AlignACE version 2.2 July 7, 1998 AlignACE -jKTR.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YBR199W 385 bp YBR199W KTR4 1-1395 Putative alpha-1,2-mannosyltransferase #2 YBR205W 300 bp YBR205W KTR3 1-1215 Putative alpha-1,2-mannosyltransferase #3 YIL085C 300 bp YIL085C KTR7 1-1554 Putative mannosyltransferase of the KRE2 family #4 YKR061W 334 bp YKR061W KTR2 1-1278 putative mannosyltransferase\; type 2 membrane protein #5 YNL029C 600 bp YNL029C KTR5 1-1569 Putative mannosyltransferase of the KRE2 family #6 YOR099W 600 bp YOR099W KTR1 1-1182 type 2 membrane protein\; probable secretory protein #7 YPL053C 600 bp YPL053C KTR6 1-1341 mannosylphosphate transferase Motif number 1 AATTGTTCAAAAGCAAAAAAGTTTCAAGATT 1 129 0 AAGAAAAAAG 0.844497 -257 ATTCATTACCAAGAGAAAAAGTTCTCGGTTT 2 65 1 AAGGAAAAAG 0.868679 -236 AAGAAAGCAAAAACAAAAAGAGCTCACATTG 3 143 0 AAAAAAAAGA 0.912741 -158 TACAAGTGGAAAACGAAAAAAAAAAATTGGC 3 182 1 AAAGAAAAAA 0.969935 -119 GAAATTTAGTAAGCGAAAAAAAAAAAGAAAA 4 141 1 AAGGAAAAAA 0.94366 -194 GCGAAAAAAAAAAAGAAAAAAAAAAGAACAG 4 153 1 AAAGAAAAAA 0.969935 -182 AAAATAGAATAAACATAATAAGCCACCATTT 4 194 1 AAAATAATAA 0.771103 -141 TATAGAAAAAACGCAAAAAAAGCGTTGCATG 4 281 0 ACGAAAAAAA 0.717874 -54 GTCGAAAGGAAAACAAAAAAACGTATCGCTG 5 23 1 AAAAAAAAAA 0.963618 -578 AGAAACACTTAAAGAAAATAAGTGATGAGGA 6 62 0 AAAAAAATAA 0.868329 -539 AAATTTCGTCAAAGAAAAAAATTAAAATGAA 6 103 1 AAAAAAAAAA 0.963618 -498 AAAAAAATTAAAATGAAAAAGCATTTCAATG 6 117 1 AAAGAAAAAG 0.927225 -484 GACAAACCCTAAATATAAAAACTAGGGCGTA 6 180 1 AAAATAAAAA 0.931176 -421 TTCACTGCTAAAAAGTAATAAGTGCACACCA 7 121 0 AAAGTAATAA 0.80405 -480 ACTTACTGGAAAATGTAAAGAAATACCCAGA 7 151 1 AAAGTAAAGA 0.866818 -450 AAAGGAAAACAAAAATAATAAACGTTTTACA 7 221 0 AAAATAATAA 0.771103 -380 TAACATAAAGAAGTAAAAAGATCTTTGAAAA 7 270 0 AAGAAAAAGA 0.844497 -331 AAAAATATGGAAAGATAAAAGACCTAGTAAC 7 322 0 AAAATAAAAG 0.842355 -279 GCCACTTAAAAAACGAAAAGATAATCGGCGA 7 380 0 AAAGAAAAGA 0.927225 -221 TTGTTCCTTCACAGGAAAAAAAAATATAAAA 7 429 1 ACAGAAAAAA 0.856521 -172 CAGGAAAAAAAAATATAAAAATAACCTTCAA 7 440 1 AAAATAAAAA 0.931176 -161 *** ******* Masking position 7 Map Score: 21.0065 Number of sites scoring better than the average of aligned sites = 14444 Number in coding regions = 2898 Number in noncoding regions = 11546 Number of orfs with sites within 600 bp upstream = 2658 Fraction of orfs with sites within 600 bp upstream = 0.426919 Motif number 2 GTTCAAGTTGAGATACTTGAAAAATAAGA 1 7 0 AGATTGAAAA 0.684838 -379 ACAAAGTGGCAGAAAGAGCAATAAAGCAGGCAT 1 83 0 AGAAACAATA 0.918259 -303 TCAAAAGCAAAAAAGTTTCAAGATTTCAAATGA 1 121 0 AAAATCAAGA 0.769046 -265 CAGAACGTGCAGAAGCAACAAAAAGTTGGTCCT 2 28 0 AGAAACAAAA 0.974609 -273 TCATTAATAAAGAACTACCAAGATGGTACAGTC 2 133 0 AGAAACAAGA 0.971652 -168 GTTTTCTTCGAAAAGTTTCAAGAGGACGCGCCA 2 194 0 AAAATCAAGA 0.769046 -107 GAGAAAAGAAAGCAAAAACAAAAAGAGCTCACA 3 146 0 AGCAACAAAA 0.802773 -155 ATTCCTTTCAAGAATTTGCAAGATTATAGAAAT 4 113 1 AGAATCAAGA 0.965771 -222 GTAAGCGAAAAAAAAAAAGAAAAAAAAAAGAAC 4 149 1 AAAAAGAAAA 0.711764 -186 CTATAAAAATAGAATAAACATAATAAGCCACCA 4 189 1 AGAAACATAA 0.722534 -146 AGAGATATAAAGAATCAAGAATATCATCAGACA 4 228 0 AGAAAGAATA 0.859622 -107 GTAGGCAAGAAGGTCGAAAGGAAAACAAAA 5 8 1 AGAATGAAAG 0.780479 -593 AAAAAATGAGAGAAAAAGCAAATACCTAAAAGC 5 384 0 AGAAACAAAT 0.743912 -217 GATGATGCCAAGAAAATTGAAAAATTTGGGCAG 5 447 1 AGAATGAAAA 0.945127 -154 GTATACCTCCAGTAACACCAAAAAAAAAACCGT 6 336 1 AGTAACAAAA 0.733067 -265 TCTGCAAAAAAGAAGCAAGAAGGCACCACCTAT 6 443 0 AGAAAGAAGG 0.794106 -158 TATTATACTAAGAATCTGCAAAAAAGAAGCAAG 6 457 0 AGAATCAAAA 0.969322 -144 TCTTAAAATTAGAAAGTACAATAGTCTAGCGTA 6 488 0 AGAATCAATA 0.902413 -113 GAAAATGTAAAGAAATACCCAGATTTGATGGGT 7 159 1 AGAAACCAGA 0.7751 -442 AGAAGTAAAAAGATCTTTGAAAATGTATGAAGT 7 260 0 AGATTGAAAA 0.684838 -341 **** * ***** Masking position 1 Map Score: 10.8667 Number of sites scoring better than the average of aligned sites = 3243 Number in coding regions = 2402 Number in noncoding regions = 841 Number of orfs with sites within 600 bp upstream = 650 Fraction of orfs with sites within 600 bp upstream = 0.104401 Motif number 3 GTTGGTCCTGTGAGCCCCTTTCTGGA 2 3 0 TGCCCCTCTG 0.904797 -298 AAGGGGCTCACAGGACCAACTTTTTGTTGCTTCT 2 17 1 CGACCATTTT 0.802073 -284 TTCAAGAGGACGCGCCATTCTTTTAACCCGGCAA 2 177 0 CGCCATTTTT 0.959547 -124 ACAGTAAATTTTAGCCAATTTTTTTTTTTCGTTT 3 192 0 TGCCAATTTT 0.919233 -109 GATGTATATTCTAGCCCTTCTTTGGTACAACTGT 3 258 0 CGCCCTTTTG 0.976254 -43 ATAAACATAATAAGCCACCATTTGCCTGTCTGAT 4 202 1 TGCCACTTTG 0.942121 -133 GACACCTATACATGCAACGCTTTTTTTGCGTTTT 4 271 1 CGCAACTTTT 0.769788 -64 TAGTTGCAACTTCGCCCCTCTGTTGGGGGCTGAA 5 190 0 TGCCCCTGTT 0.944445 -411 TTCTCGAATGCCTGCCCAAATTTTTCAATTTTCT 5 457 0 CGCCCATTTT 0.982602 -144 CCCCGGTTTTTACGCCCTAGTTTTTATATTTAGG 6 187 0 TGCCCTTTTT 0.978699 -414 CCCTAATTTTCAAGCCCCGGTTTTTACGCCCTAG 6 201 0 CGCCCCTTTT 0.993126 -400 AAGCCTATTTTATGCCCTAATTTTCAAGCCCCGG 6 215 0 TGCCCTTTTT 0.978699 -386 * ***** **** Masking position 11 Map Score: 7.42977 Number of sites scoring better than the average of aligned sites = 553 Number in coding regions = 369 Number in noncoding regions = 184 Number of orfs with sites within 600 bp upstream = 168 Fraction of orfs with sites within 600 bp upstream = 0.0269836 Motif number 4 TATTAATGAACCCTTTAAAATTGCCGGGTTAAAA 2 157 1 CCCTTTATGC 0.992454 -144 GCAAACCTTCCACTTTAACTTTGTATTATATTAC 3 92 1 CACTTTATGT 0.964325 -209 AAGTTTAAAACACTTTATTAATGCTATAATTAGT 4 77 0 CACTTTATGC 0.98802 -258 AGGACCCTACCCCTGTATTTGTGCCTTGCATGAG 5 66 0 CCCTGTATGC 0.986751 -535 GCTTTGACTGCACTTTAGCTTAGTTGCAACTTCG 5 210 0 CACTTTAAGT 0.882545 -391 TTGGATAGTACACTTTAAGCATGCGGTGTGTGGA 5 415 1 CACTTTATGC 0.98802 -186 TGGATATACGCACTGTATACCTCCAGTAACACCA 6 322 1 CACTGTATCC 0.871564 -279 CGCGTGACATCCCTCTAGACGTTCCACCAGAGAT 7 34 0 CCCTCTATTC 0.879539 -567 CGCTTAGTATCCCTCTAGTCTTGTATACTCGTAC 7 531 0 CCCTCTATGT 0.960645 -70 ACCTTTTGTGCCCTTTAGTGAAGATAAGATAAGG 7 573 1 CCCTTTAAGA 0.825854 -28 ******* *** Masking position 7 Map Score: 3.52923 Number of sites scoring better than the average of aligned sites = 233 Number in coding regions = 160 Number in noncoding regions = 73 Number of orfs with sites within 600 bp upstream = 68 Fraction of orfs with sites within 600 bp upstream = 0.0109219 Motif number 5 AGCAGGCATAAGGGTAGGAAAAGAGAAGGAG 1 61 0 AGGGTAGAAA 0.919467 -325 GTACCAAAGAAGGGCTAGAATATACATCATA 3 264 1 AGGGCTGAAT 0.948117 -37 CCCTCTGTTGGGGGCTGAAAAGTACATCCGC 5 178 0 GGGGCTAAAA 0.980019 -423 TATAAAAACTAGGGCGTAAAAACCGGGGCTT 6 193 1 AGGGCGAAAA 0.977146 -408 CGTAAAAACCGGGGCTTGAAAATTAGGGCAT 6 207 1 GGGGCTGAAA 0.983397 -394 CTTGAAAATTAGGGCATAAAATAGGCTTTGC 6 221 1 AGGGCAAAAA 0.986466 -380 TCTTCACTAAAGGGCACAAAAGGTTGGGTGA 7 566 0 AGGGCAAAAA 0.986466 -35 ****** **** Masking position 9 Map Score: 3.10261 Number of sites scoring better than the average of aligned sites = 284 Number in coding regions = 180 Number in noncoding regions = 104 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 6 GAACCCGGAGTTTCTCGTATCTTTTCTCCT 1 36 1 TTTCTCGTAT 0.979389 -350 TTTGCTTTCTTTTCTCGGATACAAGTGGAA 3 163 1 TTTCTCGGAT 0.985988 -138 GTATTTGCTTTTTCTCTCATTTTTTGGATA 5 392 1 TTTCTCTCAT 0.931123 -209 TTGAAGACCCTTTCTCGAATGCCTGCCCAA 5 472 0 TTTCTCGAAT 0.987623 -129 CTCATCCACATTTCTCGAATAAATATCACA 7 477 0 TTTCTCGAAT 0.987623 -124 ********** Masking position 5 Map Score: 2.28082 Number of sites scoring better than the average of aligned sites = 160 Number in coding regions = 106 Number in noncoding regions = 54 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 7 AGTTAGAGAACGTCTTATAGAGCTCGTTCCGTTGAATGGAA 1 217 0 CGTTATGTTG 0.98405 -169 ATCAGTTCGTATGGTTCACCTTGTTGGGTCTAAACTAA 1 358 0 CGTTTTGTTG 0.989998 -28 AATTGCACGCTGGATATTGATAGTGTTGTTGTCCGCAG 2 273 0 CGCTATGTGG 0.976703 -28 ATCAGCGATACGTTTTTTTGTTTTCCTTTCGACCTTCTTGC 5 15 0 CGTTTTCTTG 0.942469 -586 TTTGCATACACGTGACTTATATTTGGTGTCGGCGTTTTCTT 6 247 1 CGTTATGTGG 0.99332 -354 TTGGTGTCGGCGTTTTCTTTACGCGGTGTAGTGTAAATCTC 6 269 1 CGTTTCGTGG 0.98535 -332 AAACTTTCTACGTATAGTTTGGCTAGTGGGGGATTTAAGGA 7 74 0 CGTTTTGTGG 0.996066 -527 GACCTAGTAACGTTGTATTTCAATAGTGAGGATAACATAAA 7 292 0 CGTTTTGTGG 0.996066 -309 *** ** * *** * Masking position 8 Map Score: 3.96392 Number of sites scoring better than the average of aligned sites = 85 Number in coding regions = 56 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 8 TCTTATTTTTCAAGTATCTCAACT 1 5 1 ATTTTTCAAG 0.82012 -381 AAAAGCAAAAAAGTTTCAAGATTTCAAATG 1 122 0 AAGTTTCAAG 0.984868 -264 TTTCTTCGAAAAGTTTCAAGAGGACGCGCC 2 195 0 AAGTTTCAAG 0.984868 -106 TCCTTTCAAGAATTTGCAAGATTATAGAAA 4 115 1 AATTTGCAAG 0.968477 -220 CAGAGGGGCGAAGTTGCAACTAAGCTAAAG 5 202 1 AAGTTGCAAC 0.928615 -399 TGCGCCTGGCAAGTTGCATGTTGCACTATA 5 282 1 AAGTTGCATG 0.966413 -319 TTTATGCCCTAATTTTCAAGCCCCGGTTTT 6 211 0 AATTTTCAAG 0.96218 -390 AATAACCTTCAAGTTACATGTGATATTTAT 7 459 1 AAGTTACATG 0.878671 -142 ********** Masking position 8 Map Score: 5.3103 Number of sites scoring better than the average of aligned sites = 365 Number in coding regions = 294 Number in noncoding regions = 71 Number of orfs with sites within 600 bp upstream = 63 Fraction of orfs with sites within 600 bp upstream = 0.0101189 Motif number 9 GCCACTTTGTAGACTTCATTTGAAATCTTGAAACT 1 106 1 AGACCATAAA 0.958514 -280 TTGCTTTTGAACAATTCATCTGAACCCGTAAAAGA 1 144 1 ACAACATAAC 0.728199 -242 GGCTAAGGGGAGAATTCCATTCAACGGAACGAGCT 1 203 1 AGAACCTAAC 0.957858 -183 CGGTATTTAAACACTCCCAATGAAAAAGCGTGATT 4 35 1 ACACCCTAAA 0.981152 -300 AAAAAAGAACAGACACCCTATAAAAATAGAATAAA 4 172 1 AGACCCTAAA 0.990197 -163 TTTATTGATGACACCTCCATTGAACAAGACTATTT 5 540 0 ACACCCTAAC 0.977241 -61 CACTCCAGAGAGACTTCGTGTCAAAGGTCTATAAT 6 410 1 AGACCGTAAA 0.951027 -191 TGAGGCTCATAGAGGACCCATCAAATCTGGGTATT 7 172 0 AGAGCCTAAA 0.977077 -429 GTGTCTCACGAGAGCGCCACTTAAAAAACGAAAAG 7 391 0 AGAGCCTAAA 0.977077 -210 **** ** * *** Masking position 11 Map Score: 2.19446 Number of sites scoring better than the average of aligned sites = 230 Number in coding regions = 164 Number in noncoding regions = 66 Number of orfs with sites within 600 bp upstream = 52 Fraction of orfs with sites within 600 bp upstream = 0.00835207 Motif number 10 CTTTCACGGTGTTGCACGGCTGTATAATAT 1 298 1 GTTGCACGGC 0.96822 -88 GACACCTATACATGCAACGCTTTTTTTGCG 4 271 1 CATGCAACGC 0.978737 -64 ATAGCTCGCTCATGCAAGGCACAAATACAG 5 58 1 CATGCAAGGC 0.988772 -543 CAACATGCAACTTGCCAGGCGCACTATAGT 5 275 0 CTTGCCAGGC 0.961134 -326 AATTGGCATATATGCTCGGCAAGGGAAATT 5 323 0 TATGCTCGGC 0.943456 -278 TCCTATCGTATTTGCACCGCTACGTAGTGT 6 21 1 TTTGCACCGC 0.964474 -580 AAGTCACGTGTATGCAAAGCCTATTTTATG 6 235 0 TATGCAAAGC 0.914764 -366 ********** Masking position 3 Map Score: 0.369909 Number of sites scoring better than the average of aligned sites = 279 Number in coding regions = 188 Number in noncoding regions = 91 Number of orfs with sites within 600 bp upstream = 79 Fraction of orfs with sites within 600 bp upstream = 0.0126887 Motif number 11 ********** No masking Map Score: 5.44519e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 AAGGGTAGGAAAAGAGAAGGAGAAAAGATACG 1 51 0 AAAGGAGGAG 0.99128 -335 AATATGGCAGAACGTGCAGAAGCAACAAAAAG 2 36 0 AACGGAGAAG 0.936635 -265 CTTAGTCTGAAAGGAGCCGGAGGCTGACCTGT 3 37 0 AAGGGCGGAG 0.967107 -264 TGTTTATTTAAAAGCGTAGGAGCTTC 4 319 1 AAAGGAGGAG 0.99128 -16 TCTTCAAAAAAATGCGAAGTAGTAGATATGAG 5 495 1 AATGGAGTAG 0.961833 -106 TTATTCGAGAAATGTGGATGAGATTTGTTAAA 7 485 1 AATGGATGAG 0.961833 -116 ATGTACTTATAATGTGTACGAGTATACAAGAC 7 516 1 AATGGACGAG 0.973924 -85 **** * ***** Masking position 2 Map Score: 0.309236 Number of sites scoring better than the average of aligned sites = 154 Number in coding regions = 113 Number in noncoding regions = 41 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 13 TAGGAAAAGAGAAGGAGAAAAGATACGAGA 1 48 0 GAAGGAGAAA 0.878739 -338 CAAAGTGGCAGAAAGAGCAATAAAGCAGGC 1 85 0 GAAAGAGCAA 0.958934 -301 AGAACGTGCAGAAGCAACAAAAAGTTGGTC 2 30 0 GAAGCAACAA 0.772016 -271 AGAAAAGAAAGCAAAAACAAAAAGAGCTCA 3 148 0 GCAAAAACAA 0.87386 -153 AGTGGAAAACGAAAAAAAAAAATTGGCTAA 3 186 1 GAAAAAAAAA 0.933598 -115 TTTAGTAAGCGAAAAAAAAAAAGAAAAAAA 4 145 1 GAAAAAAAAA 0.933598 -190 AAAAAAAAAAGAAAAAAAAAAGAACAGACA 4 157 1 GAAAAAAAAA 0.933598 -178 CAAGAAGGTCGAAAGGAAAACAAAAAAACG 5 16 1 GAAAGGAAAA 0.931686 -585 TATATGCTCGGCAAGGGAAATTACTGGTCG 5 315 0 GCAAGGGAAA 0.814134 -286 AAAAATGAGAGAAAAAGCAAATACCTAAAA 5 386 0 GAAAAAGCAA 0.935694 -215 TTGATCACGTGCAACGACAAACCCTAAATA 6 165 1 GCAACGACAA 0.67179 -436 CTTAAAATTAGAAAGTACAATAGTCTAGCG 6 490 0 GAAAGTACAA 0.767064 -111 AAGTAATACAGAAAAGGAAAACAAAAATAA 7 234 0 GAAAAGGAAA 0.874687 -367 TAAAAATATGGAAAGATAAAAGACCTAGTA 7 324 0 GAAAGATAAA 0.741395 -277 TTTTTCCTGTGAAGGAACAACTCGTGTCTC 7 419 0 GAAGGAACAA 0.917475 -182 TCCTTCACAGGAAAAAAAAATATAAAAATA 7 433 1 GAAAAAAAAA 0.933598 -168 ********** Masking position 3 Map Score: 11.9869 Number of sites scoring better than the average of aligned sites = 4773 Number in coding regions = 1989 Number in noncoding regions = 2784 Number of orfs with sites within 600 bp upstream = 1874 Fraction of orfs with sites within 600 bp upstream = 0.300996 Motif number 14 TTTTTCAAGTATCTCAACTTGAACCCGGAGTTTCT 1 16 1 ATTCACTTCC 0.914108 -370 GTAGCTGTAAATATCATCTTTTACGGGTTCAGATG 1 160 0 ATTCTCTTCG 0.936423 -226 TTGAATGGAATTCTCCCCTTAGCCGGGTAAAAGTA 1 192 0 TTTCCCTTCG 0.84969 -194 CGGCTGTATAATATACAATAGGCCGTTACAGCAGA 1 314 1 ATTAAATACG 0.854423 -72 TAGAAGCAGAATGTCTACTACGTCGAGGACCCTAC 5 90 0 ATTCACTACG 0.991758 -511 GGAAGCACTCATATCTACTACTTCGCATTTTTTTG 5 499 0 ATTCACTACG 0.991758 -102 AAGCATTTCAATGTCACATAATACGAACCATTGAT 6 135 1 ATTCCATACG 0.910456 -466 AACCCTAAATATAAAAACTAGGGCGTAAAAACCGG 6 184 1 ATAAACTACG 0.826908 -417 ACGACAAGAGATTTACACTACACCGCGTAAAGAAA 6 282 0 ATTAACTACG 0.971389 -319 TACAGTGCGTATATCCACTTGTACGACAAGAGATT 6 304 0 ATTCACTTCG 0.987979 -297 ** ** **** ** Masking position 9 Map Score: 1.73181 Number of sites scoring better than the average of aligned sites = 379 Number in coding regions = 291 Number in noncoding regions = 88 Number of orfs with sites within 600 bp upstream = 88 Fraction of orfs with sites within 600 bp upstream = 0.0141343 Motif number 15 ********** No masking Map Score: 5.44519e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0