AlignACE version 2.2 July 7, 1998 AlignACE -jPCL.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YDL179W 600 bp YDL179W PCL9 1-915 PHO85 cyclin #2 YDL127W 600 bp YDL127W PCL2 1-840 G1 cyclin #3 YER059W 532 bp YER059W PCL6 1-1263 PHO85 cyclin #4 YGL134W 368 bp YGL134W PCL10 1-1302 PHO85 cyclin #5 YHR071W 600 bp YHR071W PCL5 1-690 G1\/S cyclin (weak) #6 YIL050W 600 bp YIL050W PCL7 1-858 PHO85 cyclin #7 YNL289W 600 bp YNL289W PCL1 1-840 G(sub)1 cyclin that associates with PHO85 #8 YPL219W 306 bp YPL219W PCL8 1-1479 PHO85 cyclin Motif number 1 TGATGCATGATCTATTTTCTTTTGGACAAATTT 1 77 0 TCTTTTTTTT 0.910089 -524 ACCAGCGTCACTAATTTTTTTTTTTATTGCTGC 1 286 1 CTTTTTTTTT 0.94654 -315 TCTACTTGAGCTGGTTTTTTTTTAGTGCAGCAA 1 312 0 CTTTTTTTTT 0.94654 -289 TAAATATGTGTCTCTTTGCTTCTGTATTTAAGC 1 431 1 TCTTTGTTCT 0.766125 -170 TATAGCTGGGCTAATTTTATTCTATAGCTGGCC 2 163 0 CTTTTTTTCT 0.958243 -438 CATCATAGAACTGTTTTTTTTTTTTGCAAAGTA 3 465 1 CTTTTTTTTT 0.94654 -68 TGTTAGTCATCTCGTTTCTTTTTCTAATGGTCG 5 35 0 CTTTTCTTTT 0.815532 -566 ACTTCCTAATTTATTCTTCTTCTTTATATAACA 5 149 0 TTTCTTTTCT 0.801815 -452 GGGAGAAACTTGCTTTTTCTTCTATTTGAGTAA 5 302 0 TGTTTTTTCT 0.830335 -299 TTTCTCCCTATTTATTTGGTTCTCCCTATTCAC 5 327 1 TTTTTGTTCT 0.900065 -274 ATTGGCATACTTTTTTATATTTTTTTCGTTTTG 5 371 1 TTTTATTTTT 0.678056 -230 TTATATTTTTTTCGTTTTGTTTTTGGTTTTCCT 5 385 1 TTTTTTTTTT 0.965314 -216 TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5 565 0 TTTTTTTTTT 0.965314 -36 ATTTATTTTTATTTTTCTTTTTTTT 5 586 0 TTTTTTTTTT 0.965314 -15 TTTTATTTTTTTTATTTCGTTCTGGGCGTTGTG 7 20 0 TTTTTCTTCT 0.900065 -581 CTTTCATCTATTTCTTTTATTTTTTTTATTTCG 7 34 0 TTTTTTTTTT 0.965314 -567 GAAGCTACCATTCCTTTTATTCTCCATAATAAC 7 398 0 TTTTTTTTCT 0.973024 -203 GTTTTTGTTATCGTTTTTGTTCTTGACAATGGA 7 545 0 TCTTTTTTCT 0.929174 -56 ** **** **** Masking position 5 Map Score: 15.6906 Number of sites scoring better than the average of aligned sites = 8850 Number in coding regions = 1631 Number in noncoding regions = 7219 Number of orfs with sites within 600 bp upstream = 1977 Fraction of orfs with sites within 600 bp upstream = 0.317539 Motif number 2 TCATAACTGCCAAGATAAAATTTGTTGGCA 1 153 1 CAAGATAAAA 0.936059 -448 TCATAACTGCCAAGATAAAATTTGTTGGCA 1 222 1 CAAGATAAAA 0.936059 -379 TGCAGCAATAAAAAAAAAAATTAGTGACGC 1 290 0 AAAAAAAAAA 0.937573 -311 TTATAAGACTAAAGAAAAAAACACTTAAGA 2 469 0 AAAGAAAAAA 0.945645 -132 CAATACTTTGCAAAAAAAAAAAACAGTTCT 3 471 0 CAAAAAAAAA 0.945645 -62 CTAGGAAAACCAAAAACAAAACGAAAAAAA 5 390 0 CAAAAACAAA 0.857744 -211 TAGGCATTACAAAGATAAAATAAGTTTTTA 5 536 1 AAAGATAAAA 0.926674 -65 TTTTAAAAAAAAAAAAAAAAAAAAAAAAAA 5 561 1 AAAAAAAAAA 0.937573 -40 AAAAAAAAAAAAAAAAAAAAAAAGAAAAAT 5 571 1 AAAAAAAAAA 0.937573 -30 AAAAAAAAAGAAAAATAAAAATAAAT 5 585 1 AAAAATAAAA 0.916034 -16 ACGAAATAAAAAAAATAAAAGAAATAGATG 7 33 1 AAAAATAAAA 0.916034 -568 CATCCATTGTCAAGAACAAAAACGATAACA 7 543 1 CAAGAACAAA 0.874759 -58 ********** Masking position 5 Map Score: 11.9733 Number of sites scoring better than the average of aligned sites = 11181 Number in coding regions = 1655 Number in noncoding regions = 9526 Number of orfs with sites within 600 bp upstream = 2060 Fraction of orfs with sites within 600 bp upstream = 0.330871 Motif number 3 AAAAAATTAGTGACGCTGGTTTCCGCGCAGCGCTAA 1 270 0 TGCGCTTCCC 0.951624 -331 CTATGAATGTCGATGCACTCTTCTACTGACCGCAAG 1 474 0 CGTGCCTCTC 0.985161 -127 CTTGTCCTTTCTTTGCGTATATCCACTTAAATATAT 1 522 0 CTTGCTACCC 0.760854 -79 CTCTTTGTGCGTATTTCTTCAGAATTAATA 1 581 0 TTTGCTTCTC 0.94777 -20 ACCGGCGCTATTTGCTACAATTAACTTA 3 515 0 CGCGCTTCTC 0.983576 -18 CTGGCTAAAACTATGCATAATACTTTTACTACTTAG 4 74 0 CTTGCATCTT 0.64724 -295 AGAATCGGATCGGTGCAATATACTCCGAGCTTCCCG 4 138 0 CGTGCATCTC 0.971257 -231 ATGGTCGCCTTTTTGCCTTTTTCCTCCCACG 5 6 0 TTTGCTTCCC 0.937057 -595 GGGCACTGCGCGATGCGTCATACTACTTGAATACAA 5 99 1 CGTGCATCTC 0.971257 -502 CACTATAAGCCTTTTCCCCCTACTTCCTAATTTATT 5 167 0 CTTTCCTCTC 0.884711 -434 AATATATATATTCTGCCAACTACCACGTTGTTACGG 5 250 0 TTTGCCTCCC 0.931229 -351 TTGAAGGACGTTATTCACTTTGCTCCTGTGTACGCT 6 170 0 TTTTCTTCTC 0.771589 -431 AGATCACCGCCTGTGCACTTTTCTACGGGCTCTTTT 6 244 1 CTTGCTTCTC 0.978412 -357 TTGAAGCCTGCGCTGCTATCCCCTGCTTTGTTTACA 6 424 0 CGTGCCCCTC 0.939374 -177 GTCGCTTTTGCGTCGCATGCCTCCGCGAAAAATTTC 7 311 0 CGCGCCCCCC 0.912507 -290 AATACAAATGTGACTCAAATTACTTCTTACAAAATT 8 59 0 TGCTCTTCTC 0.81697 -248 TGCCCTTCCGCGCCGCTCTTTCCTATCAAGGCGGTG 8 123 0 CGCGCTTCTT 0.839664 -184 GTAGGGAATTTTGCTCTGTATTCCCCTGTTTAATAT 8 162 1 TTCTCATCCC 0.512821 -145 ** *** ** ** * Masking position 6 Map Score: 11.6487 Number of sites scoring better than the average of aligned sites = 1572 Number in coding regions = 1222 Number in noncoding regions = 350 Number of orfs with sites within 600 bp upstream = 303 Fraction of orfs with sites within 600 bp upstream = 0.0486669 Motif number 4 GTAGTTAAACTTTTAAAGTAGGGTTAAAAT 1 3 0 TTTATGGTAA 0.831374 -598 GAGCTGGTTTTTTTTTAGTGCAGCAATAAAAAAAAAAA 1 300 0 TTTATCGAAA 0.827729 -301 GAAGGAATAATCTAAAACTCGAATAATATCAATGTTAA 3 106 1 TCTATGAAAA 0.978705 -427 TTGAATGGAATTTCAAAATAGAGGTAAAATCCCCAAAG 3 184 0 TTTATGGTAA 0.833819 -349 TATTATATAATCTTCGACTCGCATAATATAGGTATTCC 4 317 1 TCTATGAAAA 0.978682 -52 TTTCGTCTTTTCTCTCACTACCGTAACAACGTGGTAGT 5 230 1 TCTATCGAAA 0.942527 -371 ACTTGCTTTTTCTTCTATTTGAGTAACAACTAGGTTGC 5 290 0 TCTATGGAAA 0.988359 -311 ACTAAATGGGTCTTACACATGCATAAGAATTAGGTTAG 6 44 0 TCTAAGAAAA 0.705823 -557 TTCTACGGGCTCTTTTAATTGTATAACATGGACAGTGA 6 264 1 TCTATGAAAA 0.975506 -337 CATCTACGGTTCTTAAAATAGTACAACAAAAGTTAACA 6 502 1 TCTATGAAAA 0.977936 -99 ACGAACGACTGCTTACACTAGAGAAAAAT 6 582 1 GCTATGGAAA 0.918869 -19 TATTTCCCGATCTGGCATTCGCAGAACACTAGAGCCAG 7 212 0 TCTATGAAAA 0.978711 -389 TCGGGAAATATTTCCCAAAAGGGCAACAGCGGCACGAA 7 240 1 TTTAAGGAAA 0.833809 -361 *** * * * * ** * Masking position 7 Map Score: 7.56664 Number of sites scoring better than the average of aligned sites = 675 Number in coding regions = 494 Number in noncoding regions = 181 Number of orfs with sites within 600 bp upstream = 143 Fraction of orfs with sites within 600 bp upstream = 0.0229682 Motif number 5 AAATTTTATCTTGGCAGTTATGAATGGAGGCCA 1 143 0 TTGGCATTTA 0.890208 -458 AAATTTTATCTTGGCAGTTATGAATGGAGGCCA 1 212 0 TTGGCATTTA 0.890208 -389 ATAAAATTTGTTGGCAATATTGAAAATTCTTAA 1 236 1 TTGGCATATA 0.827008 -365 GCTTGACTACTTGTCCCTTGTAAGATTATCTAC 1 340 0 TTGTCCTTTA 0.972403 -261 ACAAGTTTTCTTGTCCTTTCTTTGCGTATATCC 1 534 0 TTGTCCTTTT 0.897359 -67 GTCTTATAAGTTCTCCTTTCTTTCACTTTATAA 2 490 1 TTCTCCTTTT 0.91249 -111 CACTTTATAATTCTCCTTTATAAAAGTAAGACC 2 513 1 TTCTCCTTTA 0.976757 -88 AAAAGCAAGTTTCTCCCTATTTATTTGGTTCTC 5 318 1 TTCTCCTATA 0.961207 -283 ATTTATTTGGTTCTCCCTATTCACTCGCATTTA 5 336 1 TTCTCCTATA 0.961207 -265 GCGATTCGCATTCTCAGTTGTTAGCTAGACGCC 7 104 0 TTCTCATTTA 0.939173 -497 ATTCCTTTTATTCTCCATAATAACGCCAAAATC 7 389 0 TTCTCCTATA 0.961207 -212 ****** ** * * Masking position 8 Map Score: 5.94266 Number of sites scoring better than the average of aligned sites = 353 Number in coding regions = 265 Number in noncoding regions = 88 Number of orfs with sites within 600 bp upstream = 71 Fraction of orfs with sites within 600 bp upstream = 0.0114038 Motif number 6 TAAATTAGCGCTGCGCGGAAACCAGCGTCA 1 266 1 CTGCGCGGAA 0.938048 -335 ATAGATCATGAGACGCGAAGCCCTATTTTA 2 22 1 AGACGCGAAG 0.903253 -579 CGTCTTTTGATGACGCGAAAAGTAGACTTC 2 205 1 TGACGCGAAA 0.933492 -396 ATTTTTCGTGTTACGCGAAGTCTACTTTTC 2 221 0 TTACGCGAAG 0.74813 -380 GGTCAATTCTCCGCTCGAAGATTTTTATAG 2 285 1 CCGCTCGAAG 0.884138 -316 CTAAATCATAACGCGCGGAATTCCAGTTAA 3 415 1 ACGCGCGGAA 0.912448 -118 TATGTATTAATCGCTCGGAAGTGA 4 5 0 TCGCTCGGAA 0.65401 -364 TGACAGGGCACTGCGCGATGCGTCATACTA 5 94 1 CTGCGCGATG 0.865882 -507 CCCAGAGATTAGGCGCGATAGATAGTAATA 6 342 0 AGGCGCGATA 0.869297 -259 AAATCGCGTCCGGCGCGAAATTTTTCGCGG 7 295 1 CGGCGCGAAA 0.992909 -306 CGTCGCATGCCTCCGCGAAAAATTTCGCGC 7 307 0 CTCCGCGAAA 0.792699 -294 CGGAGGCATGCGACGCAAAAGCGACTCGAA 7 322 1 CGACGCAAAA 0.775838 -279 GACGCAAAAGCGACTCGAAATGTCGGGAGC 7 333 1 CGACTCGAAA 0.911567 -268 TAGGAAAGAGCGGCGCGGAAGGGCAGCTGT 8 134 1 CGGCGCGGAA 0.988632 -173 ********** Masking position 6 Map Score: 7.19679 Number of sites scoring better than the average of aligned sites = 437 Number in coding regions = 199 Number in noncoding regions = 238 Number of orfs with sites within 600 bp upstream = 255 Fraction of orfs with sites within 600 bp upstream = 0.0409573 Motif number 7 ATGCATCATTCAATATGGAGCTCACACTGTATGCTA 1 102 1 CAATAGCACA 0.976731 -499 GAATGGAGGCCAAATTGTAGCATACAGTGTGAGCTC 1 119 0 CAAAAGCACA 0.991601 -482 AATTTGTTGGCAATATGGAGCTCACACTGTATGCTA 1 171 1 CAATAGCACA 0.976731 -430 GAATGGAGGCCAAATTGTAGCATACAGTGTGAGCTC 1 188 0 CAAAAGCACA 0.991601 -413 AATAGAGAGGTAAACTACTGCCGACAGGTGT 3 6 0 TAAATGCACA 0.894418 -527 ATAACTGGTTCAATACTTTGCAAAAAAAAAAAACAG 3 475 0 CAATTGCAAA 0.750737 -58 CGCATCTCCGCAAATGAGAGCGTACACAGGAGCAAA 6 152 1 CAAAAGCACA 0.991601 -449 GCGATGGGTCCAAAACGGTGTAAACAAAGCAGGGGA 6 406 1 CAAATGTACA 0.894418 -195 AATAGTACAACAAAAGTTAACAGACATTAATTACTG 6 518 1 CAAAAACACA 0.902938 -83 CGAGCTAGAACGAACGACTGCTTACACTAGAGAAAA 6 573 1 CGAATGCACA 0.956959 -28 CATAATAACGCCAAAATCTGCCCACAGCCTTGTAGC 7 371 0 CCAATGCACA 0.956959 -230 AAATGTGACTCAAATTACTTCTTACAAAATTAAATA 8 54 0 CAAATTCACA 0.902938 -253 **** *** *** Masking position 3 Map Score: 8.52599 Number of sites scoring better than the average of aligned sites = 381 Number in coding regions = 289 Number in noncoding regions = 92 Number of orfs with sites within 600 bp upstream = 77 Fraction of orfs with sites within 600 bp upstream = 0.0123675 Motif number 8 GCATACAGTGTGAGCTCCATATTGAATGAT 1 106 0 TGAGCTCCAT 0.971089 -495 TGCTACAATTTGGCCTCCATTCATAACTGC 1 133 1 TGGCCTCCAT 0.989444 -468 GCATACAGTGTGAGCTCCATATTGCCAACA 1 175 0 TGAGCTCCAT 0.971089 -426 TGCTACAATTTGGCCTCCATTCATAACTGC 1 202 1 TGGCCTCCAT 0.989444 -399 ATATATATCAGGGGATCCATACGGTGTGTT 6 93 1 GGGGATCCAT 0.974764 -508 TCATTGCATTTTGCATCCATAGGCATACTA 6 302 1 TTGCATCCAT 0.854378 -299 CTTTCTCATCGGGGATCCTTCTCTGTTGTT 8 202 0 GGGGATCCTT 0.892606 -105 ********** Masking position 6 Map Score: 2.7463 Number of sites scoring better than the average of aligned sites = 190 Number in coding regions = 165 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 9 TGATGAACCACTGATGTAGTTAAACTTTTAAAG 1 23 0 CTGTGTATAA 0.982626 -578 TGTCTCTTTGCTTCTGTATTTAAGCATTTGGGC 1 439 1 CTTTGTATAA 0.960217 -162 CACGGCATTCCAGCTGTAAAAAACCAGCAGATA 2 116 1 CAGTGTAAAA 0.84169 -485 TAAAAAGTTGCTGCCGTATTGAAATTGCTCTTG 2 569 0 CTGCGTATAA 0.960504 -32 CTTTTGTAGTAAAAAGTTGCTGC 2 588 0 CTTTGTATAA 0.960217 -13 TACTTAGAGTCATACGTATTAAAAAAGGTATTT 4 48 0 CATCGTATAA 0.82454 -321 TCTCAGCGATGTTTTGTAGGAAATCACTTAGAA 4 204 1 GTTTGTAGAA 0.841861 -165 AAGACGGGTTGTGTTGTATTCAAGTAGTATGAC 5 115 0 GTGTGTATAA 0.937979 -486 TGGATGATTGCTGATGTACGCAATAGTAATTCC 7 516 0 CTGTGTAGAA 0.979014 -85 CGCGGAAGGGCAGCTGTAGGGAATTTTGCTCTG 8 147 1 CAGTGTAGAA 0.9548 -160 *** **** * ** Masking position 7 Map Score: 1.77596 Number of sites scoring better than the average of aligned sites = 454 Number in coding regions = 344 Number in noncoding regions = 110 Number of orfs with sites within 600 bp upstream = 80 Fraction of orfs with sites within 600 bp upstream = 0.0128493 Motif number 10 GACACATATTTACCACGTTGCATGAATGTC 1 413 0 TACCACGTTG 0.98321 -188 AAGTTACAGCTACCACTTAGCGTGTCTGCG 2 365 0 TACCACTTAG 0.97363 -236 CCAGTTAATATATTACGTAGTCATCCCTCA 3 437 1 TATTACGTAG 0.85101 -96 ATAATACTTTTACTACTTAGAGTCATACGT 4 64 0 TACTACTTAG 0.925793 -305 TTCTGCCAACTACCACGTTGTTACGGTAGT 5 246 0 TACCACGTTG 0.98321 -355 TCAATCCCATTACCATGTAGGCCTATTGAC 7 459 0 TACCATGTAG 0.944145 -142 ********** Masking position 5 Map Score: 0.485849 Number of sites scoring better than the average of aligned sites = 175 Number in coding regions = 136 Number in noncoding regions = 39 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 11 TGGCCTCCATTCATAACTGCCAAGATAAAATTTG 1 143 1 TAAACTGAAG 0.781849 -458 TGGCCTCCATTCATAACTGCCAAGATAAAATTTG 1 212 1 TAAACTGAAG 0.781849 -389 GTAGATAATCTTACAAGGGACAAGTAGTCAAGCC 1 340 1 TAAAGGGAAG 0.750771 -261 AGACTAAAGAAAAAAACACTTAAGAAGCACTTAA 2 460 0 AAAACACAAG 0.963497 -141 AAAGGAGAACTTATAAGACTAAAGAAAAAAACAC 2 475 0 TAAAGACAAG 0.963497 -126 GGTTGAACTGATTGAACACCAAAGCATATCGATC 4 275 0 ATAACACAAG 0.809914 -94 CGGTAGTGAGAGAAAAGACGAAATTACAACAACA 5 219 0 AAAAGACAAT 0.802359 -382 AAAGGAAAACTTAGAAGACGGAAGAGTGCATTGT 5 436 0 TAAAGACAAG 0.963497 -165 GATGCGCGCAATAGAAGACACAGGCAATAATAGA 5 477 1 AAAAGACAGG 0.769973 -124 ATGAGAGCGTACACAGGAGCAAAGTGAATAACGT 6 165 1 AAAGGAGAAG 0.723669 -436 TTAATTACTGTAATCAGACTAAAGCAAACCGAGC 6 544 1 TACAGACAAG 0.769973 -57 CGGACGCGATTTTTAACACGAAATTCTTGTTCGT 7 273 0 TTAACACAAT 0.395894 -328 TAATTCCAAGACACAAGAGTTAAGGACAAGCTTA 7 489 0 AAAAGAGAAG 0.953812 -112 TCAATTATACAAATAACAGTAAAGTAATAAA 7 580 1 AAAACAGAAG 0.953812 -21 CGTTAAACTATGAAAACACGTAATTATGC 8 6 0 TAAACACAAT 0.802359 -301 TTAATATCAAAAACAACAGAGAAGGATCCCCGAT 8 191 1 AAAACAGAAG 0.953812 -116 * * ***** *** Masking position 12 Map Score: 1.95012 Number of sites scoring better than the average of aligned sites = 688 Number in coding regions = 467 Number in noncoding regions = 221 Number of orfs with sites within 600 bp upstream = 185 Fraction of orfs with sites within 600 bp upstream = 0.0297141 Motif number 12 CTCCATATTGCCAACAAATTTTATCTTGGCAGT 1 158 0 CAAAAATTTA 0.945772 -443 TTCAATATTGCCAACAAATTTTATCTTGGCAGT 1 227 0 CAAAAATTTA 0.945772 -374 TCATAGATCTCTAATAACATATATTTAAGTGGA 1 504 1 CAAAACATTA 0.899993 -97 TCAAAAGACGCTATAAAAATATAGCTGGGCTAA 2 182 0 CATAAAATTA 0.914581 -419 GTAGTATCTGCCAAAAAAATCCACCTGCACCAG 2 252 0 CAAAAAATCA 0.889291 -349 CTAGCCAGGCCTATAAAAATCTTCGAGCGGAGA 2 292 0 CATAAAATTT 0.748511 -309 AACTAGGTTGCCAAGAATATATATATTCTGCCA 5 268 0 CAAAATATTA 0.858596 -333 AAAAACAAAACGAAAAAAATATAAAAAAGTATG 5 376 0 CAAAAAATTA 0.974695 -225 CAATAATACCCTAATAAATTCTATTATTGCCTG 5 497 0 CAAAAATTTA 0.945772 -104 TGCAAAACCTCAAACAAAATCTTTTAAATATGT 8 267 0 CAAAAAATTT 0.914581 -40 * ** ***** ** Masking position 7 Map Score: 1.16411 Number of sites scoring better than the average of aligned sites = 260 Number in coding regions = 149 Number in noncoding regions = 111 Number of orfs with sites within 600 bp upstream = 71 Fraction of orfs with sites within 600 bp upstream = 0.0114038 Motif number 13 GCGTCACTAATTTTTTTTTTTATTGCTGCACTAAA 1 290 1 TTTTTTTTAG 0.806729 -311 GATTTTAGCCTTACATTTCTGAGTGAGAATGCCAG 2 55 1 TTCATTCTAG 0.903201 -546 CACATTCTTGTTACATCTGTCACGGCATTCCAGCT 2 96 1 TTCATTGTAG 0.864969 -505 GCACCGGGTCTTACTTTTATAAAGGAGAATTATAA 2 517 0 TTCTTTATAG 0.969861 -84 TAGACTACTCTTGTTTGTATATATGTAAGAATCGT 3 43 1 TTTTTTATTG 0.83246 -490 GCCATTTTTCTTTCCTTTCTCAGCGATGTTTTGTA 4 187 1 TTCCTTCTAG 0.807815 -182 GTCATCTCGTTTCTTTTTCTAATGGTCGCCTTTTT 5 28 0 TTTTTTCTAG 0.94313 -573 TTTATTCTTCTTCTTTATATAACAGAAGACGGGTT 5 138 0 TTTTTTATAG 0.963608 -463 AAACTTGCTTTTTCTTCTATTTGAGTAACAACTAG 5 295 0 TTCTTTATTG 0.857928 -306 CTTCTAAGTTTTCCTTTTATTAAGGATGCGCGCAA 5 453 1 TTCTTTATAG 0.969861 -148 TCATATGTATTTATATATATCAGGGGATCCATACG 6 81 1 TTTATTATAG 0.924574 -520 GATATACTTTTTGTATATATAAAGGTTTGAGATGT 6 459 0 TTTATTATAG 0.924574 -142 GTATAATTGATTGTTTTTGTTATCGTTTTTGTTCT 7 555 0 TTTTTTGTAG 0.919259 -46 TACTTTACTGTTATTTGTATAATTGATTGTTTTTG 7 571 0 TTTTTTATAG 0.963608 -30 ** *** *** * * Masking position 8 Map Score: 7.70683 Number of sites scoring better than the average of aligned sites = 574 Number in coding regions = 341 Number in noncoding regions = 233 Number of orfs with sites within 600 bp upstream = 175 Fraction of orfs with sites within 600 bp upstream = 0.0281079 Motif number 14 CTCACACTGTATGCTACAATTTGGCCTCCA 1 122 1 ATGCTACAAT 0.969199 -479 CTCACACTGTATGCTACAATTTGGCCTCCA 1 191 1 ATGCTACAAT 0.969199 -410 AGCTGCCCAAATGCTTAAATACAGAAGCAA 1 446 0 ATGCTTAAAT 0.818385 -155 CAGAAATGTAAGGCTAAAATCCGCTAAAAT 2 46 0 AGGCTAAAAT 0.951276 -555 CCGGCGCTATTTGCTACAATTAACTTAACT 3 512 0 TTGCTACAAT 0.920178 -21 CAAAAATATCTGGCTAAAACTATGCATAAT 4 89 0 TGGCTAAAAC 0.827871 -280 ATAGCAGCGCAGGCTTCAACATCTCAAACC 6 441 1 AGGCTTCAAC 0.924836 -160 GAGCCAAATGAGGCTACAAGGCTGTGGGCA 7 359 1 AGGCTACAAG 0.948088 -242 ********** Masking position 8 Map Score: 0.589328 Number of sites scoring better than the average of aligned sites = 404 Number in coding regions = 298 Number in noncoding regions = 106 Number of orfs with sites within 600 bp upstream = 95 Fraction of orfs with sites within 600 bp upstream = 0.0152586 Motif number 15 TTTAGTCTTATAAGTTCTCCTTTCTTTCAC 2 486 1 TAAGTTCTCC 0.958429 -115 TCGCATAATATAGGTATTCCATGCGCAAAT 4 335 1 TAGGTATTCC 0.939241 -34 CCCTATTTATTTGGTTCTCCCTATTCACTC 5 332 1 TTGGTTCTCC 0.965328 -269 CGTTTTGTTTTTGGTTTTCCTAGGTTCGAT 5 397 1 TTGGTTTTCC 0.971085 -204 TTCCGTCTTCTAAGTTTTCCTTTTATTAAG 5 447 1 TAAGTTTTCC 0.96529 -154 TGACCTTATATATGTTTTCCTATCGCTATA 7 433 0 TATGTTTTCC 0.940374 -168 ********** Masking position 5 Map Score: 0.550429 Number of sites scoring better than the average of aligned sites = 222 Number in coding regions = 166 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331