AlignACE version 2.2 July 7, 1998 AlignACE -jHXT.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: YDL245C 600 bp YDL245C HXT15 1-1704 Hexose transporter YIL171W 600 bp YIL171W HXT12 1-330 High-affinity hexose transporter YJL219W 600 bp YJL219W HXT9 1-1704 High-affinity hexose transporter Input sequences: #1 YDR342C 600 bp YDR342C HXT7 1-1713 Hexose transporter #2 YDR343C 600 bp YDR343C HXT6 1-1713 Hexose transporter #3 YDR345C 600 bp YDR345C hxt3 1-1704 High-affinity glucose transporter #4 YEL069C 600 bp YEL069C HXT13 1-1695 High-affinity hexose transporter #5 YFL011W 600 bp YFL011W HXT10 1-1641 High-affinity hexose transporter #6 YHR092C 330 bp YHR092C hxt4 1-1683 High-affinity glucose transporter #7 YHR094C 317 bp YHR094C hxt1 1-1713 High-affinity hexose (glucose) transporter #8 YHR096C 600 bp YHR096C HXT5 1-1779 hexose transporter #9 YIL170W 300 bp YIL170W HXT12 1-1374 High-affinity hexose transporter #10 YJL214W 300 bp YJL214W HXT8 1-1710 High-affinity hexose transporter #11 YJR158W 600 bp YJR158W HXT16 1-1704 hexose transporter #12 YMR011W 600 bp YMR011W HXT2 1-1626 high affinity hexose transporter-2 #13 YNL318C 300 bp YNL318C HXT14 1-1623 High-affinity hexose transporter #14 YNR072W 600 bp YNR072W HXT17 1-1695 hexose transporter #15 YOL156W 600 bp YOL156W HXT11 1-1704 Glucose permease Motif number 1 TGTTCCTCCTAAAAAAAAAAAAGATTTCCTACCC 1 58 0 AAAAAAAAAA 0.960719 -543 GAAAGAATGAAAAGGAGGAAAATACAAAATATAC 1 390 1 AAAAGGAAAA 0.896344 -211 AATATACTAGAACTGAAAAAAAAAAAGTATAAAT 1 417 1 AACAAAAAAA 0.948369 -184 CAATAGCTGCAAATGAAGAATAGATTCGAACATT 1 477 0 AAAAAGAAAA 0.954271 -124 ACAAAGAATAAACACAAAAACAAAAAGTTTTTTT 1 562 1 AACAAAAAAA 0.948369 -39 TTTTTGATTAAAATTAAAAAAACTTTTTGTTTTT 1 577 0 AAAAAAAAAT 0.908782 -24 TCCAGCGTTTAAAGGAAAAAAACTGGTTTTCGAT 2 194 0 AAAAAAAAAT 0.908782 -407 TAAACGCTGGAAAAAAAGGAGAAATTATTGGAAC 2 217 1 AAAAAGGAAA 0.896344 -384 AAAATTGGAAAAAAGAAGAAGATAGTTACAAACC 2 472 0 AAAAAGAAAA 0.954271 -129 TTTTATTATTAAAACAGAAAAATTGGAAAAAAGA 2 490 0 AAAAGAAAAT 0.805006 -111 TAATAATAAAAAAACAAGAACAAACAAGCTCAAC 2 513 1 AAAAAGAAAA 0.954271 -88 ACAAAGAATAAACACAAAAACAAAAAGTTTTTTT 2 562 1 AACAAAAAAA 0.948369 -39 TTTTTGATTAAAATTAAAAAAACTTTTTGTTTTT 2 577 0 AAAAAAAAAT 0.908782 -24 CCGGAGTTAAAACTAAAAAATATTAAATGAGAAA 4 101 1 AACAAAAAAT 0.882107 -500 TCAGTTCAGGAACCAAGGAACAAAGGCACCACGC 4 182 1 AACAGGAAAA 0.866565 -419 CCTTACGTGCAAAGTAGGAATAGAAATTTTACCT 4 525 0 AAAAGGAAAA 0.896344 -76 ACAATCAAAAAAAGAAAAAAGAAACAAAAGTTAA 4 563 1 AAAAAAAAAA 0.960719 -38 AACAAAAGTTAAACCAAAAAAAAAAA 4 585 1 AAAAAAAAAA 0.960719 -16 CTATAGTAGAAAAGGAAGGAAAGAAGTCTAATCG 5 60 1 AAAAAGGAAA 0.896344 -541 TGTAGGAACAAACATAAAGAGAATAATTTCACTG 5 406 0 AACAAAGAAT 0.756127 -195 ATTAAGAAACAACGGAGGAAAACTCAAATTCTAA 6 33 1 AACAGGAAAT 0.725685 -298 CACCTTCATAAACTTAAAAATATTATATTAGAAT 6 60 0 AACAAAAAAT 0.882107 -271 TAGAAACCATAAAGAAAAGATATATTCAAAGCCT 6 258 1 AAAAAAGAAA 0.910191 -73 TTTATACGTGAAATCAAAAAGAAACCAAACTTGA 8 358 0 AAAAAAAAAA 0.960719 -243 ACTAGCATGAAAAGAAAAGAGAGAGACTCTTTTA 8 388 0 AAAAAAGAAA 0.910191 -213 AGAAACTATCAAAAGAAAGAGAAAAGTCGATTGA 8 446 1 AAAAAAGAAA 0.910191 -155 GAGGAAAGGAAACTAAAGGAAAAAA 11 586 1 AACAAGGAAA 0.866565 -15 AAGAGGAAAAAAAATAGAAAAAAAAATAGAAAAT 13 126 1 AAAAGAAAAA 0.910191 -175 ACACTTGCACAACGAAAGAAAAATATCACACCTA 14 504 0 AACAAGAAAT 0.864575 -97 TTGATTTATCAAATGAGAAAGAATTTACACAACA 14 535 0 AAAAGAAAAT 0.805006 -66 CTCATTTGATAAATCAAAAAAAAAAAAAAAAAAA 14 552 1 AAAAAAAAAA 0.960719 -49 AAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAA 14 567 1 AAAAAAAAAA 0.960719 -34 CCCCTGAAATAAAGAAAAAAAAGAAAAAGAAGGT 15 177 0 AAAAAAAAAA 0.960719 -424 ATCAGTGCAAAACTAAAAAAGAAAGAAATTTTGT 15 213 1 AACAAAAAAA 0.948369 -388 TCATACCAAAAAAAGAAGAAGAAAAAGATAGGAA 15 517 0 AAAAAGAAAA 0.954271 -84 *** ***** * * Masking position 6 Map Score: 53.822 Number of sites scoring better than the average of aligned sites = 6924 Number in coding regions = 1315 Number in noncoding regions = 5609 Number of orfs with sites within 600 bp upstream = 1664 Fraction of orfs with sites within 600 bp upstream = 0.267266 Motif number 2 CCCGTGGAAATGAGGGGTATGCAGGAATTTGT 1 23 1 TGGGGGTAGC 0.995913 -578 CAGGAATTTGTGCGGGGTAGGAAATCTTTTTT 1 44 1 TGGGGGTAGA 0.986087 -557 CTGCACTTTTTGTGGGGTAAACGTGGATAAAA 2 142 0 TGGGGGTAAC 0.977866 -459 GAAATGTGGGGGTGGGGTATGCGTTTCATGTG 4 131 1 GGGGGGTAGC 0.996754 -470 GGCACCACGCGGCGTGGGATGCTTTCTTGTGC 4 206 1 GGGTGGGAGC 0.982031 -395 TTGTTTCGGATGTGGGGTACACTCAGTTGACT 5 314 1 TGGGGGTAAC 0.977866 -287 TTATGAAGGTGGGGTGGTAAGAAAAGCAACTA 6 83 1 GGGTGGTAGA 0.950866 -248 CCACGTCATATGAGTGGTATTCTTCTATCAGC 7 16 0 TGGTGGTATC 0.869815 -302 ATTAAAAACGTGAGGGGGACACGCAACTTCGG 7 156 0 TGGGGGGAAC 0.97318 -162 TAGATTTTAAGGTGGGGAAAGAACATGAGACC 7 254 0 GGGGGGAAGA 0.919009 -64 AACAGTAGAGTGCGGGGTATGCTTTTCTTTTG 11 243 1 TGGGGGTAGC 0.995913 -358 TGACAAGTTTGGTGGGGGTTGCTAGGTTTTGA 12 435 0 GGGGGGGTGC 0.955711 -166 GGAAGGTGGAGGTGGGGTATGCATTTTTGTGC 14 105 1 GGGGGGTAGC 0.996754 -496 TGCATAGAGTGGCGGGGTATTAAGAATAATGC 14 134 1 GGGGGGTATA 0.918694 -467 TAGGCACAAATGCGTGGGATGACTTGACTGTG 14 179 1 TGGTGGGAGA 0.926548 -422 CAGCATTTATTGTGGAGGAGGCGGTTTCATCT 15 312 0 TGGGAGGAGC 0.913638 -289 ** ****** ** Masking position 7 Map Score: 26.7875 Number of sites scoring better than the average of aligned sites = 175 Number in coding regions = 112 Number in noncoding regions = 63 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 3 TCCACGGGGTAAAAAAAAAA 1 1 0 AAAAAAAAAA 0.901512 -600 TGTTCCTCCTAAAAAAAAAAAAGATTTCCT 1 62 0 AAAAAAAAAA 0.901512 -539 TTTATTCCCTGGAAAAAAAATTTTGCGTTG 1 170 0 GGAAAAAAAA 0.882541 -431 ATGAAAAGGAGGAAAATACAAAATATACTA 1 396 1 GGAAAATACA 0.553217 -205 ACTAGAACTGAAAAAAAAAAAGTATAAATA 1 422 1 AAAAAAAAAA 0.901512 -179 TAAAACATCAAGAACAAACAAGCTCAACTT 1 519 1 AGAACAAACA 0.860023 -82 CTTTGTTCTTAGAAAAGACAAGTTGAGCTT 1 538 0 AGAAAAGACA 0.831597 -63 GTCTTTTCTAAGAACAAAGAATAAACACAA 1 549 1 AGAACAAAGA 0.831597 -52 AATAAACACAAAAACAAAAAGTTTTTTTAA 1 568 1 AAAACAAAAA 0.847851 -33 CTGCGTTCAGGAAAAAAAGAGATCGGGTGG 2 67 0 GAAAAAAAGA 0.735895 -534 AAAGAGCTCGAGAAAAGACATATGGTTTGT 2 449 1 AGAAAAGACA 0.831597 -152 CAGAAAAATTGGAAAAAAGAAGAAGATAGT 2 480 0 GGAAAAAAGA 0.811579 -121 TTTTATTATTAAAACAGAAAAATTGGAAAA 2 494 0 AAAACAGAAA 0.731659 -107 TAAAAAAACAAGAACAAACAAGCTCAACTT 2 519 1 AGAACAAACA 0.860023 -82 CTTTGTTCTTAGAAAAGACAAGTTGAGCTT 2 538 0 AGAAAAGACA 0.831597 -63 GTCTTTTCTAAGAACAAAGAATAAACACAA 2 549 1 AGAACAAAGA 0.831597 -52 AATAAACACAAAAACAAAAAGTTTTTTTAA 2 568 1 AAAACAAAAA 0.847851 -33 ATGCGCACGGAAAAAAAACACTCCCGAATT 3 79 0 AAAAAAAACA 0.867176 -522 ACCTTCTGGAGAAAGAAACAACTCAATAAC 3 364 1 GAAAGAAACA 0.464617 -237 AATCAAAAAAAGAAAAAAGAAACAAAAGTT 4 565 1 AGAAAAAAGA 0.890249 -36 AAGTTAAACCAAAAAAAAAAA 4 590 1 AAAAAAAAAA 0.901512 -11 AGGGGAGTACAAAAAATAAAAGAAGGCAAC 5 122 0 AAAAAATAAA 0.678967 -479 ATACTTTGTTAAAAAATACATCCGCTCGAT 5 154 0 AAAAAATACA 0.601351 -447 AAAACATGTAGGAACAAACATAAAGAGAAT 5 416 0 GGAACAAACA 0.765396 -185 TAGCATGAAAAGAAAAGAGAGAGACTCTTT 8 390 0 AGAAAAGAGA 0.798749 -211 AGAAACTATCAAAAGAAAGAGAAAAGTCGA 8 446 1 AAAAGAAAGA 0.56776 -155 TTATTTTTCTAGAAAAAAGAATATATTAGA 8 569 1 AGAAAAAAGA 0.890249 -32 AAATAAGAATGAAACAAAAATGGTCGTTTA 10 226 0 GAAACAAAAA 0.747413 -75 GCCGTGAGGAGAAAAAGAAACTTAAAAGTG 12 118 0 GAAAAAGAAA 0.70399 -483 CTAGGTTTTGAAAACATAAAAAATGGGCGA 12 416 0 AAAACATAAA 0.562848 -185 CAAAAGAAGAGGAAAAAAAATAGAAAAAAA 13 120 1 GGAAAAAAAA 0.882541 -181 GAAAAAAAATAGAAAAAAAAATAGAAAATA 13 131 1 AGAAAAAAAA 0.933993 -170 AAAAAAAAATAGAAAATAAAAATGTCAGTA 13 143 1 AGAAAATAAA 0.765771 -158 CTTGCACAACGAAAGAAAAATATCACACCT 14 505 0 GAAAGAAAAA 0.548883 -96 TTGATAAATCAAAAAAAAAAAAAAAAAAAA 14 557 1 AAAAAAAAAA 0.901512 -44 AAAAAAAAAAAAAAAAAAAAGAAAAGAAAA 14 567 1 AAAAAAAAAA 0.901512 -34 AAAAAAGAAAAGAAAAGAAAAATTAATAAA 14 581 1 AGAAAAGAAA 0.873792 -20 CCTGAAATAAAGAAAAAAAAGAAAAAGAAG 15 179 0 AGAAAAAAAA 0.933993 -422 GTGCAAAACTAAAAAAGAAAGAAATTTTGT 15 217 1 AAAAAAGAAA 0.817478 -384 TCCAGGTGTCAAAAAATAAATTATATCCGT 15 258 1 AAAAAATAAA 0.678967 -343 CAAAAAAAGAAGAAGAAAAAGATAGGAACA 15 515 0 AGAAGAAAAA 0.779834 -86 ********** Masking position 6 Map Score: 42.2834 Number of sites scoring better than the average of aligned sites = 14576 Number in coding regions = 2979 Number in noncoding regions = 11597 Number of orfs with sites within 600 bp upstream = 2657 Fraction of orfs with sites within 600 bp upstream = 0.426759 Motif number 4 TTTTTTTTTTACCCCGTGGAAATGAGGG 1 9 1 TTACCCCGTG 0.795575 -592 TGCCATCTAATTTTTCCTTGTTGCCTCTGA 1 295 0 TTTTTCCTTG 0.811454 -306 ATGGTGGGGATTTTTCCTTGAAAGACGACT 1 328 0 TTTTTCCTTG 0.811454 -273 GGAGATTCGTTTTATCCACGTTTACCCCAC 2 133 1 TTTATCCACG 0.810434 -468 CACTCCCGAATTTCTCCGTGAAAAGAGCCT 3 61 0 TTTCTCCGTG 0.977437 -540 GGGAGTGTTTTTTTTCCGTGCGCATTTTCT 3 84 1 TTTTTCCGTG 0.948 -517 GCGGAACGAGATATTCCGTGTTTATTGCGG 3 198 0 ATATTCCGTG 0.790397 -403 TTTCTCTGTGATAATCCGCGACCGAGAGTT 3 239 0 ATAATCCGCG 0.789293 -362 ATCTGGAAAAATTCTCCACGAAGCTTTCTC 3 263 0 ATTCTCCACG 0.916164 -338 ATGATTATACTTTCCCCACGCACATGAAAC 4 153 0 TTTCCCCACG 0.825973 -448 ATTATCTAATATTATCCTCGAATATCTACG 4 293 0 ATTATCCTCG 0.758524 -308 GTTGATCCGCATTCCCCGTGGCTGTGCACA 8 107 1 ATTCCCCGTG 0.910374 -494 CCTTTCTTGTTTACTCCGTGCCCCTAAAAC 8 302 0 TTACTCCGTG 0.924217 -299 CCAAAATATAATTTTCCGTGAAATAGATTC 12 20 1 ATTTTCCGTG 0.930532 -581 ATTATCTAATATTATCCTCGAACGTTTACG 14 259 0 ATTATCCTCG 0.758524 -342 TACATAACCATTTCTCCGCGGAATTACATA 15 63 1 TTTCTCCGCG 0.984376 -538 TACATAATCATTTCTCCGCGAAAATTACAT 15 87 1 TTTCTCCGCG 0.984376 -514 TACATAATCATTTCTCCGTGCGAGTTATAA 15 112 1 TTTCTCCGTG 0.977437 -489 CCGACGCCTGATTTTCCACGGATATAATTT 15 275 0 ATTTTCCACG 0.821392 -326 ********** Masking position 2 Map Score: 17.9247 Number of sites scoring better than the average of aligned sites = 582 Number in coding regions = 383 Number in noncoding regions = 199 Number of orfs with sites within 600 bp upstream = 159 Fraction of orfs with sites within 600 bp upstream = 0.0255381 Motif number 5 GCGTTGCCTTTCTGGAGAATTTTTTCGAAT 1 146 0 TCTGGAGAAT 0.835533 -455 AAGTTTATTCCCTGGAAAAAAAATTTTGCG 1 173 0 CCTGGAAAAA 0.914325 -428 CCCTCTGCGTTCAGGAAAAAAAGAGATCGG 2 71 0 TCAGGAAAAA 0.847967 -530 TCCTTTAAACGCTGGAAAAAAAGGAGAAAT 2 212 1 GCTGGAAAAA 0.978967 -389 AGCAGGCGAAGCTGGAAGAATATAGCTAAG 3 112 0 GCTGGAAGAA 0.920773 -489 GCCGGACGAATCCGGAAAAACTACGTGACA 3 158 0 TCCGGAAAAA 0.938322 -443 AAGCGGAAAATCTGGAAAAATTCTCCACGA 3 272 0 TCTGGAAAAA 0.98266 -329 ACAACGACCTTCTGGAGAAAGAAACAACTC 3 358 1 TCTGGAGAAA 0.969203 -243 TTTCTTCTCTTCTGGAGAAATTCTCTGGGG 3 439 0 TCTGGAGAAA 0.969203 -162 GCAATTACTTGCTGGAAGATACGACCTCAC 4 450 0 GCTGGAAGAT 0.652304 -151 TAATATGTCATCTAGAAAAAATTTTATATA 6 167 1 TCTAGAAAAA 0.849719 -164 TATTCTTTTTTCTAGAAAAATAATATTTTT 8 562 0 TCTAGAAAAA 0.849719 -39 TTCCGAATGCTCTGCAAAAAAGTTAAACAT 11 405 1 TCTGCAAAAA 0.816161 -196 TCCTTATGAATCCGGAGAAAAGCGGGGTCT 12 169 1 TCCGGAGAAA 0.894165 -432 AAACTAAAATGATGGAAAAACAGGTGGAAG 12 267 0 GATGGAAAAA 0.711 -334 GCGAAGCAGGGCTGGAAAAATTAACGGTAC 12 333 1 GCTGGAAAAA 0.978967 -268 ********** Masking position 6 Map Score: 13.9099 Number of sites scoring better than the average of aligned sites = 959 Number in coding regions = 685 Number in noncoding regions = 274 Number of orfs with sites within 600 bp upstream = 243 Fraction of orfs with sites within 600 bp upstream = 0.0390299 Motif number 6 CCACACTTCTCAGAAATGCATGCAGTGGCA 1 108 1 CAGAAATGCA 0.688288 -493 AAAAATTCTCCAGAAAGGCAACGCAAAATT 1 152 1 CAGAAAGGCA 0.735611 -449 AAGCAAATGTAAAAGATGAACCTCAGAAGA 1 251 0 AAAAGATGAA 0.822211 -350 GAAAGAATGAAAAGGAGGAAAATACAAAAT 1 390 1 AAAGGAGGAA 0.841049 -211 AAAATTGGAAAAAAGAAGAAGATAGTTACA 2 476 0 AAAAGAAGAA 0.859449 -125 ATTTCTCCAGAAGAGAAGAAAAGTCAAAGT 3 448 1 AAGAGAAGAA 0.865763 -153 ACCCACCGCACAAGAAAGCATCCCACGCCG 4 215 0 CAAGAAAGCA 0.715384 -386 AAAGTCATATAAAAGAGGCAGATGAAACAG 4 486 1 AAAAGAGGCA 0.876634 -115 CATAACAATCAAAAAAAGAAAAAAGAAACA 4 559 1 AAAAAAAGAA 0.833735 -42 TATAGTAGAAAAGGAAGGAAAGAAGTCTAA 5 61 1 AAGGAAGGAA 0.820679 -540 ACAAAAAATAAAAGAAGGCAACTGACAACC 5 114 0 AAAGAAGGCA 0.841049 -487 GGTTATTACACAGAAATGAATTATACCAGT 5 380 1 CAGAAATGAA 0.644224 -221 GTGGGGTGGTAAGAAAAGCAACTAAAATAA 6 91 1 AAGAAAAGCA 0.865763 -240 TTCCCGGATTAAGGGATGCATTCTAACTCT 8 58 1 AAGGGATGCA 0.843773 -543 GTATCCCAACCAAAGATGAAACCGCCAAAT 9 185 0 CAAAGATGAA 0.676743 -116 TAACCATTGTAAGGGATGAAGCTTGACTAG 10 189 1 AAGGGATGAA 0.815806 -112 AGTGACTTATAAAAAATGCAATCTAAAATA 10 251 0 AAAAAATGCA 0.822211 -50 GCACGTTCAAAAGAAAAGCATACCCCGCAC 11 252 0 AAGAAAAGCA 0.865763 -349 TATTGACAGAAAAGGAGGAAAGGAAACTAA 11 572 1 AAAGGAGGAA 0.841049 -29 AAGTATAATTAAAGAAAGCACTGATATACA 13 63 0 AAAGAAAGCA 0.847384 -238 ACTCTATGCACAAAAATGCATACCCCACCT 14 114 0 CAAAAATGCA 0.676743 -487 AAAAAAAAAAAAAAAAAGAAAAGAAAAGAA 14 570 1 AAAAAAAGAA 0.833735 -31 AAAAAAAGAAAAGAAAAGAAAAATTAATAA 14 580 1 AAGAAAAGAA 0.840991 -21 GTGAAGTGCCAAGGGATGCACGAGAAAAGC 15 144 0 AAGGGATGCA 0.843773 -457 GAAATAAAGAAAAAAAAGAAAAAGAAGGTT 15 176 0 AAAAAAAGAA 0.833735 -425 CAAAACTAAAAAAGAAAGAAATTTTGTGAA 15 220 1 AAAGAAAGAA 0.819925 -381 TAATTAGCGAAAAAGAGGAACTGAGAAAGA 15 441 0 AAAAGAGGAA 0.853528 -160 TCATACCAAAAAAAGAAGAAGAAAAAGATA 15 521 0 AAAAGAAGAA 0.859449 -80 ********** Masking position 6 Map Score: 24.0864 Number of sites scoring better than the average of aligned sites = 6665 Number in coding regions = 3552 Number in noncoding regions = 3113 Number of orfs with sites within 600 bp upstream = 1912 Fraction of orfs with sites within 600 bp upstream = 0.307099 Motif number 7 AAAGTCGTCTTTCAAGGAAAAATCCCCACC 1 326 1 TTCAAGGAAA 0.606801 -275 GTAGGCTCTTTTCACGGAGAAATTCGGGAG 3 59 1 TTCACGGAGA 0.941199 -542 AATATCTCGTTCCGCGGATTCGGTTAAACT 3 213 1 TCCGCGGATT 0.933024 -388 TAAACTCTCGGTCGCGGATTATCACAGAGA 3 237 1 GTCGCGGATT 0.897822 -364 CAGAGAAAGCTTCGTGGAGAATTTTTCCAG 3 261 1 TTCGTGGAGA 0.796375 -340 GACGTAGATATTCGAGGATAATATTAGATA 4 291 1 TTCGAGGATA 0.913545 -310 TTACTGTTACTTCCCGGATTAAGGGATGCA 8 48 1 TTCCCGGATT 0.890044 -553 AACAGGCCCGGTCGCGGAATTATTCTCGGG 10 39 0 GTCGCGGAAT 0.799144 -262 AAGAATCTATTTCACGGAAAATTATATTTT 12 22 0 TTCACGGAAA 0.885712 -579 CTTGTCATCGTTCCCGGATTCACAAATGAT 12 460 1 TTCCCGGATT 0.890044 -141 GACGTAAACGTTCGAGGATAATATTAGATA 14 257 1 TTCGAGGATA 0.913545 -344 ATTATGTAATTCCGCGGAGAAATGGTTATG 15 65 0 TCCGCGGAGA 0.958034 -536 TTATGTAATTTTCGCGGAGAAATGATTATG 15 89 0 TTCGCGGAGA 0.98024 -512 CGCCTGATTTTCCACGGATATAATTTATTT 15 271 0 TCCACGGATA 0.88736 -330 ********** Masking position 8 Map Score: 6.44618 Number of sites scoring better than the average of aligned sites = 288 Number in coding regions = 178 Number in noncoding regions = 110 Number of orfs with sites within 600 bp upstream = 84 Fraction of orfs with sites within 600 bp upstream = 0.0134918 Motif number 8 TATGCAGGAATTTGTGCGGGGTAGGAAATC 1 40 1 TTTGTGCGGG 0.977885 -561 GTACCTGCACTTTTTGTGGGGTAAACGTGG 2 148 0 TTTTTGTGGG 0.981954 -453 CCCCAGATTTTTTGAGTGGGCCCCCAATGT 3 402 0 TTTGAGTGGG 0.883745 -199 AAAATAATATTTTTTGCTGGTTTTAACAAA 8 546 0 TTTTTGCTGG 0.947161 -55 GGTTTTTGCTGGCGTTCTGAGC 10 289 0 TTTTTGCTGG 0.947161 -12 GAGGCGTCATTTTTTGTGGGAGGAGAAGAA 12 69 0 TTTTTGTGGG 0.981954 -532 GGTTATGTAATTTTTGTGGGGAACTGAACA 15 42 0 TTTTTGTGGG 0.981954 -559 ********** Masking position 3 Map Score: 4.60836 Number of sites scoring better than the average of aligned sites = 103 Number in coding regions = 67 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 33 Fraction of orfs with sites within 600 bp upstream = 0.00530035 Motif number 9 ACAACTGGTGGAAGAATGCCCACACTTCTCAGAA 1 89 1 GAAAATGCAA 0.975417 -512 AAATAGAGACGATATATGCCAATACTTCACAATG 1 447 1 GATTATGCAA 0.941683 -154 GAAATTATTGGAACTTTGCAGAGAATAGTCCGTA 2 237 1 GAATTTGCAA 0.941683 -364 ATCGTTTATTGAACTATGCAGACAGTTAGTTTAA 4 46 1 GAATATGCAA 0.983077 -555 GATTCCCCTGGATATATGCGCAAATGAACATAGT 4 389 1 GATTATGCAA 0.941683 -212 AATGAATCGAGAATAATGAATAAAACACTGAGTA 6 199 0 GAAAATGAAA 0.776113 -132 CAAGCGGCTGGAATTATCCCGAGAATAATTCCGC 10 22 1 GAATATCCAA 0.882656 -279 ATATCTTGTGGAAATTTGCGTACAAGATTTT 11 8 0 GAATTTGCAA 0.941683 -593 GGGGTATTAAGAATAATGCACATATAGGCACATA 14 147 1 GAAAATGCAA 0.975417 -454 CTGACCACACGAACAATGCATACACTCGGACACC 15 341 1 GAAAATGCAA 0.975417 -260 *** ***** * * Masking position 7 Map Score: 4.14097 Number of sites scoring better than the average of aligned sites = 144 Number in coding regions = 92 Number in noncoding regions = 52 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159 Motif number 10 TAGAAAAGACAAGTTGAGCTTGTTTGTTCTTGAT 1 525 0 AGGACTTGTT 0.990201 -76 TAGAAAAGACAAGTTGAGCTTGTTTGTTCTTGTT 2 525 0 AGGACTTGTT 0.990201 -76 TTTAACTCAGATGTAAATTTTGTTTGTGATTCTA 3 572 0 AGAATTTGTT 0.774928 -29 ATAGCTAGCTATAAAGAGCTTGTTTAACAACATA 5 30 0 AAGACTTGTT 0.9661 -571 GGAATTGATTATGGGGACATTGTTGCCTTTATAT 7 214 0 AGGAATTGTT 0.918668 -104 TGCAAAGTGAAAGCGAATCTTGTTTGCGTATATT 8 497 0 AGAACTTGTT 0.945846 -104 ACTATTACTGAAGTTGAACTTGTTTCATGTCTCC 11 54 1 AGGACTTGTT 0.990201 -547 TAACGTGTCTATGTTGAGCTTCTTAATATCTACC 13 21 1 AGGACTTCTT 0.929057 -280 AGAAATACTAACAAAGAATTTGTTAACGTATTCT 13 245 1 AAGATTTGTT 0.848934 -56 TACGAAGCGTAAACTGACCTTGTTCAGTTCCCCA 15 22 1 AAGACTTGTT 0.966146 -579 * * ** ****** Masking position 7 Map Score: 5.80907 Number of sites scoring better than the average of aligned sites = 113 Number in coding regions = 88 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 11 TTTTCAATGAAGGCACGGAGGGCATCTGAA 2 323 0 AGGCACGGAG 0.964805 -278 ACAATATAGAAAGCACAGAAACATATAAAA 2 421 1 AAGCACAGAA 0.760479 -180 CTAAGAAAATGCGCACGGAAAAAAAACACT 3 87 0 GCGCACGGAA 0.982556 -514 AGAGAAAAGGGCGCACAGAGTTAGAATGCA 8 74 0 GCGCACAGAG 0.982556 -527 TTAGTTTTAGGGGCACGGAGTAAACAAGAA 8 299 1 GGGCACGGAG 0.990147 -302 TGTTAAGACTGAGCACGGTGACTCCAAAGA 9 59 1 GAGCACGGTG 0.899923 -242 TACCACTGTAGCGCACAAAGCTAAAAATAA 11 182 0 GCGCACAAAG 0.831115 -419 ACAGGCAAAATAGCACGGAATCTATTCAAA 14 314 1 TAGCACGGAA 0.914241 -287 GAAACCTCCTTGGCACAGAATTTTATCGTT 14 390 1 TGGCACAGAA 0.877356 -211 CACTTATAACTCGCACGGAGAAATGATTAT 15 115 0 TCGCACGGAG 0.980986 -486 ********** Masking position 5 Map Score: 4.32179 Number of sites scoring better than the average of aligned sites = 145 Number in coding regions = 91 Number in noncoding regions = 54 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 12 TTTTTTTTTTACCCCGTGGAAATGAGGGG 1 7 1 TTTTACCCCG 0.85091 -594 CGAGATCCCCTGTAACTTATTGGCAACTGAAAG 1 362 1 TGTAACTTAG 0.665927 -239 TATTCCATAATTTTACTTAATAGCTTTTCATAA 3 535 1 TTTTACTTAG 0.901516 -66 GATTGTTTAACTCAGATGTAAATTTTGT 3 583 0 TTTAACTCAG 0.836451 -18 GTTAGTTTAATTTAACTTCAAGGGGCGCGCACC 4 70 1 TTTAACTTCG 0.952316 -531 ATTTTTTAGTTTTAACTCCGGTGCGCGCCCCTT 4 89 0 TTTAACTCCG 0.955879 -512 CTTTTATTTTTTGTACTCCCCTGAATCGAGCGG 5 130 1 TTGTACTCCG 0.85091 -471 AGAATTTGAGTTTTCCTCCGTTGTTTCTTAATC 6 32 0 TTTTCCTCCG 0.869017 -299 GTCATGCGGATGTTTCTTCGGTGGGTATGGGTC 8 12 0 TGTTTCTTCG 0.754694 -589 GACGTGTTACTGTTACTTCCCGGATTAAGGGAT 8 42 1 TGTTACTTCG 0.942512 -559 CACTTTGCAATTTTACTTCATAGCTTTGTTAAA 8 522 1 TTTTACTTCG 0.97486 -79 GTTCATATTATTTTACTTAAGAGTTCATGTCTT 10 116 0 TTTTACTTAG 0.901516 -185 ATATCAATAGTTTTACTTCTATGGATAGTAATA 11 539 0 TTTTACTTCG 0.97486 -62 AAATAGATTCTTTTTCTCCACTGCACGACTTCT 12 40 1 TTTTTCTCCG 0.887559 -561 GTTTAATTATTTTAACTTCAAGGGTTCGTTTCG 14 47 1 TTTAACTTCG 0.952316 -554 ********* * Masking position 1 Map Score: 7.0414 Number of sites scoring better than the average of aligned sites = 721 Number in coding regions = 478 Number in noncoding regions = 243 Number of orfs with sites within 600 bp upstream = 195 Fraction of orfs with sites within 600 bp upstream = 0.0313203 Motif number 13 AAGGAAAAATCCCCACCATCTTTCGAGATC 1 339 1 CCCCACCATC 0.993139 -262 CGCTACCTAGCCTCACCACCCGATCTCTTT 2 52 1 CCTCACCACC 0.963354 -549 CATTGTGGGGCCCCGGCATCGAAAACCAGT 2 177 1 CCCCGGCATC 0.895899 -424 GAAACGCATACCCCACCCCCACATTTCTCA 4 128 0 CCCCACCCCC 0.969353 -473 GCGGATTCAACCTCACCATCTTGCCTACCT 4 248 0 CCTCACCATC 0.969656 -353 ACTGAGTGTACCCCACATCCGAAACAAAGT 5 311 0 CCCCACATCC 0.83438 -290 TTTCTTACCACCCCACCTTCATAAACTTAA 6 77 0 CCCCACCTTC 0.988419 -254 AGCCAGGAAACTCCACCATTATCTAATGTA 7 107 1 CTCCACCATT 0.831167 -211 CATGTTCTTTCCCCACCTTAAAATCTATAA 7 259 1 CCCCACCTTA 0.88175 -59 TCCAGCCCTGCTTCGCCATCGCAAAAACGA 12 319 0 CTTCGCCATC 0.797719 -282 CATACCCCACCTCCACCTTCCTATTTTGTG 14 96 0 CTCCACCTTC 0.949599 -505 ATTCTTAATACCCCGCCACTCTATGCACAA 14 131 0 CCCCGCCACT 0.911162 -470 ********** Masking position 4 Map Score: 8.00368 Number of sites scoring better than the average of aligned sites = 622 Number in coding regions = 482 Number in noncoding regions = 140 Number of orfs with sites within 600 bp upstream = 106 Fraction of orfs with sites within 600 bp upstream = 0.0170254 Motif number 14 TTTTTTTTTTAGGAGGAACAACTGGTGGAAG 1 72 1 AGAGGAACAA 0.843866 -529 CACTACTTCTCGTAGGAACAATTTCGGGCCC 1 212 1 CGAGGAACAA 0.931512 -389 GGATAATTTTCAGAGGCAACAAGGAAAAATT 1 286 1 CAAGGCAACA 0.90628 -315 AAGAATGAAAAGGAGGAAAATACAAAATATA 1 392 1 AGAGGAAAAT 0.610808 -209 TTCCAGCGTTTAAAGGAAAAAAACTGGTTTT 2 198 0 TAAGGAAAAA 0.800813 -403 GAGAATAGTCCGTAGGCAAATTGAAAATGTT 2 257 1 CGAGGCAAAT 0.887661 -344 AACCAAGGAACAAAGGCACCACGCGGCGTGG 4 192 1 CAAGGCACCA 0.909339 -409 AAAAAATAAAAGAAGGCAACTGACAACCCTT 5 111 0 AGAGGCAACT 0.600007 -490 TTGGAAAACATGTAGGAACAAACATAAAGAG 5 419 0 TGAGGAACAA 0.843866 -182 AAATTATATATAAAGGCAACAATGTCCCCAT 7 207 1 TAAGGCAACA 0.793502 -111 GCTGCATATTCATAGGCACATCATGAATTTA 11 132 0 CAAGGCACAT 0.863454 -469 GCTAGCCTGCTGCAGGCAAAATTATTTTTAG 11 161 1 TGAGGCAAAA 0.912474 -440 GTGCACTGCGCAGAGGCACAATTTAGCAAAG 11 278 1 CAAGGCACAA 0.954536 -323 GAAAGGAAACTAAAGGAAAAAA 11 589 1 TAAGGAAAAA 0.800813 -12 GAAGAAAACGCGTAGGAAAAAGGATTTCGGA 12 217 0 CGAGGAAAAA 0.929143 -384 CCCTCAAAAGAAGAGGAAAAAAAATAGAAAA 13 116 1 AAAGGAAAAA 0.800813 -185 CATATAGGCACATAGGCACAAATGCGTGGGA 14 167 1 CAAGGCACAA 0.954536 -434 CTCGTCTAAAAACAGGCAAAATAGCACGGAA 14 303 1 AAAGGCAAAA 0.889425 -298 ** ******** Masking position 4 Map Score: 10.8412 Number of sites scoring better than the average of aligned sites = 1316 Number in coding regions = 916 Number in noncoding regions = 400 Number of orfs with sites within 600 bp upstream = 313 Fraction of orfs with sites within 600 bp upstream = 0.050273 Motif number 15 GAGGATAATATTAGATAATAATATCCTTTAAC 4 304 1 TTAATAAAAT 0.909257 -297 TCTTGTGTCCTTATATAACAATTCCTTCTGAT 5 449 0 TTAATAAAAT 0.909257 -152 ACTCAAATTCTAATATAATATTTTTAAGTTTA 6 54 1 TAAATAAATT 0.776951 -277 GAAAAGCAACTAAAATAATCTTCAAGTCAATT 6 103 1 TAAATAACTT 0.823774 -228 CACTGAGTATTTATATAAAATTTTTTCTAGAT 6 176 0 TTAATAAATT 0.855238 -155 AAATGCAATCTAAAATAAGAATGAAACAAAAA 10 236 0 TAAATAAAAT 0.855238 -65 CATACTTGAGTTATATAACCATGTTTAACTTT 11 423 0 TTAATAACAT 0.930781 -178 TAATATTAGATAATATAATATTAGTATCCTCG 14 275 1 TAAATAAATT 0.776951 -326 CCCACAAAAATTACATAACCATTTCTCCGCGG 15 52 1 TTAATAACAT 0.930781 -549 CTCCGCGGAATTACATAATCATTTCTCCGCGA 15 76 1 TTAATAACAT 0.930781 -525 TCCGCGAAAATTACATAATCATTTCTCCGTGC 15 101 1 TTAATAACAT 0.930781 -500 *** **** *** Masking position 7 Map Score: 2.69642 Number of sites scoring better than the average of aligned sites = 398 Number in coding regions = 156 Number in noncoding regions = 242 Number of orfs with sites within 600 bp upstream = 135 Fraction of orfs with sites within 600 bp upstream = 0.0216833