AlignACE version 2.2 July 7, 1998 AlignACE -jHSP.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YBR072W 600 bp YBR072W HSP26 1-645 heat shock protein 26 #2 YCR021C 313 bp YCR021C HSP30 1-999 Protein induced by heat shock, ethanol treatment, and entry into stationary phase\; located in plasma membrane #3 YDR171W 600 bp YDR171W HSP42 1-1128 Similar to HSP26\; expression is regulated by stress conditions #4 YDR258C 387 bp YDR258C HSP78 1-2436 Mitochondrial heat shock protein 78 kDa #5 YFL014W 300 bp YFL014W HSP12 1-330 12 kDa heat shock protein #6 YJL159W 600 bp YJL159W HSP150 1-933 Heat shock protein, secretory glycoprotein #7 YLL026W 467 bp YLL026W hsp104 1-2727 104 kDa heat shock protein #8 YLR259C 600 bp YLR259C HSP60 1-1719 mitochondrial chaperonin, homolog of E. coli groEL protein #9 YOR020C 600 bp YOR020C HSP10 1-321 10 kDa mitochondrial heat shock protein #10 YPL240C 600 bp YPL240C hsp82 1-2130 82 kDa heat shock protein\; homolog of mammalian Hsp90 Motif number 1 CCATCGATCTTTCTAGAAATCAAGCAATGC 1 245 0 TTCTAGAAAT 0.970599 -356 TTCTAGAACATTCTGGAAAATAACAAATTT 4 139 0 TTCTGGAAAA 0.980954 -249 GAAAGAACACTTCTAGAACATTCTGGAAAA 4 149 0 TTCTAGAACA 0.938293 -239 TCTGCACCATTTTTAGAAAAAAAGAATCTA 7 17 1 TTTTAGAAAA 0.860019 -451 TTCTAGAAAATTCTGGAAAAATATATATCT 7 164 0 TTCTGGAAAA 0.980954 -304 TTAATAACCCTTCTAGAAAATTCTGGAAAA 7 174 0 TTCTAGAAAA 0.986322 -294 CCATTTGGTTTTCTGGAAAATTCCACGAGG 8 394 0 TTCTGGAAAA 0.980954 -207 TCCTTCAAGATTCTAGAAATTTCTATCATT 9 444 0 TTCTAGAAAT 0.970599 -157 TTCCACGGCGTTCTAGAAAAAAAAGAAAAA 10 364 0 TTCTAGAAAA 0.986322 -237 TGTATTAGAGTTCAAGAAATCATACCTGAT 10 534 1 TTCAAGAAAT 0.822878 -67 ********** Masking position 7 Map Score: 12.7945 Number of sites scoring better than the average of aligned sites = 316 Number in coding regions = 213 Number in noncoding regions = 103 Number of orfs with sites within 600 bp upstream = 86 Fraction of orfs with sites within 600 bp upstream = 0.013813 Motif number 2 TTTGTTTAGTTTGTTTGTTTGCTTTTTTGGATACCTGT 1 568 0 TTTTTTTTTT 0.961574 -33 TCTCACAGACTTATATATGATTTTTTTAGTGTGATACA 2 108 0 TTTTGTTTTA 0.724816 -206 TGAGTTAATATTTGTTGTTGTGTTGTATTGCAGAATGT 2 202 0 TTTTTTTTAT 0.911611 -112 ACTTGTTGTTTTGTTTTTGTAATTATAAATAATAATAA 2 241 0 TTTTGTTTAA 0.520536 -73 TTCGGCTTGGTATGATCTTAATTTGTGTGGGATATGGA 3 570 0 TATTTTTTGT 0.643531 -31 GTCTGTTACATTAATTATTAAAATTTATATGACCTATA 4 74 0 TTTTTATTAT 0.813172 -314 CTTTTCATGCTTACATATGCATATATATGTATATATAT 4 295 0 TTTTGATTAT 0.742039 -93 ACTTCCTCAATTGCGTTTGATCTTATTTAATCTCTCTC 5 193 1 TTTTGTTTTT 0.944317 -108 ATTTAGTTTTTTTTGTTTTGAGTTGTTTGTTTGAGATT 5 267 0 TTTTTTTTTT 0.961574 -34 CCAACTCAGCCTAATTTTTCATTTCTTTACCAGATCAG 6 297 1 CTTTTTTTTT 0.859389 -304 GGAATATGAGTTTCTTATTGATATTTTTTTGAGCTTTG 6 541 0 TTTTTATTTT 0.913552 -60 AAAAAAGAATCTACCTATTCACTTATTTATTCATTTAC 7 34 1 CTTTTTTTTT 0.859389 -434 ATTCATTTACTTATTTATTTACATATTTATCATACATA 7 62 1 TTTTTATTTT 0.913551 -406 CGATGGAGGGTTCAATGTTAATATGTATGATAAATATG 7 83 0 TTTTTATTAT 0.813172 -385 TTTACTGTGATATAATTTGCAGTTCTTTGAGATGGGCC 7 262 0 TATTGTTTTT 0.782554 -206 GTGTAGTTGATTTCTTTTTTCTTTGTTATTGCTGATTC 7 417 0 TTTTTTTTTA 0.79537 -51 TCCTTTATGTTACTATGTTGCTTTCTTTTAATCTATGT 8 57 0 TATTTTTTTT 0.84153 -544 ATCATCAAAATTTTCTCTTCCTTTATGTTACTATGTTG 8 75 0 TTTTTTTTGT 0.894815 -526 TAAAATAAAATTCCTTGTTACATTTTTTTAGCCAGCTG 9 80 0 TTTTTTTTTT 0.961574 -521 GCAGCGATGGTAGCATTTTTTATTGTATAAATTGTGGC 9 171 1 TATTTTTTAT 0.686389 -430 ATAACTTAGCTTGCGTGTGCGTATTTGTATTCTTCGTG 10 118 1 TTTTGATTGT 0.708851 -483 GCAGAACTTTTTGAATTTTTCTTTTTTTTCTAGAACGC 10 349 1 TTTTTTTTTT 0.961574 -252 AAGGGATAAGCTGCATATTTATATGTTTTAGGGGGTGG 10 458 0 CTTTTATTTT 0.72075 -143 CTTTGCGTGTTTGTTTGTGCTTTTGTTTATAGGACTCT 10 571 0 TTTTGTTTTT 0.944317 -30 ** * ** ** *** Masking position 8 Map Score: 13.0787 Number of sites scoring better than the average of aligned sites = 6239 Number in coding regions = 1487 Number in noncoding regions = 4752 Number of orfs with sites within 600 bp upstream = 1721 Fraction of orfs with sites within 600 bp upstream = 0.276421 Motif number 3 ATCGATGGTTATTCCCTCCCCCTTATGCGTCCAAAA 1 267 1 ACCCCCCTAT 0.827801 -334 ATTCACCTTTCATTCTACTCTCTTATACTAATAAAA 1 499 1 CTCCCTCTAT 0.889463 -102 CGATAAAGATATATCAGATCTCTATTAAAACAGGTA 1 539 1 ATCACTCTTT 0.898836 -62 TCATCGAAAACTTTCCTCTCCCTAATTGGCCAAAGT 2 15 1 CTCCCCCTAT 0.973776 -299 ACGTAGTGTACTGTCCAAACTCTCTTCCAAATTTTT 3 66 1 CTCACTCTTT 0.896947 -535 CTAGAGATCAATATCTGCTCCCTATTTATTGTA 4 8 0 ATCCCCCTTT 0.992956 -380 AAAAAAAAGTCCGTGCACCCCCTATTCAAACGCGAT 4 189 0 CTGCCCCTTT 0.970929 -199 TTTGAGGTTCCGGTCGTCCCCCTCTTGATCTGAAAG 5 103 1 CTCCCCCTTT 0.992811 -198 AGTAGAACGCAATTCACCGTCCTATTTATACGTTTT 5 160 0 ATCCTCCTTT 0.955914 -141 TGCCACGCTCATTTCTCCCCCCTTCTGCCCAATTAG 6 96 1 ATCCCCCTCT 0.956962 -505 GCACATACACATTTCCCACCTCTATTGGAAGGGGCC 6 146 1 ATCACTCTTT 0.898838 -455 ATCAATAAGAAACTCATATTCCTTTTCTAACCCTAG 6 557 1 ATCATCCTTT 0.863132 -44 AAACCTTCTGCACCATTTTTAGAAAAAAA 7 4 1 CTCCCCATTT 0.87951 -464 CAGTTCTTTGAGATGGGCCCCCTGTTGAAAATTGAA 7 245 0 ATGCCCCTTT 0.971472 -223 TAATGCATCCAAATGTTCCTCCTGTTATACTATTGG 8 134 1 ATGCTCCTTT 0.839847 -467 CCAGCCAGTTATGTCTCATCCCTATTCCACTGTTTT 8 251 1 ATCACCCTTT 0.976191 -350 * ** * **** ** Masking position 13 Map Score: 13.5452 Number of sites scoring better than the average of aligned sites = 939 Number in coding regions = 679 Number in noncoding regions = 260 Number of orfs with sites within 600 bp upstream = 242 Fraction of orfs with sites within 600 bp upstream = 0.0388693 Motif number 4 GGTTATGTGTCTTCATTTGGTAATCACTGGG 1 69 1 CTTCATTTGT 0.909342 -532 CTGTGAGAGTCTTCAATTATTTAGCGTAACA 2 138 1 CTTCAATTAT 0.885669 -176 TTGAAGTACTCTTCAATTCAGGCGCGGCCTA 3 34 0 CTTCAATTCG 0.973946 -567 TTGAAGAGTACTTCAATACGTAGTGTACTGT 3 49 1 CTTCAATACT 0.883564 -552 ATATGACATACTTCAATTCAGCTTTCCCTAT 3 242 1 CTTCAATTCG 0.973946 -359 CGTTCTACTTCCTCAATTGCGTTTGATCTTA 5 187 1 CCTCAATTGG 0.940682 -114 TGTCGTTAGACTTCAAGTGTTCCTTTTATAT 6 479 0 CTTCAAGTGT 0.883897 -122 TGTAATCTTGCCTCAATTCCTTCATAATTCG 7 351 1 CCTCAATTCT 0.973962 -117 CAATAAACAGCTTCAATTGCTCGTAACACCA 8 300 0 CTTCAATTGT 0.975861 -301 CAGCTTATCCCTTCAATTCTTAACATCTGTG 10 483 1 CTTCAATTCT 0.983532 -118 TCTGTGACCTCCTCATTTCTTCCCGCTGTAT 10 508 1 CCTCATTTCT 0.902734 -93 ********* * Masking position 5 Map Score: 7.72403 Number of sites scoring better than the average of aligned sites = 482 Number in coding regions = 403 Number in noncoding regions = 79 Number of orfs with sites within 600 bp upstream = 71 Fraction of orfs with sites within 600 bp upstream = 0.0114038 Motif number 5 CTGGGATGTTACTGGGGCAGCAGCAACTCCG 1 95 1 ACGGGGCAGC 0.957736 -506 TTGGACGCATAAGGGGGAGGGAATAACCATC 1 270 0 AAGGGGAGGG 0.971554 -331 ACTCTTCAATTCAGGCGCGGCCTAAATTGTA 3 27 0 TCGGCGCGGC 0.956475 -574 AGGGGCGAATACAGGGGCGGCCTTGGCGGCA 3 399 1 ACGGGGCGGC 0.996534 -202 CCTTGGCGGCAGGGGGGAGGCCTCTGTGAAG 3 419 1 AGGGGGAGGC 0.987828 -182 AAACGTTCCATAAGGGGCCGCGATTTTTTTG 7 214 1 TAGGGGCCGC 0.935395 -254 ATCTTGCAGAAAAGCGGTGGCAACTGAAAGG 8 19 1 AAGCGGTGGC 0.879554 -582 TGACATATACAGATGGGCGGCTATAAAGTAA 8 352 0 AGTGGGCGGC 0.975589 -249 CAGAAAACCAAATGGGGAGGGTGACTTTAAT 8 409 1 AAGGGGAGGG 0.971554 -192 CACGAATGAGAATTGGGCGGCTAATGAGAGA 9 381 0 AATGGGCGGC 0.979778 -220 TTAGTGGCGCGGGACTTTTTATT 10 3 1 AGGGCGCGGG 0.955472 -598 TTATATGTTTTAGGGGGTGGCGGAAGGACCT 10 447 0 TAGGGGTGGC 0.960651 -154 ** ******** Masking position 7 Map Score: 9.81643 Number of sites scoring better than the average of aligned sites = 374 Number in coding regions = 241 Number in noncoding regions = 133 Number of orfs with sites within 600 bp upstream = 121 Fraction of orfs with sites within 600 bp upstream = 0.0194346 Motif number 6 TAACAACGGTTCTTTTTCACCCTTATTCCTAA 1 422 1 TTTTTTACCC 0.841246 -179 GTTAGAGATCTGTTTTTAATCCATTCACCTTT 1 477 1 TTTTTTATCC 0.90514 -124 TTGTTTAGTTTGTTTGTTTGCTTTTTTGGATA 1 573 0 TTTTGTTGCT 0.707367 -28 TCTCTTGCTATTTTATTGTTCTTCTTAAAATG 3 149 0 TTTATTTTCT 0.914081 -452 GCTGTCATCGTTTTTTTGATCCCGGCAGGAAC 3 467 1 TTTTTTATCC 0.90514 -134 TGATAAAATTTGTTATTTTCCAGAATGTTCTA 4 134 1 TTTATTTCCA 0.594478 -254 TCATTTGTACTATTAGTTTTCCTGATCTGGTA 6 324 0 TTTAGTTTCC 0.829725 -277 CTTATTGATATTTTTTTGAGCTTTGAGGTAAA 6 534 0 TTTTTTAGCT 0.737589 -67 GGGGCCGCGATTTTTTTGTTCAATTTTCAACA 7 227 1 TTTTTTTTCA 0.816354 -241 TTTTAATCTATGTTTTTTTCCCTTTCAGTTGC 8 38 0 TTTTTTTCCC 0.934557 -563 GCATTAGGTATATTATTCATCTTCTTTATCAT 8 108 0 TTTATTATCT 0.797888 -493 AGAAAATACCTTTTATTTTTCTTTGCTTTCTT 9 15 1 TTTATTTTCT 0.914081 -586 GCGTCGATTATCTTATTATGCCACTCATAATA 9 211 1 TTTATTTGCC 0.865884 -390 TCTTTTTTTTCTGTAGATTCAA 9 589 0 TTTTTTTTCT 0.947134 -12 GTGGCGCGGGACTTTTTATTCCTCGTGGCAAA 10 14 1 ATTTTTTTCC 0.647858 -587 TCTAACCATCTCTTATTCTCCTCTTAGTAGCC 10 50 0 TTTATTTCCT 0.855246 -551 TGCGTGTGCGTATTTGTATTCTTCGTGGTTAC 10 129 1 TTTTGTTTCT 0.851128 -472 TTTGAATTTTTCTTTTTTTTCTAGAACGCCGT 10 358 1 TTTTTTTTCT 0.947134 -243 ACCATGCGCGTGTTTTTCTTCCACGGCGTTCT 10 380 0 TTTTTTTTCC 0.962567 -221 * ***** **** Masking position 7 Map Score: 10.1033 Number of sites scoring better than the average of aligned sites = 4456 Number in coding regions = 1725 Number in noncoding regions = 2731 Number of orfs with sites within 600 bp upstream = 1766 Fraction of orfs with sites within 600 bp upstream = 0.283649 Motif number 7 TTAAAACAGGTATCCAAAAAAGCAAACAAACAAAC 1 563 1 TATAAAAGAA 0.817693 -38 TTTTTGTAATTATAAATAATAATAATTGAGTTAAT 2 231 0 TATAAAAAAA 0.970637 -83 ATCTTTTGATTACTAAAAACAACAAATTTCAA 2 292 1 TACAAAAAAA 0.828244 -22 GTGAACATTTTAAGAAGAACAATAAAATAGCAAGA 3 144 1 TAAAAAAAAA 0.764905 -457 TTCTTGACCGTATGTATGAGAATAAAAGATAGTTC 3 495 0 TATAGAAAAA 0.952338 -106 TCTAGAACATTCTGGAAAATAACAAATTTTATCAG 4 133 0 TCTAAAAAAA 0.912617 -255 CACAGGGGTTTATTCAAAAAAAAAAGTCCGTGCAC 4 207 0 TATAAAAAAA 0.970638 -181 CTCTCTCTAATATATAGAAAAAAAAACCATCTGAT 5 224 1 TATAAAAAAA 0.970638 -77 TTTCGGAAATTATTAAAGACAAAAAAGCTCATTAA 6 235 1 TATAGAAAAA 0.952339 -366 CTGCACCATTTTTAGAAAAAAAGAATCTACCTATT 7 18 1 TTTAAAAAAA 0.870998 -450 TCAATGTTAATATGTATGATAAATATGTAAATAAA 7 75 0 TATAGAAATA 0.645387 -393 GAAAAATATATATCTACAAGAACAACGAAAGAAAA 7 144 0 TATAAAAAAA 0.970638 -324 CGCTGCTACATATGAACGAAAATAATACAACTATC 9 142 0 TATAGAAAAA 0.952339 -459 CAAGCCACAATTTATACAATAAAAAATGCTACCAT 9 177 0 TTTAAAAAAA 0.870927 -424 ATATATTGAATCTACAGAAAAAAAAGA 9 584 1 TCTAAAAAAA 0.912617 -17 *** * ** ** ** Masking position 9 Map Score: 10.5645 Number of sites scoring better than the average of aligned sites = 738 Number in coding regions = 296 Number in noncoding regions = 442 Number of orfs with sites within 600 bp upstream = 310 Fraction of orfs with sites within 600 bp upstream = 0.0497912 Motif number 8 CAGCAGCAACTCCGTGTGTACCCCTAACTC 1 112 1 TCCGTGTGTA 0.983797 -489 TACCCCTAACTCCGTGTGTACCCCTAAAGA 1 130 1 TCCGTGTGTA 0.983797 -471 CGGAATAGTAACCGTCTTTACATGAACATC 1 189 1 ACCGTCTTTA 0.847183 -412 ATACTTCTTGACCGTATGTATGAGAATAAA 3 504 0 ACCGTATGTA 0.935166 -97 CTAGTTACTCTCCGTCTAGAGTGCTTCTGG 5 41 0 TCCGTCTAGA 0.895549 -260 TTAATGGCTTTCCGTCTGTAGTGATAAGTC 6 266 1 TCCGTCTGTA 0.991427 -335 TACATGAATGTCCGTCTGGATTCTGCTCCG 8 456 0 TCCGTCTGGA 0.98439 -145 TACCTAATCCTACGTATGTACTAAATTAAA 9 290 0 TACGTATGTA 0.811915 -311 ********** Masking position 10 Map Score: 3.51123 Number of sites scoring better than the average of aligned sites = 145 Number in coding regions = 105 Number in noncoding regions = 40 Number of orfs with sites within 600 bp upstream = 38 Fraction of orfs with sites within 600 bp upstream = 0.00610344 Motif number 9 TGATTTCTAGAAAGATCGATGGTTATTCCCTCCC 1 253 1 AAAGATAGTT 0.788075 -348 AATGTAAAAACAAGAAACAAGATTAGAAAGTGAA 2 173 0 CAAGAAAATT 0.976432 -141 CAATACAACACAACAACAAATATTAACTCAATTA 2 210 1 CAACAAAATT 0.815019 -104 TCTCGAGAGCCAAGCATTACCATTCCATCTCTTG 3 174 0 CAAGCAAATT 0.876732 -427 TACATACGGTCAAGAAGTATAATTATACATAACA 3 514 1 CAAGAAAATT 0.976432 -87 GAATAACTCCCAAGAATTACCATTTACGGCCCCT 6 175 0 CAAGAAAATT 0.976432 -426 CAAACACTACCACGATGGAGGGTTCAATGTTAAT 7 99 0 CACGATAGTT 0.870499 -369 CGCTTTTCTGCAAGATTCATAGTT 8 1 0 CAAGATAGTT 0.923728 -600 CTAGTTGTGCAAAGAAGTACAGTTGAAATTCCAG 8 221 1 AAAGAAAGTT 0.916619 -380 CTCCGGGCAAAACGAAGCAAAATTAAAGTCACCC 8 427 0 AACGAAAATT 0.881944 -174 ATGACCTTCACACGAATGAGAATTGGGCGGCTAA 9 388 0 CACGAAAATT 0.958612 -213 GCGAAACTCGAAAGAACCAGAATTGTTCGAACAA 10 317 0 AAAGAAAATT 0.930377 -284 ****** * *** Masking position 9 Map Score: 3.52001 Number of sites scoring better than the average of aligned sites = 662 Number in coding regions = 487 Number in noncoding regions = 175 Number of orfs with sites within 600 bp upstream = 134 Fraction of orfs with sites within 600 bp upstream = 0.0215226 Motif number 10 AAAAAAATCATATATAAGTCTGTGAGAGTCTTCAATTATTT 2 119 1 TATATATGGT 0.985833 -195 GCAACACACCTATATAACTGCTCGAGCGGCTGATAGGGAAA 3 264 0 TATATATGGT 0.985833 -337 TATATATGTATATATATGTGTGTGCGTGAGTCAGTAACTAG 4 271 0 TATATATGGT 0.985833 -117 TATATATACATATATATGCATATGTAAGCATGAAAAGTTTG 4 296 1 TATATACGGT 0.948672 -92 GGTTTTTTTTTCTATATATTAGAGAGAGATTAAATAAGATC 5 211 0 TCTATATGGT 0.95538 -90 TACAATGCCTTATATAATAATCTGGCAGGTTGCATAAGTTT 7 314 0 TATATAAGGT 0.925763 -154 ATATTCTGTATATTTTATGGTACGTGTAGTTGATTTC 7 441 0 TGTATATGGT 0.97525 -27 TCCTTCAATATATATACATGAATGTCCGTCTGGATTCTGCT 8 459 0 TATATATGGT 0.985833 -142 CATTTTTTATTGTATAAATTGTGGCTTGCGTCGATTATCTT 9 184 1 TGTATATGGT 0.97525 -417 ****** * * * * Masking position 6 Map Score: 4.6216 Number of sites scoring better than the average of aligned sites = 208 Number in coding regions = 34 Number in noncoding regions = 174 Number of orfs with sites within 600 bp upstream = 86 Fraction of orfs with sites within 600 bp upstream = 0.013813 Motif number 11 CCAGAACTTTTAAGCGCGTGTTCCAGGCGT 3 344 0 TAAGCGCGTG 0.932735 -257 AACCCTGAAACAAGCGAGTGAAAATCTTTC 4 358 1 CAAGCGAGTG 0.946426 -30 GCCCAATTCTCATTCGTGTGAAGGTCATTA 9 394 1 CATTCGTGTG 0.923259 -207 TATAACTTAGCTTGCGTGTGCGTATTTGTA 10 117 1 CTTGCGTGTG 0.956759 -484 AACCAACGTGCAAGCGTGTGATATATCACA 10 167 1 CAAGCGTGTG 0.985201 -434 CAATATGTGACAAGCGTATGAGTTAATAAT 10 290 0 CAAGCGTATG 0.879589 -311 CTCATAAAACCATGCGCGTGTTTTTCTTCC 10 390 0 CATGCGCGTG 0.649434 -211 ********** Masking position 9 Map Score: 4.19876 Number of sites scoring better than the average of aligned sites = 59 Number in coding regions = 35 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 12 ACATCTAAAACTCGCATATTACTTAATTTTGT 1 353 0 CTCCATATTC 0.944603 -248 GGTTCTTTTTCACCCTTATTCCTAAACATATA 1 429 1 CACCTTATTC 0.972775 -172 TTTTCCCTTGCTCACTTGTTACCCAACCCCAG 3 111 0 CTCCTTGTTC 0.990013 -490 AAGATTTTCACTCGCTTGTTTCAGGGTTCCTG 4 354 0 CTCCTTGTTC 0.990018 -34 ACTGCTTTGCCACGCTCATTTCTCCCCCCTTC 6 89 1 CACCTCATTC 0.916627 -512 TCGTTCCTTTGTCACTTGTTCCTTTTTACCCT 7 379 1 GTCCTTGTTC 0.950157 -89 GTTGTTATTTCTCACTTATTGCACCTCTCGAA 9 347 1 CTCCTTATTC 0.987971 -254 *** ****** * Masking position 9 Map Score: 2.08138 Number of sites scoring better than the average of aligned sites = 66 Number in coding regions = 36 Number in noncoding regions = 30 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 13 AAGCAATGCTTGAAAAAGCACTTTCGTTGGTT 1 222 0 TGAAAACACT 0.974406 -379 ACCGTTGTTATGAAATACCACTCAAGAACGTG 1 400 0 TGAAAACACT 0.974402 -201 GGAATAAGGGTGAAAAAGAACCGTTGTTATGA 1 419 0 TGAAAAAACC 0.856374 -182 ATTTTTTTAGTGTGATACAACTTGTAATGAGG 2 95 0 TGTGAAAACT 0.82831 -219 TGCCATTAGATGAAAGAACACTTCTAGAACAT 4 158 0 TGAAAACACT 0.974406 -230 GTGTTCCGCTTGAGAAAACACTCATTTGTACT 6 345 0 TGAGAACACT 0.983706 -256 GGAATAGGGATGAGACATAACTGGCTGGAATT 8 247 0 TGAGAAAACT 0.968466 -354 GTGCAATAAGTGAGAAATAACAACTTTAGAAC 9 339 0 TGAGAAAACA 0.917702 -262 CTCCGGAATGTGATATATCACACGCTTGCACG 10 173 0 TGATAACACA 0.766815 -428 ***** * **** Masking position 7 Map Score: 2.07266 Number of sites scoring better than the average of aligned sites = 235 Number in coding regions = 166 Number in noncoding regions = 69 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 14 GGTATTCGCACTTAGCGTGCTCGCAACACAA 1 326 1 CTTAGCTGCT 0.968533 -275 AGAAGTCAAACTTTTCATGCTTACATATGCA 4 312 0 CTTTTCTGCT 0.941802 -76 CTGTTCCTAACTTTTCTTTCGTTGTTCTTGT 7 133 1 CTTTTCTTCG 0.85245 -335 GTTTGCGCCCCTTTGCCTTTTACTGTGATAT 7 287 0 CTTTGCTTTT 0.910734 -181 CACAACTAGTCTTGGCGTTCTACTTGATCAT 8 199 0 CTTGGCTTCT 0.94223 -402 TTTTATTTTTCTTTGCTTTCTTTCTCCATTA 9 25 1 CTTTGCTTCT 0.978073 -576 TAAAATATAACTTAGCTTGCGTGTGCGTATT 10 112 1 CTTAGCTGCG 0.945738 -489 ATCTTTGCGTGTTTGTTTGTGCT 10 588 0 CTTTGCTGTT 0.941802 -13 ****** **** Masking position 8 Map Score: 0.429978 Number of sites scoring better than the average of aligned sites = 463 Number in coding regions = 344 Number in noncoding regions = 119 Number of orfs with sites within 600 bp upstream = 102 Fraction of orfs with sites within 600 bp upstream = 0.0163829 Motif number 15 TCTCTTACCTTCTTGGCAATGTGGCACAAAA 1 32 1 TCTTGGCAAG 0.948449 -569 GGAGAAATGAGCGTGGCAAAGCAGTGAGATT 6 83 0 GCGTGGCAAG 0.977532 -518 GAACCCTCCATCGTGGTAGTGTTTGCTGTTC 7 108 1 TCGTGGTAGG 0.984311 -360 TTATGTAAGGTCGTGGTTGCGTCTTCATGCA 8 518 1 TCGTGGTTGG 0.97112 -83 TTTTTATTCCTCGTGGCAAAGAATGGCTACT 10 26 1 TCGTGGCAAG 0.991664 -575 TTTGTATTCTTCGTGGTTACGATATGAACCA 10 141 1 TCGTGGTTAG 0.975939 -460 ********* * Masking position 4 Map Score: 0.371222 Number of sites scoring better than the average of aligned sites = 68 Number in coding regions = 48 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548