AlignACE version 2.2 July 7, 1998 AlignACE -jOST.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YDL232W 313 bp YDL232W OST4 1-111 3.6-kDa protein, probably membrane-located #2 YGL226C-A 300 bp YGL226C-A OST5 1-21, 171-410 9.5-kDa zeta subunit of oligosaccharyltransferase complex #3 YJL002C 511 bp YJL002C OST1 1-1431 64-kDa, alpha subunit of oligosaccharyltransferase complex\; homologous to mammalian ribophorin I #4 YML019W 313 bp YML019W OST6 1-999 Putative new 37kDa subunit of N-oligosaccharyltransferase complex #5 YOR085W 300 bp YOR085W OST3 1-1053 34-kDa, gamma subunit of oligosaccharyl transferase glycoprotein complex #6 YOR103C 600 bp YOR103C OST2 1-402 16-kDa, epsilon subunit of oligosaccharyltransferase complex\; 40\% identical to vertebrate DAD1 protein Motif number 1 CTTTTGCTTGCTCTGTACTGGGTTT 1 299 0 TTTTGTTCTG 0.88251 -15 TTGGGTGGTCTTCTCTTTTCTTTGACGCGAAATT 2 168 1 TTCTCTTTTG 0.902951 -133 ATTTCAATGCTTTTCCCTTTTTTGCCACCGGATT 3 100 1 TTTTCTTTTG 0.940202 -412 TGATTTGGCGTTTTTGTTATATTGATAGATTTCT 3 172 0 TTTTTTATTG 0.828177 -340 ACACCGATCATTTTTGATGATTTGGCGTTTTTGT 3 189 0 TTTTTTTTTG 0.985373 -323 GCGCGTAATGTTTTTTATTTTCTGAAAGGTTCAA 3 370 1 TTTTTTTCTG 0.969865 -142 CATTAATTTGTTCTGCATACTTTGAACCTTTCAG 3 391 0 TTCTGTTTTG 0.902951 -121 TCAGCACCAATATTTTGTAGTTTGCGTCTTGTTC 3 484 0 TATTTTTTTG 0.949913 -28 TCACAAGCAGTATTTATTTATTTATTTACTTATT 4 133 1 TATTTTTTTA 0.84758 -181 TTTATTTACTTATTTATTCATTTATTCATTTCCT 4 153 1 TATTTTTTTA 0.84758 -161 ATTCATTTCCTTTTTAGTCTTTTATGCCAGTGAG 4 176 1 TTTTTTTTTA 0.951815 -138 CCAAGTTCCTATTTTATTTTTTTGCAGTTTTCAA 4 223 0 ATTTTTTTTG 0.899903 -91 CTGGCGTGGTTTCTTTTTCTTTTGTTTTCCGTGC 5 90 1 TTCTTTTTTG 0.975529 -211 ATCATTTATATTTTTCCCCATTTGGTTATAAGAG 6 75 1 TTTTTCTTTG 0.877207 -526 TGGGATTTTCATTTTAATTATTTACAGTAAAAGA 6 212 1 ATTTTTTTTA 0.724975 -389 TACGCGTGTTTTTTTCGTCATCTAAGTCTTAATG 6 298 0 TTTTTTTCTA 0.904184 -303 ATTTGGCGAGTACTTGGTCCTCTGCTATTTGCAC 6 406 1 TACTTTTCTG 0.842802 -195 CTATTGTATCTTTTTCATCCTTTAAAACACGTTA 6 512 0 TTTTTTTTTA 0.951815 -89 CTCGTTACAATTCTTTTTGTTGTGTGATAGCGTT 6 571 0 TTCTTTTGTG 0.843968 -30 ***** * **** Masking position 4 Map Score: 15.6531 Number of sites scoring better than the average of aligned sites = 5326 Number in coding regions = 2557 Number in noncoding regions = 2769 Number of orfs with sites within 600 bp upstream = 1670 Fraction of orfs with sites within 600 bp upstream = 0.26823 Motif number 2 GCTGCTACCATGTCACATTCCCATTCTGCTAGATT 1 61 0 TGACTTCATT 0.723421 -253 TTTTGCCTATTTACAGTATACGTTTTATGTGTACT 2 235 0 TTAGATCTTT 0.814461 -66 GGGATATCTCTCACTGCTTATGTTTTGCCTATTTA 2 257 0 TCTGTTTTTT 0.845773 -44 TAAAATACTGTTAAAGATTGCATTTCAATGCTTTT 3 79 1 TTAGTTCTTT 0.98088 -433 ATTTTGTCATTTTCACTTTTCCACTCGCAACGGAA 3 132 0 TTACTTCACT 0.673976 -380 TTTGTTATATTGATAGATTTCTTTTGAATTTTGTC 3 159 0 TGAGTTCTTT 0.941887 -353 GCAGAACAAATTAATGTTTGCTTTTTATTAAGCAA 3 409 1 TTTGTTCTTT 0.969134 -103 CACCAATATTTTGTAGTTTGCGTCTTGTTCCGAGC 3 479 0 TTAGTTCTCT 0.927589 -33 ATTTATTCATTTATTCATTTCCTTTTTAGTCTTTT 4 164 1 TTTCTTCTTT 0.9152 -150 TTTTATTTTTTTGCAGTTTTCAATTCGCGACAGTA 4 211 0 TTAGTTCATT 0.960138 -103 ACACAAGTGTTTACAGTTTTTGTTTAGT 5 4 0 TTAGTTTTTT 0.95115 -297 CGTGGCCCTTTTTATGCTTATTTTTCGTTGTAGGA 6 120 0 TTTGTTTTTT 0.922581 -481 AAAGTATCAGTCTTAGCTTTTTTTTGCTACGAACG 6 153 0 TCAGTTTTTT 0.899601 -448 AAAATGAAAATCCCAGTTTTTCATTCAGTTTCTTG 6 192 0 TCAGTTTATT 0.807945 -409 CGATAGAAGCTTGTTGGTTCTATTTGGCGAGTACT 6 385 1 TTTGTTTTTT 0.922581 -216 GTATTCCTCGTTACAATTCTTTTTGTTG 6 583 0 TTTCTTCATT 0.835174 -18 ** ** ** * *** Masking position 9 Map Score: 9.26488 Number of sites scoring better than the average of aligned sites = 3150 Number in coding regions = 1960 Number in noncoding regions = 1190 Number of orfs with sites within 600 bp upstream = 864 Fraction of orfs with sites within 600 bp upstream = 0.138773 Motif number 3 AGTCTCGGATTCTCATAAAAGCTTAATAAAT 1 218 1 TCTCTAAAAG 0.93885 -96 ATTTCAAATTTCGCGTCAAAGAAAAGAGAAG 2 177 0 TCGCTCAAAG 0.935412 -124 TGCAAATACTTTTCGAAGAAGGATGCAAGTA 2 208 1 TTTCAAGAAG 0.868759 -93 CGGAATCCGGTGGCAAAAAAGGGAAAAGCAT 3 106 0 TGGCAAAAAG 0.987741 -406 CTTACCCTGCTCGCGAAGAAGAGTAACACTA 3 336 0 TCGCAAGAAG 0.985137 -176 ATCGGGTACTTGTCAAAGAAGTAGCTTGCTT 3 438 0 TGTCAAGAAG 0.960555 -74 AGTAGCTCACTGGCATAAAAGACTAAAAAGG 4 184 0 TGGCTAAAAG 0.976629 -130 GTACTTCAATTGACTTAGAAGAAAAACATTA 5 189 1 TGACTAGAAG 0.793339 -112 AAATGATGCATCTCGAAAAAGCTTCAAGATC 6 51 0 TCTCAAAAAG 0.967322 -550 ATTCAGTTTCTTGCTACAAAGTATCAGTCTT 6 174 0 TTGCACAAAG 0.883955 -427 TCTTAATGGCTGGTAAAAAAGTCCCCGTTGC 6 275 0 TGGTAAAAAG 0.852533 -326 GACCAAGTACTCGCCAAATAGAACCAACAAG 6 394 0 TCGCAAATAG 0.903217 -207 **** ****** Masking position 10 Map Score: 8.87798 Number of sites scoring better than the average of aligned sites = 1183 Number in coding regions = 921 Number in noncoding regions = 262 Number of orfs with sites within 600 bp upstream = 236 Fraction of orfs with sites within 600 bp upstream = 0.0379056 Motif number 4 AAGTGTAATTGTCGTGTTTGTTTCGAAATACTCT 1 251 0 GTCGGTTTGC 0.965895 -63 GATCGGTGTTGAAGAGCTTGGCACTCTTAAAGGC 3 214 1 GAAGGCTTGC 0.992741 -298 TATCGTCGAGGACGAATGTGTACCCGTCTTTCCG 5 140 1 GACGATGTGC 0.978307 -161 TAAGTCAATTGAAGTACTTGTTACCTGTCTGGCG 5 172 0 GAAGACTTGC 0.981305 -129 TTCAGTGTTCGAAGAGCGTGTGCCTGGTATTGTG 5 242 0 GAAGGCGTGC 0.9943 -59 GTTTGATGCGGACGCGTGTGGTTCAGTGTTCGAA 5 263 0 GACGGTGTGC 0.989287 -38 GTTTGGGAGGAAGAGTTTGATGCGGACGCGTGT 5 278 0 GAAGGTTTGC 0.985839 -23 TGCGGTTCCAGTAGATCTTGAAGCTTTTTCGAGA 6 38 1 GTAGTCTTGC 0.869901 -563 TTTTTTTTGCTACGAACGTGGCCCTTTTTATGCT 6 137 0 TACGACGTGC 0.896772 -464 **** ***** * Masking position 9 Map Score: 6.88197 Number of sites scoring better than the average of aligned sites = 345 Number in coding regions = 288 Number in noncoding regions = 57 Number of orfs with sites within 600 bp upstream = 49 Fraction of orfs with sites within 600 bp upstream = 0.00787022 Motif number 5 ATGCCACACCTTGCGGTTGCTGCTACCATG 1 84 0 TTGCGGTTGC 0.994422 -230 TATGTTTCGTTTGCGGAAGCAAGCTGGTAT 4 31 0 TTGCGGAAGC 0.976509 -283 CCTTTTTGAATTGCGGTACCTTAAGTTATG 4 57 0 TTGCGGTACC 0.992095 -257 TATAGTTGCATCGCGCTTGCACGGAAAACA 5 112 0 TCGCGCTTGC 0.958589 -189 AGAGTAGAAGTTGCGGTTCCAGTAGATCTT 6 27 1 TTGCGGTTCC 0.995748 -574 AAAGTCCCCGTTGCGCTGCCCAAATGAAAC 6 259 0 TTGCGCTGCC 0.978029 -342 CGCCAGCCAATTGAGGATCCTAACCAATTC 6 334 1 TTGAGGATCC 0.929646 -267 ********** Masking position 1 Map Score: 6.30463 Number of sites scoring better than the average of aligned sites = 175 Number in coding regions = 144 Number in noncoding regions = 31 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 6 CTTCGAAAAGTATTTGCAATTTCAAATTTC 2 196 0 TATTTGCAAT 0.941201 -105 ATGTTTTGCCTATTTACAGTATACGTTTTA 2 243 0 TATTTACAGT 0.98503 -58 CTATTTTATTTTTTTGCAGTTTTCAATTCG 4 219 0 TTTTTGCAGT 0.962302 -95 TGTACACAAGTGTTTACAGTTTTTGTTTAG 5 12 0 TGTTTACAGT 0.960095 -289 TCATTTTAATTATTTACAGTAAAAGAATTT 6 220 1 TATTTACAGT 0.98503 -381 ATCGACTCGTTATTTCCAGTGTGATGAATT 6 359 0 TATTTCCAGT 0.974747 -242 GGTCCTCTGCTATTTGCACTTGTGTCGTAA 6 421 1 TATTTGCACT 0.959554 -180 ********** Masking position 8 Map Score: 4.87835 Number of sites scoring better than the average of aligned sites = 299 Number in coding regions = 189 Number in noncoding regions = 110 Number of orfs with sites within 600 bp upstream = 80 Fraction of orfs with sites within 600 bp upstream = 0.0128493 Motif number 7 ACCTTGCGGTTGCTGCTACCATGTCACATTC 1 76 0 TGCTGCTACA 0.950794 -238 GTAGTTTGCGTCTTGTTCCGAGCTAAAGAAG 3 471 0 TCTTGTTCCA 0.934765 -41 CCTGGTATTGTGTTGCTCCTACGTTAAAGTT 5 223 0 TGTTGCTCCA 0.986986 -78 CGCATCAAACTCTTCCTCCCAAAC 5 287 1 TCTTCCTCCA 0.978998 -14 AGAAGAGGCATTTTCCTACAACGAAAAATAA 6 107 1 TTTTCCTACA 0.944847 -494 CTTAGCTTTTTTTTGCTACGAACGTGGCCCT 6 146 0 TTTTGCTACA 0.975957 -455 TCATTCAGTTTCTTGCTACAAAGTATCAGTC 6 176 0 TCTTGCTACA 0.989184 -425 ********* * Masking position 11 Map Score: 2.19142 Number of sites scoring better than the average of aligned sites = 417 Number in coding regions = 327 Number in noncoding regions = 90 Number of orfs with sites within 600 bp upstream = 63 Fraction of orfs with sites within 600 bp upstream = 0.0101189 Motif number 8 CCAAATTTGGTCCATTACCCGGGGGTTAATA 1 184 0 TCCATTACCG 0.847763 -130 GAAAGATCTTTTCAGTGCTAGCCGAATACCG 2 85 1 TTCAGTGCAG 0.989435 -216 GCCACCGGATTCCGTTGCGAGTGGAAAAGTG 3 123 1 TCCGTTGCAG 0.881452 -389 GAAGACAGTATTCAGTACAAGACATAGTCCG 3 286 0 TTCAGTACAG 0.969368 -226 TTTTGCAGTTTTCAATTCGCGACAGTAGCTC 4 207 0 TTCAATTCCG 0.877201 -107 TTTTGTATGATTCAGTTCGCGGCTCTCATCT 4 288 0 TTCAGTTCCG 0.984608 -26 TTCTTTTGTTTTCCGTGCAAGCGCGATGCAA 5 106 1 TTCCGTGCAG 0.961353 -195 ACGCGTGTGGTTCAGTGTTCGAAGAGCGTGT 5 255 0 TTCAGTGTCG 0.898629 -46 GCTTTTATCCAGTTCTAGAGTAGAAGTT 6 8 1 TCCAGTTCAG 0.97988 -593 GAGTAGAAGTTGCGGTTCCAGTAGATCTTGA 6 28 1 TGCGGTTCAG 0.898791 -573 ******** ** Masking position 6 Map Score: 3.42989 Number of sites scoring better than the average of aligned sites = 487 Number in coding regions = 383 Number in noncoding regions = 104 Number of orfs with sites within 600 bp upstream = 91 Fraction of orfs with sites within 600 bp upstream = 0.0146161 Motif number 9 TACTGGGTTTCTCTACTGACTTGCAAGTGT 1 279 0 CTCTACTGAC 0.976179 -35 TTATGGCCCACTCTACGACCTGAAGTTAG 2 10 0 CTCTACGACC 0.984719 -291 TATTCGTAATCTCTACTACCGGTGGCTGAT 2 48 1 CTCTACTACC 0.987298 -253 TCGTCCCATCATCTTCTGCCTTATTTCTAC 2 118 1 ATCTTCTGCC 0.908833 -183 CAGGCACACGCTCTTCGAACACTGAACCAC 5 250 1 CTCTTCGAAC 0.976179 -51 AATGCCTCTTCTCTTATAACCAAATGGGGA 6 89 0 CTCTTATAAC 0.884355 -512 ********** Masking position 4 Map Score: 0.56989 Number of sites scoring better than the average of aligned sites = 404 Number in coding regions = 329 Number in noncoding regions = 75 Number of orfs with sites within 600 bp upstream = 64 Fraction of orfs with sites within 600 bp upstream = 0.0102795 Motif number 10 CAACCGCAAGGTGTGGCATAGATTATAGTAGT 1 95 1 GTGTGGCAAA 0.974395 -219 TCTCTACTACCGGTGGCTGATAAGTGCTGAAA 2 57 1 CGGTGGCTAA 0.965258 -244 CAACGGAATCCGGTGGCAAAAAAGGGAAAAGC 3 108 0 CGGTGGCAAA 0.991199 -404 GACAGTAGCTCACTGGCATAAAAGACTAAAAA 4 186 0 CACTGGCAAA 0.974395 -128 GAAACCACGCCAGTGCCATAGATTGCGTCAGT 5 71 0 CAGTGCCAAA 0.862982 -230 CTTGTTACCTGTCTGGCGGAAAGACGGGTACA 5 158 0 GTCTGGCGAA 0.962416 -143 AAGTCTTAATGGCTGGTAAAAAAGTCCCCGTT 6 277 0 GGCTGGTAAA 0.926342 -324 ATCCTCAATTGGCTGGCGTATACGCGTGTTTT 6 320 0 GGCTGGCGAA 0.986976 -281 ******** * * Masking position 10 Map Score: 1.29828 Number of sites scoring better than the average of aligned sites = 382 Number in coding regions = 274 Number in noncoding regions = 108 Number of orfs with sites within 600 bp upstream = 99 Fraction of orfs with sites within 600 bp upstream = 0.0159011 Motif number 11 ********** No masking Map Score: 3.86778e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: 3.86778e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 3.86778e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0