AlignACE version 2.2 July 7, 1998 AlignACE -jPDR.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YBL005W 340 bp YBL005W pdr3 1-2931 Pleiotropic drug resistance protein 3 #2 YDR406W 600 bp YDR406W PDR15 1-4590 probable multidrug resistance transporter #3 YGL016W 300 bp YGL016W pdr6 1-3246 #4 YGL013C 556 bp YGL013C PDR1 1-3207 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type #5 YHR064C 300 bp YHR064C PDR13 1-1719 Hsp70 Protein #6 YIL013C 568 bp YIL013C PDR11 1-4236 Putative member of the ABC family of membrane transporters #7 YNL264C 300 bp YNL264C PDR17 1-1053 Pleiotropic Drug Resistance #8 YNL231C 480 bp YNL231C PDR16 1-1056 Pleiotropic Drug Resistance #9 YOR153W 600 bp YOR153W pdr5 1-4536 multidrug resistance transporter #10 YOR328W 600 bp YOR328W PDR10 1-4695 Putative ABC transporter highly similar to Pdr5p #11 YPL058C 600 bp YPL058C PDR12 1-4536 multidrug resistance transporter Motif number 1 GAGGAGGCAGCTCCGCGGAAACAAGGGCAGCG 1 114 0 CTCCGCGGAC 0.991522 -227 TCATTTATTATTCCGCGGAAAGTCCGAGCGGC 1 147 0 TTCCGCGGAG 0.997972 -194 TCAGGGTCGCTTCCGCGGGATGCCATGCACGG 2 158 1 TTCCGCGGAG 0.997971 -443 ATGCGGACGGCTCCGCGCCACTGTCTCCGCAG 2 194 0 CTCCGCGCAT 0.958503 -407 GCTCGAGACTCTCCGCGGAACGAGCATGCGGA 2 219 0 CTCCGCGGAG 0.999228 -382 ATAAAATTATCTCAGCGCGATGGTGAGAATGT 3 68 0 CTCAGCGCAG 0.920096 -233 TCATAACTCATTCCGCGTAATGGGAGCGGTAA 5 169 1 TTCCGCGTAG 0.96769 -132 TGCTTTCTTTCTCCGCGGAATGACTGGACCCG 8 56 0 CTCCGCGGAG 0.999229 -425 CGGACGTTTTCTCGGCGGCAAGGTTGTGTCGT 9 20 0 CTCGGCGGAG 0.990839 -581 AGTCCACTCGTTCCGTGGGAAGCAATCGACCG 9 64 0 TTCCGTGGAG 0.990708 -537 GCATGAGCGATTCCGCGGAAAGAGAGGGGCAG 9 107 0 TTCCGCGGAG 0.997972 -494 AATGTTGTGGCACCGCGGCATGAGCGATTCCG 9 124 0 CACCGCGGAG 0.99164 -477 GGACTCGTGATTCCGTGGAAAGGTCAGATCTG 9 225 1 TTCCGTGGAG 0.990708 -376 AGAGAAATGTCTCCGCGGAACTCTTCTACGCC 9 287 1 CTCCGCGGAT 0.992865 -314 AACTCTTCTACGCCGTGGTACGATATCTGTTG 9 305 1 CGCCGTGGAG 0.974435 -296 ACTATAAACGCTCCGTGGAATGCGCTTTTAGG 10 193 1 CTCCGTGGAG 0.996453 -408 ******** * * Masking position 10 Map Score: 44.7999 Number of sites scoring better than the average of aligned sites = 42 Number in coding regions = 18 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 2 TGCCCTTGTTTCCGCGGAGCTGCCTCCTCT 1 117 1 TCCGCGGAGC 0.996512 -224 CATTTATTATTCCGCGGAAAGTCCGAGCGG 1 148 0 TCCGCGGAAA 0.992319 -193 TGCATGGCATCCCGCGGAAGCGACCCTGAA 2 157 0 CCCGCGGAAG 0.958337 -444 TGCACGGATGCCTGCGGAGACAGTGGCGCG 2 183 1 CCTGCGGAGA 0.970872 -418 GCATGCTCGTTCCGCGGAGAGTCTCGAGCG 2 222 1 TCCGCGGAGA 0.99643 -379 GTGGCGCTTCTCTGCGGTGAATTCTGTGCG 6 163 0 TCTGCGGTGA 0.939554 -406 ACTTTTCCTGTCTGCGGATCTCCTGGTTTG 6 293 1 TCTGCGGATC 0.84841 -276 GAGAGCAGGATCTGCGGAAAATACTTCGTA 6 362 0 TCTGCGGAAA 0.9695 -207 GTCCAGTCATTCCGCGGAGAAAGAAAGCAA 8 59 1 TCCGCGGAGA 0.99643 -422 CGAGAAAACGTCCGTGGAGAACCATTCGGT 9 38 1 TCCGTGGAGA 0.975155 -563 TCGATTGCTTCCCACGGAACGAGTGGACTG 9 67 1 CCCACGGAAC 0.850425 -534 CATGAGCGATTCCGCGGAAAGAGAGGGGCA 9 108 0 TCCGCGGAAA 0.992319 -493 AATCGCTCATGCCGCGGTGCCACAACATTT 9 127 1 GCCGCGGTGC 0.900789 -474 GACTCGTGATTCCGTGGAAAGGTCAGATCT 9 226 1 TCCGTGGAAA 0.945231 -375 GTAGAAGAGTTCCGCGGAGACATTTCTCTT 9 286 0 TCCGCGGAGA 0.99643 -315 AAAAGCGCATTCCACGGAGCGTTTATAGTG 10 192 0 TCCACGGAGC 0.961773 -409 CCTTTATCAGTCCGTGGAACAAAGCCACGG 10 261 0 TCCGTGGAAC 0.944153 -340 ATACCGAATCCCTGCGGTGGACGTGGCTAA 11 240 0 CCTGCGGTGG 0.736138 -361 ********** Masking position 6 Map Score: 36.4864 Number of sites scoring better than the average of aligned sites = 211 Number in coding regions = 117 Number in noncoding regions = 94 Number of orfs with sites within 600 bp upstream = 62 Fraction of orfs with sites within 600 bp upstream = 0.00995824 Motif number 3 CTGAAGACACAAACACAGGAAATACATAAATACATTAATGAG 1 229 0 AAAAAAAAAA 0.983622 -112 GCGCGAACAAAAATAAAAAAAGAACAGAAATACAGGCCACCT 2 80 0 AAAAAAAAAA 0.983622 -521 TCAGCCAAGAATATACAGAAAAGAATCCAAGAAACTGGAAG 4 526 1 AAAAAATAAA 0.889069 -31 GAATGGCTCGAGAAACAAATAGGAAACGAATAAGAAATGATA 5 129 0 AAATAAAAAA 0.947613 -172 TTCGACGAAGAAAAAGAGCTAAAATATGAATACTTCGTAAAT 5 223 0 AAATAAAAAA 0.947613 -78 CTCCATATTGAGTGAAAGGAAAAATAAGAAAAGTAAATAGAA 7 136 0 AAAAAAAAAA 0.983622 -165 TTCACTCAATATGGAGTGGAAAGAGAACAATAGAGGGATTAA 7 162 1 AATAAAAAAA 0.811209 -139 AAAAAAAAAGACCCTGAAAAATCACACAAAGAAAGCACAAGA 7 257 1 ATAAAAAAAA 0.924175 -44 CACACAAAGAAAGCACAAGAAGAAGAACAAAA 7 279 1 AAAAAAAAAA 0.983622 -22 CATAAAAATTACTAAGACGGAAGACAAAAAGATGACGCGCAA 8 129 0 AAAGAAAAAA 0.890694 -352 AGTCGGGTGGAATGAAAAAAATCATAAAAATTACTAAGACGG 8 151 0 AAAAAAAAAT 0.811209 -330 GAACAGTTAGAAACAAAATAAGGATTGAAATATTTTTCTAAC 8 385 0 AAAAAATAAA 0.889069 -96 CACTTTATATAAAAAAAATTACAAAAGCAAAAA 8 458 1 AAATAAAAAA 0.947613 -23 TTTGGATTTCATTCTAAGGTATGATAATAAAAGCGAACAGCC 9 405 0 ATATAAAAAA 0.785911 -196 TGCGGAAGACAGGGAGAAAAAATAAAAAAAAAGTCACGCGTA 10 133 1 AAAAAAAAAA 0.983622 -468 CAGGTGTATTATTAATACGAACAAAATAAAAATATGCCGACC 10 351 0 AAAAAAAAAA 0.983622 -250 TATACCGGAAACGTTTACTAAGTATAGAAATATAATAACGCT 10 524 0 ATAAAAAAAA 0.924175 -77 GGGAAAACAGAGAGAAAAAAAGCAGAAGAATATATTGATTGA 11 503 0 AAAAAAAAAA 0.983622 -98 TTTTTTATTAATAAGAACAATAACAATAAATCTGTAAA 11 573 0 AAAAAAAAAA 0.983622 -28 * * * ** * * ** * Masking position 11 Map Score: 23.7916 Number of sites scoring better than the average of aligned sites = 3922 Number in coding regions = 1483 Number in noncoding regions = 2439 Number of orfs with sites within 600 bp upstream = 878 Fraction of orfs with sites within 600 bp upstream = 0.141022 Motif number 4 AATCTCATTAATGTATTTATGTATTTCCTGTG 1 226 1 ATTATTATGT 0.940222 -115 GTGTTTAGCAATATCTATATGTTCTGAAGTTT 3 235 0 ATTCTTATGT 0.919401 -66 ACTCCTGGTAATGTCTATATGGCCGCTATGGT 4 443 0 ATTCTTATGG 0.805825 -114 TCTTGGATTCTTTTCTGTATATTCTTGGCTGA 4 526 0 TTTCTTATAT 0.790396 -31 ACTTAGAAATATTTATCTATATGTTCATATAT 5 69 1 ATTATTATAT 0.952658 -232 ATATTGATAGATGTATATATGAACATATAGAT 5 83 0 ATTATTATGA 0.764189 -218 CATGCGATATATCTCTCTATATATTGCCAGAT 8 208 1 ATTCTTATAT 0.955786 -273 ATATATATAAATATATATATATTCAGACAATG 8 305 0 ATTATTATAT 0.499337 -176 ATATACATACATATATATATATAAATATATAT 8 319 0 ATTATTATAT 0.499337 -162 ATATATATGTATGTATATATATCAGTTCTAGA 8 333 1 ATTATTATAT 0.71678 -148 CATCACAATTATATATGTATAGGAGAGGCCTT 9 360 0 ATTATTATAG 0.881561 -241 CTAGTTGCCAATTTATTTATAATTAGAATAAC 9 507 0 ATTATTATAA 0.836804 -94 AGTGCGCCTTATGTAAGTATATAAGGAAGGAC 10 433 1 ATTAATATAT 0.699806 -168 GGATTTGTTGATATATTTATATGATTAACATT 11 332 0 ATTATTATAT 0.570385 -269 GTTCTTAGTCTTTTCTTTATATGATAAAGAGA 11 409 0 TTTCTTATAT 0.790273 -192 ** *** ***** Masking position 9 Map Score: 10.4239 Number of sites scoring better than the average of aligned sites = 4124 Number in coding regions = 342 Number in noncoding regions = 3782 Number of orfs with sites within 600 bp upstream = 593 Fraction of orfs with sites within 600 bp upstream = 0.0952457 Motif number 5 TTGCGCGAACAAAAATAAAAAAAGAACAGAAAT 2 91 0 AAAAAAAAAA 0.812671 -510 TTGTTCGCGCAAAGAGCAAGAACATTGGTTGCT 2 112 1 AAAAAAGAAC 0.883513 -489 GCGACCCTGAAAATAATAAGTAAAGCAACCAAT 2 135 0 AAAAAAGTAA 0.712392 -466 CATCGCGTGAAAAATTTGAGAAAAAGCTCGAAC 3 164 1 AAATGAGAAA 0.777775 -137 CAAAAACTAAGAATAAGAGACTAG 3 287 0 AAAAAAGAAT 0.735498 -14 AGCGCCAAGGAACGAAAAAGAAATGAGTCTCGT 4 190 1 AACAAAGAAA 0.939243 -367 TTTAGTTATTAAACGAGAAGAAACGAGCCCTGA 4 222 1 AAAGAAGAAA 0.921689 -335 ACAAATAGGAAACGAATAAGAAATGATAGGCAA 5 124 0 AACAAAGAAA 0.939243 -177 CCCGTTTACGAACTAATGAGAAAAGGGTTTAAG 6 462 0 AACAGAGAAA 0.948092 -107 TGAGTGAAAGGAAAAATAAGAAAAGTAAATAGA 7 137 0 GAAAAAGAAA 0.78592 -164 GTAATGTGCTAAAAAAAGAGAAATGTCTCCGCG 9 271 1 AAAAGAGAAA 0.976136 -330 CTTTTGCGGAAGACAGGGAGAAAAAATAAAAAA 10 129 1 AGAAGAGAAA 0.812644 -472 CAGGGAGAAAAAATAAAAAAAAAGTCACGCGTA 10 142 1 AAAAAAAAAA 0.812671 -459 CTTTACGGAAAAAAATCGAGAAATTCCGGCGAA 11 124 0 AAAAGAGAAA 0.976136 -477 GCCATAGCCGAAAGATCGAAAAAGTAGCAGATC 11 164 0 AAAAGAAAAA 0.836749 -437 TAATCATAAGAACCGTCGAGAAAATGTGATACC 11 265 0 AACGGAGAAA 0.861288 -336 AGAATTGCCTAAAAGGTAAGAAATAATCATAAG 11 288 0 AAAGAAGAAA 0.921689 -313 CATATAAAGAAAAGACTAAGAACGATAATAGTA 11 418 1 AAAAAAGAAC 0.883513 -183 GTAACTGGGAAAACAGAGAGAAAAAAAGCAGAA 11 518 0 AAAAGAGAAA 0.976136 -83 *** * ****** Masking position 9 Map Score: 12.608 Number of sites scoring better than the average of aligned sites = 3237 Number in coding regions = 1700 Number in noncoding regions = 1537 Number of orfs with sites within 600 bp upstream = 1090 Fraction of orfs with sites within 600 bp upstream = 0.175072 Motif number 6 TCCAGAACAACAGGCGCTGCCCTTGTTTCCGC 1 100 1 CGGCCTGCCC 0.94771 -241 GCGGCAGAGGAGGCAGCTCCGCGGAAACAAGG 1 120 0 AGCACTCCGC 0.627348 -221 TTTGTGTCTTCAGGAGCCTTCCAAAGCAACCA 1 258 1 CGGACCTTCC 0.932501 -83 ACAGAAATACAGGCCACCTTCCAGGGCAGGGG 2 67 0 AGCCCCTTCC 0.769316 -534 CTGTCTCCGCAGGCATCCGTGCATGGCATCCC 2 174 0 AGCACCGTGC 0.912287 -427 GAGCATGCGGACGGCTCCGCGCCACTGTCTCC 2 198 0 AGGCCCGCGC 0.946073 -403 TACCTTAACCCCGGCACCGTGCGTTGCAGATC 2 267 0 CGGCCCGTGC 0.991132 -334 AATATATAAGCAGGAGCTCTCTACCTGGACCA 2 394 1 CGGACTCTCT 0.770889 -207 TCTCTAAGGGAAGGCACCGTCTAGGACAGTGC 6 66 1 AGGCCCGTCT 0.827671 -503 TAAAGGATGCCCGGCACTGTCCTAGACGGTGC 6 79 0 CGGCCTGTCC 0.966099 -490 GGATATCCCCCCGCAGCCTTCTCCGTCCGTTT 6 117 1 CGCACCTTCT 0.645195 -452 TAGGTGAGAGCAGGATCTGCGGAAAATACTTC 6 365 0 CGGACTGCGG 0.715424 -204 CGCGGAATGACTGGACCCGTGGGAAATCGCAG 8 43 0 CGGACCGTGG 0.925742 -438 CCGGAAGCAACGGCATCCCTGCTTATAAGCGA 8 89 1 CGCACCCTGC 0.973688 -392 AAACTTAAGACTGCCCCTCTCTTTCCGCGGAA 9 97 1 CGCCCTCTCT 0.767081 -504 GGAAAACTAACTGGCTCCCCGCTTTTGCATCT 10 16 1 CGGCCCCCGC 0.984232 -585 GCTCATCAGACTGACACCCTGCATCCGTTAAG 11 86 1 CGACCCCTGC 0.931656 -515 AAATGTGATACCGAATCCCTGCGGTGGACGTG 11 245 0 CGAACCCTGC 0.894338 -356 * *** ****** Masking position 7 Map Score: 7.96026 Number of sites scoring better than the average of aligned sites = 1025 Number in coding regions = 778 Number in noncoding regions = 247 Number of orfs with sites within 600 bp upstream = 198 Fraction of orfs with sites within 600 bp upstream = 0.0318021 Motif number 7 TATACTACTGTTAAGAACATCACATCACTAATA 2 497 1 TTAGAACTCC 0.832134 -104 TCGAACTATTTGTAGCACTTCACTGTATTGCTA 3 191 1 TGTGCACTCC 0.979765 -110 TTGGCGCTATTTTCGTGCATCCCGTAATTGCCG 4 165 0 TTTGTGCTCC 0.887706 -392 AAGAGCTTTAATTAGCGCCTCTTATTGCCACTC 4 339 0 ATTGCGCTCT 0.832102 -218 AAAAAAGACAATTTGCACATCACTTGCTAACTA 4 487 1 ATTGCACTCC 0.968546 -70 TAGTTACTTATTTTGCACATCTTTTACCGCTCC 5 191 0 TTTGCACTCT 0.923275 -110 CCGTTTTCGTTTAGGCACTTCGCACAGAATTCA 6 143 1 TTAGCACTCC 0.984354 -426 TGGCCGTCTATGTGGCGCTTCTCTGCGGTGAAT 6 171 0 TGTGCGCTCC 0.982483 -398 GACAAAAAGATGACGCGCAACGCGAAAATCGCT 8 116 0 TGAGCGCACC 0.825147 -365 TTCATGCACTATATGCGCATCCCACTCTTGTAC 8 255 1 ATAGCGCTCC 0.96284 -226 TTTCTCTTTTTTTAGCACATTACCATAAGTAGG 9 261 0 TTTGCACTTC 0.861388 -340 AGCCATAAGGTTATGCACATCACAATTATATAT 9 376 0 TTAGCACTCC 0.984354 -225 *** **** ** * Masking position 8 Map Score: 6.02411 Number of sites scoring better than the average of aligned sites = 430 Number in coding regions = 267 Number in noncoding regions = 163 Number of orfs with sites within 600 bp upstream = 144 Fraction of orfs with sites within 600 bp upstream = 0.0231288 Motif number 8 ACATGATCAGCCACTCTTTCATTGTCAACA 4 397 1 CCACTCTTTC 0.990136 -160 ACATAGACGGCCACTTTTGTTTCCTACAAC 6 191 1 CCACTTTTGT 0.883769 -378 CCTACAACTTCCACTCTATCGTTTGGGGCC 6 213 1 CCACTCTATC 0.927293 -356 TATGCGCATCCCACTCTTGTACATGCACAA 8 266 1 CCACTCTTGT 0.935324 -215 TAGACTAATACCACTTCTTCGTTAGAAAAA 8 365 1 CCACTTCTTC 0.924984 -116 AAGTTTCAGTCCACTCGTTCCGTGGGAAGC 9 73 0 CCACTCGTTC 0.977355 -528 TAAGACTGCCCCTCTCTTTCCGCGGAATCG 9 102 1 CCTCTCTTTC 0.940559 -499 GTTTTCGTATCCGCTCGTTCGAAAGACTTT 9 573 1 CCGCTCGTTC 0.94887 -28 AACTGGCTCCCCGCTTTTGCATCTTTTGGG 10 24 1 CCGCTTTTGC 0.954999 -577 GAATTTTGAGCCACTTTTGCGGAAGACAGG 10 116 1 CCACTTTTGC 0.980141 -485 TTGGGATCTGCTACTTTTTCGATCTTTCGG 11 160 1 CTACTTTTTC 0.806137 -441 ********** Masking position 5 Map Score: 7.4721 Number of sites scoring better than the average of aligned sites = 618 Number in coding regions = 462 Number in noncoding regions = 156 Number of orfs with sites within 600 bp upstream = 148 Fraction of orfs with sites within 600 bp upstream = 0.0237713 Motif number 9 AATGCAGTTGTCGTGGAAATAATGGCTTTACCT 1 51 0 TCGGAATAAT 0.881283 -290 TGTCTCCTCATCGCGTGAAAAATTTGAGAAAAA 3 156 1 TCGGGAAAAT 0.987406 -145 TTATATATCCTCGAGGAAAAATTACCAAACAGT 4 92 0 TCGGAAAATT 0.902057 -465 TCGTTTCTTCTCGTTTAATAACTAAACGAGACT 4 215 0 TCGTAAAACT 0.81283 -342 TATGAATGGCTCGAGAAACAAATAGGAAACGAA 5 141 0 TCGGAAAAAT 0.983172 -160 CCTCATCATCTCTTGGAAAAAATTTCACCATCA 5 267 0 TCTGAAAAAT 0.821538 -34 GCAGGAAAATTCGAGAGATAAAGTAC 6 4 0 TCGGGAAAAG 0.936568 -565 GGATTAAAATTCGTGGGAAAAATCACGCTTTTT 7 197 1 TCGGGAAAAT 0.987406 -104 TACCACTTCTTCGTTAGAAAAATATTTCAATCC 8 373 1 TCGTGAAAAT 0.931289 -108 AATAACAAAGTCGAGTGATAACTAACACAGTTG 9 480 0 TCGGGAAACT 0.971192 -121 CTAGGAACTTTCGAAAAAGAAATTAAAGACCCT 9 535 1 TCGAAAAAAT 0.851358 -66 *** * ** **** Masking position 8 Map Score: 4.73546 Number of sites scoring better than the average of aligned sites = 211 Number in coding regions = 139 Number in noncoding regions = 72 Number of orfs with sites within 600 bp upstream = 69 Fraction of orfs with sites within 600 bp upstream = 0.0110826 Motif number 10 CTACTGCTGTGCGAGACTTTGGTAGTAGGG 2 336 1 GCGAGACTTT 0.952801 -265 CGATCGTTTGGCGTTACTATGGAAAAGCAG 4 127 0 GCGTTACTAT 0.93295 -430 TCGTTCCTTGGCGCTATTTTCGTGCATCCC 4 175 0 GCGCTATTTT 0.880572 -382 TATCTAAAAAGCGTGATTTTTCCCACGAAT 7 205 0 GCGTGATTTT 0.983949 -96 TGCTTTCTTTGTGTGATTTTTCAGGGTCTT 7 264 0 GTGTGATTTT 0.872541 -37 TTGCAACTTTGCGTGACTTTTTTCTTTTGG 9 442 0 GCGTGACTTT 0.98982 -159 CATGATATACGCGTGACTTTTTTTTTATTT 10 152 0 GCGTGACTTT 0.98982 -449 AAGATATCTAGCGTTATTATATTTCTATAC 10 515 1 GCGTTATTAT 0.897671 -86 ********** Masking position 6 Map Score: 4.09454 Number of sites scoring better than the average of aligned sites = 147 Number in coding regions = 96 Number in noncoding regions = 51 Number of orfs with sites within 600 bp upstream = 53 Fraction of orfs with sites within 600 bp upstream = 0.00851269 Motif number 11 GCGACAACTGCATCAGCAGTTTTATTAATTTTT 1 300 1 CATGCAGTTT 0.971953 -41 AAGGGGATGCCATCATCATTCTTTTCTTCCGTA 2 34 0 CATTCATTTT 0.931077 -567 TCTCGCACAGCAGTAGCAGTATTCTTTTCCCTC 2 319 0 CAGGCAGTTT 0.979538 -282 GTAGATACGTCATATGCAGTATTCAAGTATACT 2 470 1 CATGCAGTTT 0.971953 -131 ATGTTCTTAACAGTAGTATACTTGAATACTGCA 2 484 0 CAGGTATATT 0.755817 -117 AAATGTTATACATTAGGATTGTTATTAGAATAG 3 23 0 CATGGATTTT 0.831689 -278 GATTTAATTTCATGCGCATTATTATTATCTACG 7 56 1 CATGCATTTT 0.971435 -245 CGCGGAAAGAGAGGGGCAGTCTTAAGTTTCAGT 9 93 0 GAGGCAGTTT 0.823756 -508 GGTGCCACAACATTTTCAGATTTACTAAGACTC 9 142 1 CATTCAGATT 0.737714 -459 TGAATGATTCCATGGTCATTGTTACAGCCGCCC 10 230 1 CATTCATTTT 0.931102 -371 CTGATGACAGCAGGTGTATTATTAATACGAACA 10 370 0 CAGGTATTTT 0.938099 -231 GAACGTTAAACAGTTTTATTCTTCAATCAATAT 11 481 1 CAGTTATTTT 0.857594 -120 AAAAGGTTTACAGATTTATTGTTATTGTTCTTA 11 567 1 CAGTTATTTT 0.857595 -34 *** ***** ** Masking position 8 Map Score: 3.3295 Number of sites scoring better than the average of aligned sites = 1333 Number in coding regions = 1054 Number in noncoding regions = 279 Number of orfs with sites within 600 bp upstream = 225 Fraction of orfs with sites within 600 bp upstream = 0.0361388 Motif number 12 TGCCTTACGGAAGAAAAGAATGATGATGGC 2 29 1 AAGAAAAGAA 0.921483 -572 GAACAAAAATAAAAAAAGAACAGAAATACA 2 88 0 AAAAAAAGAA 0.958759 -513 AAAAACTAAGAATAAGAGACTAGTTACTAT 3 280 0 AATAAGAGAC 0.640482 -21 GGTCTTGAACAAGAAAAGAAACTCCATTTA 4 305 0 AAGAAAAGAA 0.921483 -252 AGTTTTGGCTAAAAAAAGACAATTTGCACA 4 476 1 AAAAAAAGAC 0.954843 -81 AGTGAAAGGAAAAATAAGAAAAGTAAATAG 7 138 0 AAAATAAGAA 0.695874 -163 CATTGTTTAAAAAAAAAGACCCTGAAAAAT 7 249 1 AAAAAAAGAC 0.954843 -52 AATGTGCTAAAAAAAGAGAAATGTCTCCGC 9 273 1 AAAAAGAGAA 0.939081 -328 GAAAAAATAAAAAAAAAGTCACGCGTATAT 10 148 1 AAAAAAAGTC 0.692328 -453 CTGATGAGCCATAAAAAGAAAGATGCACCA 11 65 0 ATAAAAAGAA 0.813521 -536 AGAGAACCCCAAAAAGAGAACTACCTTGTA 11 384 0 AAAAAGAGAA 0.939081 -217 TCTTTATATGATAAAGAGAACCCCAAAAAG 11 398 0 ATAAAGAGAA 0.743108 -203 TTATCATATAAAGAAAAGACTAAGAACGAT 11 414 1 AAGAAAAGAC 0.914344 -187 AAACAGAGAGAAAAAAAGCAGAAGAATATA 11 511 0 AAAAAAAGCA 0.785718 -90 ********** Masking position 4 Map Score: 9.9822 Number of sites scoring better than the average of aligned sites = 2396 Number in coding regions = 919 Number in noncoding regions = 1477 Number of orfs with sites within 600 bp upstream = 1063 Fraction of orfs with sites within 600 bp upstream = 0.170736 Motif number 13 CTAAGACCTATGGTTGCTTTGGAAGGCTCC 1 270 0 TGGTTGCTTT 0.891611 -71 GCAAGAACATTGGTTGCTTTACTTATTATT 2 127 1 TGGTTGCTTT 0.891611 -474 ATTATTTTCAGGGTCGCTTCCGCGGGATGC 2 151 1 GGGTCGCTTC 0.893497 -450 AAATCAGGGCTCGTTTCTTCTCGTTTAATA 4 228 0 TCGTTTCTTC 0.635232 -329 CTGTCCTAGACGGTGCCTTCCCTTAGAGAC 6 65 0 CGGTGCCTTC 0.935292 -504 CGTTTGGGGCCCGTGCCTTCGACTTTTACT 6 232 1 CCGTGCCTTC 0.943786 -337 CCGCGAGGCGTTGCTTCTCTAATTTTA 6 552 0 GCGTTGCTTC 0.973467 -17 CCGTTGCTTCCGGTTGCTTTCTTTCTCCGC 8 72 0 CGGTTGCTTT 0.961685 -409 AGCAGGGATGCCGTTGCTTCCGGTTGCTTT 8 82 0 CCGTTGCTTC 0.981884 -399 ACCATTCGGTCGATTGCTTCCCACGGAACG 9 58 1 CGATTGCTTC 0.754509 -543 TTGCAACTTTGCGTGACTTTTTTCTTTTGG 9 442 0 GCGTGACTTT 0.798056 -159 CATGATATACGCGTGACTTTTTTTTTATTT 10 152 0 GCGTGACTTT 0.798056 -449 TTACAGCCGCCCGTGGCTTTGTTCCACGGA 10 251 1 CCGTGGCTTT 0.971241 -350 ********** Masking position 4 Map Score: 5.02887 Number of sites scoring better than the average of aligned sites = 641 Number in coding regions = 484 Number in noncoding regions = 157 Number of orfs with sites within 600 bp upstream = 136 Fraction of orfs with sites within 600 bp upstream = 0.0218439 Motif number 14 GCTCCTGAAGACACAAACACAGGAAATACA 1 245 0 ACACAAACAC 0.960927 -96 ACGAATATATAAACACACACACACACAAGC 2 554 1 AAACACACAC 0.96805 -47 ACACACACACAAGCAAACACACTTATAATT 2 570 1 AAGCAAACAC 0.960927 -31 GTTCGAGGCCAAACAAAAACCGCAGCACAA 6 265 0 AAACAAAAAC 0.91232 -304 CAGCGCAACCAAACAAACACCAGTTGTCGC 10 55 0 AAACAAACAC 0.98535 -546 GGCTCATACAAAACATACACTACAGCCGGT 11 194 1 AAACATACAC 0.953365 -407 ********** Masking position 5 Map Score: 0.854165 Number of sites scoring better than the average of aligned sites = 130 Number in coding regions = 53 Number in noncoding regions = 77 Number of orfs with sites within 600 bp upstream = 61 Fraction of orfs with sites within 600 bp upstream = 0.00979762 Motif number 15 ACCGTGCTCTGCTGCTTTCAGGTAAAGCCA 1 32 1 GCTGCTTTCA 0.929793 -309 GTAGAGAGCTCCTGCTTATATATTCCTCAG 2 388 0 CCTGCTTATA 0.93358 -213 CCGCTATGGTCCTGCTATCATGCTATTGTT 4 423 0 CCTGCTATCA 0.951786 -134 AAAGGTAAACCATGCTTACAAAGCCTACCT 5 17 0 CATGCTTACA 0.93358 -284 TTCCGCAGATCCTGCTCTCACCTATATAAA 6 373 1 CCTGCTCTCA 0.966951 -196 CAACGGCATCCCTGCTTATAAGCGATTTTC 8 96 1 CCTGCTTATA 0.93358 -385 AGATATATCGCATGCTTGCACTCAAATAGA 8 192 0 CATGCTTGCA 0.891831 -289 TAATAATACACCTGCTGTCATCAGTACCAA 10 379 1 CCTGCTGTCA 0.966951 -222 ********** Masking position 10 Map Score: 1.11267 Number of sites scoring better than the average of aligned sites = 186 Number in coding regions = 146 Number in noncoding regions = 40 Number of orfs with sites within 600 bp upstream = 33 Fraction of orfs with sites within 600 bp upstream = 0.00530035