTTTTATTTTTTTCTGTGATTGAAGAT 10 469 0 TTTTTTCTGT 0.901805 -19 ********** Masking position 6 Map Score: 12.4456 Number of sites scoring better than the average of aligned sites = 2865 Number in coding regions = 941 Number in noncoding regions = 1924 Number of orfs with sites within 600 bp upstream = 1291 Fraction of orfs with sites within 600 bp upstream = 0.207356 Motif number 6 TGGTTAAATCGTGGCAAGAAGCATATAACTA 1 63 0 GTGCAAGAAG 0.871513 -238 GAACTTTGAGGGGATAAGAAGGGCAATCAGG 2 261 1 GGATAAGAAG 0.812044 -66 AGCAGGTTTGAATGGAAGAAGAAAAAAACGA 3 200 1 AAGGAAGAAG 0.790547 -401 TGCACCTGTGGGTGAAGGAAGAAAGACGATG 3 389 0 GGGAAGGAAG 0.981606 -212 CTAAAAAGTTGATGAAAGAAGTTCAAATTAT 4 220 1 GAGAAAGAAG 0.964954 -81 GAGCATAAGGGTCAAAGGGAGTAGATGACGA 5 23 1 GTAAAGGGAG 0.780777 -278 AATGAACAATGATAAAAGGAGTGATTGGAAG 5 242 1 GAAAAAGGAG 0.889311 -59 GTACAGAGAGGAGGGAGGGAGTGGGATGAAA 6 20 0 GAGGAGGGAG 0.95712 -396 ATATAGATGTGGAAAAGGAAGTTTCAAATCA 8 15 0 GGAAAGGAAG 0.954967 -586 CCTGAAACAAAGGAAAAGAAGAGGATAATAG 8 311 0 AGAAAAGAAG 0.724747 -290 CCTCTTATTCGAAGGAAGAAGCCCTCCAACT 9 34 0 GAGGAAGAAG 0.967565 -267 TAACGCTAGAGGGGCAAGAAGGAAGAACTTA 9 264 1 GGGCAAGAAG 0.967379 -37 ATCCTAAATCGGCGGAGGGAGAACTCCGATA 10 182 1 GGGGAGGGAG 0.976987 -306 ** ******** Masking position 6 Map Score: 6.57412 Number of sites scoring better than the average of aligned sites = 1980 Number in coding regions = 1544 Number in noncoding regions = 436 Number of orfs with sites within 600 bp upstream = 372 Fraction of orfs with sites within 600 bp upstream = 0.0597494 Motif number 7 AAGCCCATTGAAAGCAAGAGATCTTGCACTA 2 213 1 AAAGCAGAGA 0.969718 -114 AGATGGCGAAAAAGAGTAAAAAGAACCA 2 309 1 AAAGAGAAAA 0.819935 -18 CTTGGTAAGAAAAGAGTAAGAGGGTTTGGTG 3 247 1 AAAGAGAAGA 0.967274 -354 AGAGAGAGAGAGAGAGAGAGAAAAAAAAGAT 6 130 0 AGAGAGGAGA 0.938081 -286 AAGATACGCAAAAGAGAGAGAGAGAGAGAGA 6 142 0 AAAGAGGAGA 0.987722 -274 AGGCAGATCCAAAGCGCAAGTGATGGAATGT 7 42 0 AAAGCGAAGT 0.802715 -262 TAAACAAGAAAAAGAGAGAAAATACGCTATA 7 274 1 AAAGAGGAAA 0.92534 -30 GCCATGGAATAAAGCACGTGACTCAATAATA 8 124 0 AAAGCAGTGA 0.802715 -477 CGCCTGAAACAAAGGAAAAGAAGAGGATAAT 8 313 0 AAAGGAAAGA 0.76966 -288 AAAAAAAACAAAAGAGGGAGATGACGAACGG 8 488 0 AAAGAGGAGA 0.987722 -113 CAAAATATATAAAGCAGGAGAACTGTCCTAC 10 381 1 AAAGCAGAGA 0.969718 -107 ****** **** Masking position 3 Map Score: 6.03501 Number of sites scoring better than the average of aligned sites = 1080 Number in coding regions = 652 Number in noncoding regions = 428 Number of orfs with sites within 600 bp upstream = 330 Fraction of orfs with sites within 600 bp upstream = 0.0530035 Motif number 8 AGAAAAACCAGAGTGGTTGCTGTGGTAGTACG 3 141 1 GAGGGTTGTG 0.982496 -460 AAAAGAGTAAGAGGGTTTGGTGGGTGATATAT 3 256 1 GAGGTTTGTG 0.956408 -345 CCTTGTCTTTTCGCAGTTGGTGGCATGAAAAT 3 288 0 TCGAGTTGTG 0.97847 -313 ATTTGGTTGAGGTTGCTGATACGTCCTC 4 283 0 TTGGGTTGTG 0.984011 -18 GTATGCTTTCTTGCGTTTGATGATAACGTGTC 6 382 0 TTGGTTTGTG 0.96009 -34 TGCTCTATATTCGAGTTTGTTGCTACTGGTGG 7 215 1 TCGGTTTGTG 0.981885 -89 CTAGGTTTTCTAGCACTTGTTGGAAAACTTAA 9 182 0 TAGACTTGTG 0.896146 -119 CTAGAAAACCTAGGGGTTGTTGAAATTGGTTA 9 201 1 TAGGGTTGTG 0.991367 -100 GTTAAATCCGTCGAAGTTGCTGATCATTTCCA 10 299 0 TCGAGTTGTG 0.97847 -189 *** ***** ** Masking position 7 Map Score: 7.19409 Number of sites scoring better than the average of aligned sites = 297 Number in coding regions = 233 Number in noncoding regions = 64 Number of orfs with sites within 600 bp upstream = 62 Fraction of orfs with sites within 600 bp upstream = 0.00995824 Motif number 9 TATCATTGCGCCCTCATCACACCGTAATATCCCATCTTAAAAGT 2 94 1 CCCCTCCACA 0.997992 -233 AAAAAACGGGCCCTCGTCGCTTGTGATGTGAAAAAATTTTTCAA 2 164 1 CCCCTCCAAA 0.996846 -163 CCCACTCCCTCCCTCCTCTCTGTACACTACCTCATTATAAAATT 6 26 1 CCCCTCCACA 0.997992 -390 GGCTGCGTTACCCCCGTCGCCGCGAAATTTTTCATAATTTTTCA 7 92 1 CCCCTCCACA 0.997992 -212 AGATCATGAGCCCATCTCGCAATGCAACACGTAACTTAAATCAG 7 153 1 CCCTTCCAAA 0.990724 -151 TTCTTGACTACCCCTATCTCACACTAGTACGTAATTCAATGTAT 10 13 1 CCCTTCCAAA 0.990724 -475 *** * ** * * ** Masking position 16 Map Score: 2.73072 Number of sites scoring better than the average of aligned sites = 31 Number in coding regions = 14 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 10 ATATTACGGTGTGATGAGGGCGCAATGATA 2 94 0 GTGATGAGGG 0.889526 -233 CACATCACAAGCGACGAGGGCCCGTTTTTT 2 164 0 GCGACGAGGG 0.989547 -163 GGGTGAGCCTGAGACAGGGTCAACACATTA 3 431 1 GAGACAGGGT 0.869543 -170 GTAGTGTACAGAGAGGAGGGAGGGAGTGGG 6 26 0 GAGAGGAGGG 0.978651 -390 AAATTTCGCGGCGACGGGGGTAACGCAGCC 7 92 0 GCGACGGGGG 0.994911 -212 GTGTTGCATTGCGAGATGGGCTCATGATCT 7 153 0 GCGAGATGGG 0.959387 -151 ACAGCATAACGCTAGAGGGGCAAGAAGGAA 9 258 1 GCTAGAGGGG 0.932278 -43 GTACTAGTGTGAGATAGGGGTAGTCAAGAA 10 13 0 GAGATAGGGG 0.963625 -475 ********** Masking position 4 Map Score: 2.54503 Number of sites scoring better than the average of aligned sites = 248 Number in coding regions = 150 Number in noncoding regions = 98 Number of orfs with sites within 600 bp upstream = 95 Fraction of orfs with sites within 600 bp upstream = 0.0152586 Motif number 11 CAAGCGACGAGGGCCCGTTTTTTTCATCGA 2 157 0 GGGCCCGTTT 0.990738 -170 AGTACGTTGGGGGCTCGTTTGTCGAGGTTT 3 167 1 GGGCTCGTTT 0.995806 -434 ACTCCAGTAAGTGCTCGTTTTTTTCTTCTT 3 215 0 GTGCTCGTTT 0.983544 -386 AGCCAATGGCAAGCTCGTTTACCAGTTCAA 3 508 0 AAGCTCGTTT 0.919638 -93 CGGTGAGATTGGGATCGTTTCAATTTTATA 6 61 0 GGGATCGTTT 0.978496 -355 ********** Masking position 8 Map Score: 1.73458 Number of sites scoring better than the average of aligned sites = 54 Number in coding regions = 39 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 12 GATGTCTATTGTGTCTAGCTATGTGTG 1 284 0 CTATTGTTCA 0.973368 -17 ACGCTTGCACCTACTGCATCTAGCTTCAAACA 2 57 1 CTACTGCTCA 0.939016 -270 ATGCGTCTTCCTGCTGTTTCAACCATTGATTG 5 179 0 CTGCTGTTCA 0.989242 -122 TAATATACCGCTGTTGTGACGATATCCGGGGT 8 388 0 CTGTTGTACA 0.955001 -213 AATTGGTAAGCTACTGTTTCTAATTTCTGACT 8 444 0 CTACTGTTCA 0.983043 -157 AGAAGTGAAGCTGTTGTGTCGTGAAAATTTTA 9 131 1 CTGTTGTTCT 0.912196 -170 TAGCGTTATGCTGTTGTATGTATAATAAGATG 9 240 0 CTGTTGTTGA 0.905615 -61 CTGGTAGCATCTACTGTCACTATTATTGCCAT 10 222 0 CTACTGTACA 0.955001 -266 ******* ** * Masking position 5 Map Score: 1.80038 Number of sites scoring better than the average of aligned sites = 275 Number in coding regions = 215 Number in noncoding regions = 60 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 13 TGGTTCTTTTTACTCTTTTTC 2 316 0 GGTTCTTTTT 0.911802 -11 CTTTTTTTTCTCATCTTTTTTTTCTCTCTC 6 118 1 TCATCTTTTT 0.859868 -298 TCTCTTTTGCGTATCTTTTTCGTCCTGTTT 6 156 1 GTATCTTTTT 0.968057 -260 TTTTCGTCCTGTTTCTTTCTTACTTAAGTA 6 172 1 GTTTCTTTCT 0.823979 -244 TCTTACTTAAGTATCTTTTTATAATATTTA 6 189 1 GTATCTTTTT 0.968057 -227 TAATACGACGGGATCTTTCTGGTTTTGTGA 8 99 0 GGATCTTTCT 0.941146 -502 AGGCGTCGTTGCACCTTTTTGCTATACAAA 8 339 1 GCACCTTTTT 0.935997 -262 TAGTTATTTTGCATCTTTTTGGTAAGTCAG 8 420 1 GCATCTTTTT 0.984275 -181 GTTAAACAAGGCATCTTATTATACATACAA 9 229 1 GCATCTTATT 0.907979 -72 ********** Masking position 6 Map Score: 3.73467 Number of sites scoring better than the average of aligned sites = 665 Number in coding regions = 444 Number in noncoding regions = 221 Number of orfs with sites within 600 bp upstream = 183 Fraction of orfs with sites within 600 bp upstream = 0.0293929 Motif number 14 CGATACAAGCCTGTTATAGCC 7 2 1 GATACAAGCC 0.964874 -302 GTTGTGGTTAGCGACCTGCCCCTTGCCAAA 8 223 0 GCGACCTGCC 0.980684 -378 GGAGAACTCCGATACCAGCCGACATGGCAA 10 199 1 GATACCAGCC 0.993072 -289 GACAGTAGATGCTACCAGCCCCGCAATAAT 10 236 1 GCTACCAGCC 0.993579 -252 TACGCACTCCGAGAACAGCCGTGATCATCT 10 342 1 GAGAACAGCC 0.967376 -146 ********** Masking position 4 Map Score: 1.31763 Number of sites scoring better than the average of aligned sites = 32 Number in coding regions = 26 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 15 ATACGACTTGAACATCAGAACGGCGATTTT 1 168 1 AACATCAGAA 0.827761 -133 AAGCCCATTGAAAGCAAGAGATCTTGCACT 2 213 1 AAAGCAAGAG 0.767644 -114 TCAAGAGCGCTAAGCAAGAACAAAACAAAA 3 79 1 TAAGCAAGAA 0.896293 -522 ACAAGATAGAAAAACCAGAGTGGTTGCTGT 3 134 1 AAAACCAGAG 0.884953 -467 CTAAAATCAGAAGCAAATTGAG 4 3 1 AAAATCAGAA 0.943042 -298 TCCCTGGAAAAAAAAAAGAATACATATCTA 4 67 1 AAAAAAAGAA 0.74108 -234 AAAAGATACTTAAGTAAGAAAGAAACAGGA 6 178 0 TAAGTAAGAA 0.843743 -238 TATTAATGCCAAAAACAGAATTAATTTCCC 6 290 1 AAAAACAGAA 0.858382 -126 GTTATCATCAAACGCAAGAAAGCATACCAG 6 387 1 AACGCAAGAA 0.767644 -29 ACACGTAACTTAAATCAGTACTGGCGTGTG 7 179 1 TAAATCAGTA 0.553048 -125 GTAAGGAACGTAAACAAGAAAAAGAGAGAA 7 264 1 TAAACAAGAA 0.90478 -40 CATGTGTCACAAAACCAGAAAGATCCCGTC 8 93 1 AAAACCAGAA 0.963637 -508 ATCTTTTTGGTAAGTCAGAAATTAGAAACA 8 432 1 TAAGTCAGAA 0.919581 -169 TCCGACCTAAATCAGAATGAAAGAGTT 9 8 1 TAAATCAGAA 0.92632 -293 ********** Masking position 7 Map Score: 4.82006 Number of sites scoring better than the average of aligned sites = 2166 Number in coding regions = 1570 Number in noncoding regions = 596 Number of orfs with sites within 600 bp upstream = 501 Fraction of orfs with sites within 600 bp upstream = 0.080469