AlignACE version 2.2 July 7, 1998 AlignACE -jHEM.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YDL205C 600 bp YDL205C HEM3 1-984 phorphobilinogen deaminase (uroporphyrinogen synthase), the third step in heme biosynthesis #2 YDR044W 600 bp YDR044W HEM13 1-987 Coproporphyrinogen III oxidase #3 YDR047W 600 bp YDR047W HEM12 1-1089 uroporphyrinogen decarboxylase #4 YDR232W 541 bp YDR232W hem1 1-1647 5-aminolevulinate synthase #5 YER014W 321 bp YER014W HEM14 1-1620 protoporphyrinogen oxidase #6 YGL040C 600 bp YGL040C HEM2 1-1029 delta-aminolevulinate dehydratase (porphobilinogen synthase) #7 YOR176W 600 bp YOR176W HEM15 1-1182 ferrochelatase (protoheme ferrolyase) #8 YOR278W 600 bp YOR278W HEM4 1-828 uroporphyrinogen III synthase Motif number 1 TTTCGTAGCCAAAAAAAAGACCTTCATTGC 1 285 0 AAAAAAAAGA 0.825049 -316 ATCAAACATAAAAAAAGAAAGAAAATGAAA 1 350 1 AAAAAAGAAA 0.959042 -251 AAAAAAGAAAGAAAATGAAAAAGTAAAGGA 1 360 1 GAAAATGAAA 0.798592 -241 GAACAATAGAAAAAAAGAAAAGCGAAGAAA 1 543 1 AAAAAAGAAA 0.959042 -58 GGTTCACAGCGTAAAAAAAAGTTACTATAG 2 91 1 GTAAAAAAAA 0.925941 -510 CGCTGAAAGAGTAAAAGAAATCTTTCACAG 2 223 1 GTAAAAGAAA 0.90123 -378 ACAATAGGTGGAAAAAAAAAGGAAAATCCG 2 462 0 GAAAAAAAAA 0.97453 -139 ATAAAAGCTTAACAAAGAAAGACAATAGGT 2 483 0 AACAAAGAAA 0.839441 -118 GATATGCTCAAAAAAAGAAAACCCGGAGAA 2 512 0 AAAAAAGAAA 0.959042 -89 CTTCGCTCTTAAAAGAAAAAACTTCTTTAC 3 106 1 AAAAGAAAAA 0.711089 -495 GGAGAGGAAAGCAAAAAAAAATGAGGCAAG 3 378 1 GCAAAAAAAA 0.793691 -223 GGAAGAACAAAAAAAAAAAAAATAAAGCAA 3 563 1 AAAAAAAAAA 0.969774 -38 AGAGTGGGATAAAAAAAAAAGAAACGCGAG 4 410 0 AAAAAAAAAA 0.969774 -132 TATAGGAAAGAAAAAAGAAAAGAGTGGGAT 4 430 0 AAAAAAGAAA 0.959042 -112 ACTGAAAAAAAAACCTAAGTACT 4 529 0 GAAAAAAAAA 0.97453 -13 GGAGTATTCAAAAAAAGAAATAGTATAATA 5 215 1 AAAAAAGAAA 0.959042 -107 CTAGTTAATTAAAAATAAAATATATGCAAG 6 32 0 AAAAATAAAA 0.820014 -569 GCCAATGTCTGTAAATAAAAACAATATGCT 6 95 1 GTAAATAAAA 0.639689 -506 ACATGAATATATAAAAAAGAAGTGTTACAT 6 180 1 ATAAAAAAGA 0.606459 -421 AATTGTTGCCGAAAAAAAAATTGGAAAAGG 6 340 1 GAAAAAAAAA 0.97453 -261 TGGAAAAGGTGAAAAAAAAATCAAAATACG 6 361 1 GAAAAAAAAA 0.97453 -240 AATCAGCCAAATAAAAAAAAGTTTTACTGC 6 527 1 ATAAAAAAAA 0.912925 -74 TCAACAGCAGGACAAAAAAAGCTAAAAAAG 7 101 1 GACAAAAAAA 0.895212 -500 ACTTTTTTAAAAAAAAAAAATGGCCAGCAT 7 217 0 AAAAAAAAAA 0.969774 -384 AAATTTAGCAGTAAAAAAAAGAACGTTTAA 7 578 1 GTAAAAAAAA 0.925941 -23 AAAAGCTAGGAACAAAAAAAATTGGTCTAC 8 281 0 AACAAAAAAA 0.87751 -320 ********** Masking position 4 Map Score: 38.8576 Number of sites scoring better than the average of aligned sites = 12182 Number in coding regions = 1615 Number in noncoding regions = 10567 Number of orfs with sites within 600 bp upstream = 2257 Fraction of orfs with sites within 600 bp upstream = 0.362512 Motif number 2 TGAAAAAGTAAAAAAATCAAACATAAAAAAAGAAAG 1 335 1 AAAAAAAAAA 0.914534 -266 ATAGAAAAAAAGAAAAGCGAAGAAAATCTAGATAAA 1 548 1 AGAAAAAAAA 0.945156 -53 CACAGCGTAAAAAAAAGTTACTATAGGCACGGTATT 2 95 1 AAAAAAAAAG 0.966793 -506 AGGAAAGCAAAAAAAAATGAGGCAAGAGTTTTAATT 3 382 1 AAAAAAACAG 0.92426 -219 GCTCTCTTCGAGAAAAGGAAGAACAAAAAAAAAAAA 3 547 1 AGAAAAAAAA 0.945156 -54 GAAGAACAAAAAAAAAAAAAATAAAGCAAAGAACAG 3 564 1 AAAAAAAAAG 0.966793 -37 TGGGATAAAAAAAAAAGAAACGCGAGCTGAGAAGGG 4 400 0 AAAAAAACAG 0.92426 -142 TATATAGGAAAGAAAAAAGAAAAGAGTGGGATAAAA 4 426 0 AGAAAAAAAG 0.979118 -116 TTTGGTTGGAAGGAAAACTAATAGAGCTAGTTGTTG 4 475 1 AGGAAAAAAG 0.896656 -67 TAAAGTTGTTAAAAAATTAAATATAGGTCTATAAAA 5 45 0 AAAAAAAAAG 0.966793 -277 GAATTTTTACATGAAAAAAATCACAGAGTAACGCTA 5 91 1 ATGAAAAAAG 0.656987 -231 ATTCAAAAAAAGAAATAGTATAATAGAGAGAACAAT 5 220 1 AGAAATAAAG 0.751513 -102 TTAATTAAAAATAAAATATATGCAAGAATTAGCACC 6 22 0 ATAAAAACAG 0.812683 -579 AAGATCGACGATAAAAATCATCCAAAAAATTGTTGC 6 313 1 ATAAAAACAA 0.614583 -288 AAAAGGTGAAAAAAAAATCAAAATACGGGTAAACGA 6 364 1 AAAAAAAAAC 0.839498 -237 TGATTGGGCAAGAAAATCAAAGACAATAGAGTGGCG 6 496 0 AGAAAAAAAA 0.945156 -105 ATTCATACCTAGAAAATTGACAAAACC 6 584 1 AGAAAAAAAC 0.893887 -17 CAGCAGGACAAAAAAAGCTAAAAAAGAACTCTTCGC 7 105 1 AAAAAAAAAG 0.966793 -496 AAGCAGCATGAGAAAACGAAGGGCAGCAACTCCTTC 7 377 0 AGAAAAAGAG 0.848066 -224 TTCTTAATTAAGAAAAACCATTAAAACTGGATTAGA 8 322 0 AGAAAAAAAA 0.945156 -279 ACTAAAATTCAAAAAACTCACTAGAAAGTTCACTAA 8 528 0 AAAAAAAAAA 0.914534 -73 ****** * * ** Masking position 10 Map Score: 22.1049 Number of sites scoring better than the average of aligned sites = 2796 Number in coding regions = 1067 Number in noncoding regions = 1729 Number of orfs with sites within 600 bp upstream = 1172 Fraction of orfs with sites within 600 bp upstream = 0.188243 Motif number 3 ATTCCCATATAACATTCCTTCTCTCCTTGTCAATTG 1 209 1 AATTCCTTCC 0.968023 -392 AATTGTTTAGAAAGTGCCTTCACACCATTAGCCCCT 2 139 1 AATGCCTTCC 0.992761 -462 CGTTCTTTGAAATTTGGCTTCTGTTCCTGCGACTCG 2 281 0 AATGGCTTCC 0.93583 -320 AGTGTTAGTTTATCCGCCATCTTGGCGCTATCATAC 3 284 1 TACGCCATCC 0.867404 -317 TGCTATAATAAGCTTGCCTGCACGGCTTACCCTACC 4 113 1 AGTGCCTGCC 0.964628 -429 CCGCTCGGAAAGGCCGCCTTCGTCGCTCATTGGTCT 4 147 1 AGCGCCTTCC 0.994595 -395 GTTCTTCCTTTACACGCCTTCCCTTCTCAGCTCGCG 4 380 1 TACGCCTTCC 0.982602 -162 TAGCTCTATTAGTTTTCCTTCCAACCAAACTTATAT 4 468 0 AGTTCCTTCC 0.972274 -74 AACGCCTTTGAACTTGCCTTCGACACTTTGTTGCTT 5 170 1 AATGCCTTCC 0.992761 -152 CATGTGGACGTGTACGCCTTCTTCCCTTCTTTGCCT 6 149 0 TGCGCCTTCC 0.984945 -452 ACCGACCAAAAGTATTCCTTCGCGTCCTCCTTCTTC 7 436 0 AGTTCCTTCC 0.972274 -165 AATTGAAATGAAATCGCCTTTTATACCCTCGCCGCA 8 116 0 AACGCCTTTC 0.919343 -485 ** ******* * Masking position 8 Map Score: 11.5682 Number of sites scoring better than the average of aligned sites = 351 Number in coding regions = 270 Number in noncoding regions = 81 Number of orfs with sites within 600 bp upstream = 65 Fraction of orfs with sites within 600 bp upstream = 0.0104401 Motif number 4 TGCAGTCATCCTTACATTGTCGTTCGTACGGCAGTCCAG 1 145 1 CCTGCTCGTC 0.989506 -456 GTTCGTACGGCAGTCCAGGATTTTTGACCATCTTTACGC 1 166 1 CCGGTTTGAC 0.874135 -435 AACATTCCTTCTCTCCTTGTCAATTGACCCTGGGGAGCG 1 219 1 CCTGCTTGAC 0.988571 -382 GAAGATAAAGCTTGCTTTGCCCATTGTTCTCGTTTCGAA 2 407 1 CCTGCTTGTC 0.994676 -194 TTGTAGTATACGTACGCGGGCAATTGTGGTGACAGTATC 3 200 1 CCGGCTTGTG 0.988455 -401 CATTGGTCTGCGGCCGCGGGCGCTTTTTGGTCATTGTTC 4 174 1 CCGGCTTTTG 0.971826 -368 AATTTTTCATCTTGCCTTGCCCATTGTTCTGATCCATGC 4 239 1 CCTGCTTGTC 0.994676 -303 TGGTATGATGCAAACGTTGTATTTCTAACAACGCATGGA 4 271 0 CCTGATCTAC 0.706824 -271 CGCCTTCTTCCCTTCTTTGCCTCTTGTGCCACTGTTAAT 6 132 0 CCTGCTTGTC 0.994676 -469 TCATATAAGGCTTACGGTGACCATTGAAGATTGGGCATG 7 337 0 CCTGCTTGAG 0.975113 -264 TACTTTTGGTCGGTCAAGGTCACTCTTGGCTTGACACCA 7 458 1 CCGGCTCTTG 0.945666 -143 CACCAAGGAGCGCGCTGTGAAAATTTTTCGCTTTATCTC 8 79 0 CCTGATTTTC 0.91163 -522 CTCTCGAGCAAGGTCTATTTTACCTTTCTGTTT 8 578 0 CCGGCTTTTC 0.986955 -23 * * ** * **** * Masking position 14 Map Score: 13.6896 Number of sites scoring better than the average of aligned sites = 192 Number in coding regions = 150 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 5 ATTAGCCAGAAAGACATCTTTACCCCCGGTG 1 115 0 AAGAATCTTT 0.860005 -486 CGTTTATATAAAGCGTTCCTTTACTTTTTCA 1 375 0 AAGCTTCCTT 0.922753 -226 GCCGCTGTGAAAGATTTCTTTTACTCTTTCA 2 226 0 AAGATTCTTT 0.967846 -375 GGCGAAAGCGTAGCGTTCTTTGAAATTTGGC 2 299 0 TAGCTTCTTT 0.889647 -302 TCCGAAGATAAAGCTTGCTTTGCCCATTGTT 2 404 1 AAGCTGCTTT 0.922768 -197 AGCATATCAAAAGCTTTCTTTTCGCAAATCA 2 534 1 AAGCTTCTTT 0.986968 -67 CTTAAAAGAAAAAACTTCTTTACTTCCATGC 3 113 1 AAAATTCTTT 0.855518 -488 GCTGTCTCTCAACCGTTCTTCCTTTACACGC 4 366 1 AACCTTCTTC 0.874421 -176 GAGTAACGCTAACCTTTCTTTAATTGAAAGC 5 116 1 AACCTTCTTT 0.97785 -206 CAATTGATGTAACACTTCTTTTTTATATATT 6 185 0 AACATTCTTT 0.946068 -416 CATCAATTGGAACCCATCTTTCGGAACGTTT 6 207 1 AACCATCTTT 0.900151 -394 TAAAAGTGCGAAGAGTTCTTTTTTAGCTTTT 7 117 0 AAGATTCTTT 0.967846 -484 TCTTTAAACGTTCTTTTTTTTACTGC 7 585 0 AAACTTCTTT 0.937152 -16 **** ****** Masking position 2 Map Score: 11.1837 Number of sites scoring better than the average of aligned sites = 703 Number in coding regions = 513 Number in noncoding regions = 190 Number of orfs with sites within 600 bp upstream = 140 Fraction of orfs with sites within 600 bp upstream = 0.0224863 Motif number 6 TTAAACTACAAGGGTAGCAGCAGAATGTGTCGGTG 1 35 0 AGTAGCAGAA 0.806636 -566 AGATATTAATACGGGATGAGAAGAACAGAATATTC 1 507 0 AGGATGAGAA 0.943651 -94 TTTTAAACGAGTCGCAGGAACAGAAGCCAAATTTC 2 274 1 GGCAGGAGAA 0.993957 -327 AGCGTTATTGGTGGGAGAACCAGAAAAGGCGAAAG 2 322 0 GGGAGAAGAA 0.92838 -279 CCAAAGCGCTGACGGACGATCCGAAGATAAAGCTT 2 385 1 GGGACGAGAA 0.955159 -216 ACCAATTGCTGGTGCAGCATAGGAATATGTGGCGT 3 18 0 GGCAGCAGAA 0.980953 -583 CTAGTGCGAAGTAGTATGATCCGAAGACACCAATT 3 46 0 GGTATGAGAA 0.915282 -555 GGGGTTTTTGGCGGCAGGAGAGGAAAGCAAAAAAA 3 362 1 GGCAGGAGAA 0.993958 -239 CTGAGATAATGCTTGATGAATTGAAGAACCTATCG 3 497 0 GTGATGAGAA 0.742172 -104 ATATGAAGAAAGAGCAGGAACGGAAATTTTTCATC 4 215 1 AGCAGGAGAA 0.983125 -327 AAACAGCTCAACAGCAGGACAAAAAAAGCTAAAAA 7 94 1 AGCAGGAAAA 0.780047 -507 TGTAGCATGTGTAGGATGCCTTGAAACATCTCCGC 7 285 1 GGGATGCGAA 0.873388 -316 CCTACGAAAAAAAGCAGCATGAGAAAACGAAGGGC 7 389 0 AGCAGCAGAA 0.948021 -212 TGGGATTGAAGAAGGAGGACGCGAAGGAATACTTT 7 429 1 GGGAGGAGAA 0.993958 -172 * ****** *** Masking position 6 Map Score: 10.8396 Number of sites scoring better than the average of aligned sites = 1389 Number in coding regions = 1106 Number in noncoding regions = 283 Number of orfs with sites within 600 bp upstream = 230 Fraction of orfs with sites within 600 bp upstream = 0.0369419 Motif number 7 AAGCTGGAGCGTTATTGGTGGGAGAACCAG 2 334 0 GTTATTGGTG 0.93989 -267 CCATGCGCGCGTTTTTGGCGTACGTAGCAC 3 138 1 GTTTTTGGCG 0.993046 -463 AGGGTTCGGGGTTTTTGGCGGCAGGAGAGG 3 355 1 GTTTTTGGCG 0.993046 -246 TATACAAGCTCTTTTTGGCGTTCTCAATTG 5 302 0 CTTTTTGGCG 0.970364 -20 GTCAATTATAGTTTCTGGTGAGTCAGCCAA 6 70 1 GTTTCTGGTG 0.958634 -531 TAGTTCACTAGTTTTTGGGGTTGGGTTGTG 8 478 1 GTTTTTGGGG 0.981574 -123 ********** Masking position 6 Map Score: 3.92114 Number of sites scoring better than the average of aligned sites = 143 Number in coding regions = 112 Number in noncoding regions = 31 Number of orfs with sites within 600 bp upstream = 29 Fraction of orfs with sites within 600 bp upstream = 0.00465789 Motif number 8 AGCACCGGGGGTAAAGATGTCTTTCTGGCT 1 113 1 GTAAAGATGT 0.922944 -488 GAATTGCTGCGTAAAGATGGTCAAAAATCC 1 183 0 GTAAAGATGG 0.957022 -418 CAATTGACAAGGAGAGAAGGAATGTTATAT 1 215 0 GGAGAGAAGG 0.851179 -386 CGATGAGTAAGCAATGAAGGTCTTTTTTTT 1 275 1 GCAATGAAGG 0.922225 -326 GCGCATGGAAGTAAAGAAGTTTTTTCTTTT 3 116 0 GTAAAGAAGT 0.940384 -485 GTATGATAGCGCCAAGATGGCGGATAAACT 3 290 0 GCCAAGATGG 0.829129 -311 AATTCGAGCGGTAAAGATGAAAATGGCAGA 3 433 0 GTAAAGATGA 0.71319 -168 GTAAAGCATTGTAGTGAAGTCCACAGCAGT 4 43 0 GTAGTGAAGT 0.772201 -499 TTGAGAGACAGCAGAGCAGGGTGCAACACA 4 348 0 GCAGAGCAGG 0.896219 -194 AGAAACGCGAGCTGAGAAGGGAAGGCGTGT 4 391 0 GCTGAGAAGG 0.759963 -151 GGCACAAGAGGCAAAGAAGGGAAGAAGGCG 6 141 1 GCAAAGAAGG 0.975913 -460 ATAGAGTGGCGCATAGATGTTGCTAGCATT 6 477 0 GCATAGATGT 0.699562 -124 CCTCTTTCATGTAAAGCTGTTGAACCTTCC 7 187 0 GTAAAGCTGT 0.77662 -414 AAACAAGAGAGTAATGAAGTGAAGATATGT 8 388 0 GTAATGAAGT 0.821951 -213 ********** Masking position 6 Map Score: 4.17149 Number of sites scoring better than the average of aligned sites = 1558 Number in coding regions = 1222 Number in noncoding regions = 336 Number of orfs with sites within 600 bp upstream = 272 Fraction of orfs with sites within 600 bp upstream = 0.0436878 Motif number 9 TCCCGTATTAATATCTAGAACAATAGAAAAAA 1 526 1 ATACTAGACA 0.933931 -75 AGTGGGTGATATATAGAGAACATGTTGTAGTA 3 176 1 ATAAGAGACA 0.975004 -425 TGTTTCTCGTATATACAGGACAGGGTTCGGGG 3 334 1 ATAACAGACA 0.899433 -267 TATATGGGCAATATATAGGAAAGAAAAAAGAA 4 441 0 ATAATAGAAA 0.925648 -101 AAATAGTATAATAGAGAGAACAATAGAGATAT 5 232 1 ATAAGAGACA 0.975004 -90 CAATTCAAACATATCGAGTAAAGTGCAATTGA 5 277 1 ATACGAGAAA 0.945693 -45 CCAGTAATTCATACCTAGAAAATTGACAAAAC 6 578 1 ATACTAGAAA 0.898616 -23 GCCCTAAGAGATAAAGCGAAAAATTTTCACAG 8 72 1 ATAAGCGAAA 0.945698 -529 ATATGTCTATATAAAGCGCAAATGGCTGGAAG 8 250 1 ATAAGCGAAA 0.945698 -351 TTTACATTGTATACATCGTACATATACTTCAA 8 415 1 ATAATCGACA 0.933931 -186 *** **** *** Masking position 3 Map Score: 4.03377 Number of sites scoring better than the average of aligned sites = 255 Number in coding regions = 129 Number in noncoding regions = 126 Number of orfs with sites within 600 bp upstream = 93 Fraction of orfs with sites within 600 bp upstream = 0.0149374 Motif number 10 TATCACACCGGTACCACCGACACATTCTGC 1 21 1 GTACCACCGA 0.936307 -580 AAAGACATCTTTACCCCCGGTGCTGCCAGG 1 107 0 TTACCCCCGG 0.958877 -494 AAAAGTAGAAGGGCCCGCGGAGCCGCTGTG 2 248 0 GGGCCCGCGG 0.978716 -353 GTCACCACAATTGCCCGCGTACGTATACTA 3 203 0 TTGCCCGCGT 0.944077 -398 AGTTTTAATTTTGCCAGCGAAATGTTCTGC 3 408 1 TTGCCAGCGA 0.965622 -193 TATAGTGGTGGTACCCCCGACGGTGCTATA 4 90 1 GTACCCCCGA 0.966535 -452 TGACCAAAAAGCGCCCGCGGCCGCAGACCA 4 177 0 GCGCCCGCGG 0.978661 -365 CTACAAGCCTGTGTCACCGAATTACTTTAT 6 246 1 GTGTCACCGA 0.81472 -355 CTAACGGCTATTGCCAGCGGAGATGTTTCA 7 306 0 TTGCCAGCGG 0.978175 -295 ********** Masking position 5 Map Score: 3.32536 Number of sites scoring better than the average of aligned sites = 325 Number in coding regions = 241 Number in noncoding regions = 84 Number of orfs with sites within 600 bp upstream = 87 Fraction of orfs with sites within 600 bp upstream = 0.0139737 Motif number 11 TTTTCACTTTAAAAAATTGCTGAAATTTTCG 1 310 0 AAAAAATTGT 0.935699 -291 GGCACTTTCTAAACAATTGAAATTAAAATAC 2 126 0 AAACAATTGA 0.895144 -475 GTATATACGAGAAACATTGAAAAAGATCGTG 3 319 0 GAAACATTGA 0.826765 -282 ACTGCTCGGTAAAGCATTGTAGTGAAGTCCA 4 50 0 AAAGCATTGA 0.917939 -492 TAAAGTTGTTAAAAAATTAAATATAGGTCTA 5 50 0 AAAAAATTAA 0.7374 -272 AAAATCATCCAAAAAATTGTTGCCGAAAAAA 6 326 1 AAAAAATTGT 0.935452 -275 GTTGCCGAAAAAAAAATTGGAAAAGGTGAAA 6 344 1 AAAAAATTGA 0.969826 -257 ACTGTTCAACAAAACATTGAAGATCTTTCAC 7 57 0 AAAACATTGA 0.958132 -544 AAGTAAGTTCAAAGAATTGAAATGAAATCGC 8 135 0 AAAGAATTGA 0.940158 -466 CTAGGAACAAAAAAAATTGGTCTACTTCCAG 8 275 0 AAAAAATTGT 0.935699 -326 ********* * Masking position 6 Map Score: 3.15343 Number of sites scoring better than the average of aligned sites = 881 Number in coding regions = 583 Number in noncoding regions = 298 Number of orfs with sites within 600 bp upstream = 225 Fraction of orfs with sites within 600 bp upstream = 0.0361388 Motif number 12 AGAAACCGATGAGTAAGCAATGAAGGTCTT 1 269 1 GAGTAAGCAA 0.980437 -332 CCGAGCGGTAGGGTAAGCCGTGCAGGCAAG 4 125 0 GGGTAAGCCG 0.953906 -417 GAACGGTTGAGAGACAGCAGAGCAGGGTGC 4 354 0 GAGACAGCAG 0.910581 -188 AAGTGCAATTGAGAACGCCAAAAAGAGCTT 5 297 1 GAGAACGCCA 0.885444 -25 AGTTTCTGGTGAGTCAGCCAATGTCTGTAA 6 79 1 GAGTCAGCCA 0.978267 -522 ATTTATATAAGAGTAAGGCAACCTAATAAA 6 449 1 GAGTAAGGCA 0.929361 -152 GCAATAATATGAGTAAGCAGTAAAACTTTT 6 543 0 GAGTAAGCAG 0.980049 -58 TGAATTACTGGAGTAAGCAATAATATGAGT 6 559 0 GAGTAAGCAA 0.980437 -42 ********** Masking position 7 Map Score: 3.12004 Number of sites scoring better than the average of aligned sites = 185 Number in coding regions = 137 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 13 ACACAGTAAAAACTCCGCAGGAAATGGTTT 2 54 0 AACTCCGCAG 0.98518 -547 ATCTCGCAGGAGCTCAGCAGAAAGTGCCTA 2 188 0 AGCTCAGCAG 0.980624 -413 CGTAACGAGCAGCTCAACAGTTAATATAAA 4 12 0 AGCTCAACAG 0.976695 -530 CATTGTAGTGAAGTCCACAGCAGTGCGTAA 4 37 0 AAGTCCACAG 0.913662 -505 CACTATATCAAACTCCACTGCTCGGTAAAG 4 67 0 AACTCCACTG 0.959916 -475 AAAGCAAAACAGCTCAACAGCAGGACAAAA 7 88 1 AGCTCAACAG 0.976695 -513 GCCTTGAAACATCTCCGCTGGCAATAGCCG 7 302 1 ATCTCCGCTG 0.919648 -299 ********** Masking position 1 Map Score: 2.43729 Number of sites scoring better than the average of aligned sites = 181 Number in coding regions = 138 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 14 TAATACGGGATGAGAAGAACAGAATATTCAAA 1 504 0 TGAGAAACAG 0.919505 -97 TGTTGGGAAAAACAATACGCCTAAT 2 4 1 TGGGAAACAA 0.9708 -597 GCGTTATTGGTGGGAGAACCAGAAAAGGCGAA 2 324 0 TGGGAGACAG 0.854126 -277 ACGAGAACAATGGGCAAAGCAAGCTTTATCTT 2 408 0 TGGGCAACAA 0.984431 -193 TTTCTTTTTTTGAGCATATCAAAAGCTTTCTT 2 522 1 TGAGCAACAA 0.958732 -79 ATCAGAACAATGGGCAAGGCAAGATGAAAAAT 4 240 0 TGGGCAGCAA 0.988331 -302 AAACGCGAGCTGAGAAGGGAAGGCGTGTAAAG 4 387 0 TGAGAAGAAG 0.791547 -155 AAAGTGCAATTGAGAACGCCAAAAAGAGCTTG 5 296 1 TGAGAAGCAA 0.942495 -26 TTTGGCTGATTGGGCAAGAAAATCAAAGACAA 6 506 0 TGGGCAGAAA 0.954586 -95 CATTGAAGATTGGGCATGTCTAACGGCTATTG 7 323 0 TGGGCAGCTA 0.914454 -278 ATGGGCAGAAAAGTTACCTCATG 8 2 1 TGGGCAAAAG 0.936095 -599 ****** * *** Masking position 1 Map Score: 5.28268 Number of sites scoring better than the average of aligned sites = 693 Number in coding regions = 561 Number in noncoding regions = 132 Number of orfs with sites within 600 bp upstream = 117 Fraction of orfs with sites within 600 bp upstream = 0.0187922 Motif number 15 TGTTGAACGGTTCACAGCGTAAAAAAAAGT 2 83 1 TTCACAGCGT 0.967888 -518 AAAGAAATCTTTCACAGCGGCTCCGCGGGC 2 236 1 TTCACAGCGG 0.987982 -365 CACCCACTCTTTCGCAGTGCTACGTACGCC 3 154 0 TTCGCAGTGC 0.965334 -447 CTTAAGAGGATTAACAGTGGCACAAGAGGC 6 123 1 TTAACAGTGG 0.889969 -478 TTGAAGATCTTTCACATTGCGCGTCGAAAC 7 42 0 TTCACATTGC 0.921763 -559 GCGAAAAATTTTCACAGCGCGCTCCTTGGT 8 87 1 TTCACAGCGC 0.991719 -514 ********** Masking position 6 Map Score: 0.286219 Number of sites scoring better than the average of aligned sites = 127 Number in coding regions = 89 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 40 Fraction of orfs with sites within 600 bp upstream = 0.00642467