AlignACE version 2.2 July 7, 1998 AlignACE -jPRE.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YBL041W 600 bp YBL041W PRE7 1-726 proteasome subunit #2 YER012W 600 bp YER012W pre1 1-597 22.6 kDa proteasome subunit #3 YFR050C 300 bp YFR050C PRE4 1-801 proteasome subunit necessary for peptidyl glutamyl peptide hydrolyzing activity #4 YGR135W 300 bp YGR135W PRE9 1-777 proteasome component Y13 #5 YJL001W 511 bp YJL001W PRE3 1-65, 182-764 Subunit of 20S proteasome #6 YML092C 383 bp YML092C PRE8 1-753 proteasome component Y7 #7 YMR314W 401 bp YMR314W PRE5 1-705 alpha-type of subunit of 20S proteasome #8 YOL038W 600 bp YOL038W PRE6 1-765 alpha-type of subunit of 20S proteasome #9 YOR362C 600 bp YOR362C PRE10 1-867 proteasome component YC1 (protease yscE subunit 1) #10 YPR103W 600 bp YPR103W PRE2 1-864 proteasome subunit Motif number 1 TACCGCTTGTTTTTGCCACCCTTTGAGTTT 1 514 0 TTTTGCCACC 0.998726 -87 TTTCTTTATTTTTTGCCACCGTAAAGATTT 2 459 0 TTTTGCCACC 0.998726 -142 TTGGTTTAGAATTTGCCACCTTAAATACGT 3 189 1 ATTTGCCACC 0.990062 -112 TCTATAAATTTTTTGCCACCTGCAGGGTAA 4 142 0 TTTTGCCACC 0.998726 -159 CTTTTCCCTTTTTTGCCACCGGATTCCGTT 5 394 0 TTTTGCCACC 0.998726 -118 CCGGGGACAATTTTGCCACCTTAATAAGCT 6 264 0 TTTTGCCACC 0.998726 -120 GAATTTTTAATTTTGCCACTCTATAATAGG 7 255 0 TTTTGCCACT 0.984071 -147 TCGAAGATTCTTTTGCCACCGGAAGGGAAA 8 491 1 TTTTGCCACC 0.998726 -110 AACTTGAAGGTTTTGCTACCACCTATATAT 8 532 0 TTTTGCTACC 0.984071 -69 ACTTTCTTATTTTTGCCACCGATTTAGAGG 9 473 0 TTTTGCCACC 0.998726 -128 CTATTCTTCGTTTTGCCACCCTTTTGCTGT 10 446 0 TTTTGCCACC 0.998726 -155 ********** Masking position 8 Map Score: 43.9316 Number of sites scoring better than the average of aligned sites = 73 Number in coding regions = 36 Number in noncoding regions = 37 Number of orfs with sites within 600 bp upstream = 45 Fraction of orfs with sites within 600 bp upstream = 0.00722775 Motif number 2 CGAAAGGGGAGAAAAAAAGAAATTAATGGCAC 1 15 1 GAAAAAAAAA 0.899267 -586 GATCAGAAAGAAGAAAAAGAAATGTGATTGAG 1 66 0 AAAAAAAAAA 0.953178 -535 AAAATCAGAAAAAAAAAACAATTTATTGCCTA 1 398 0 AAAAAAAAAT 0.953178 -203 AGTTGGAAAAGATAAAAACAATTATCGCTCCG 1 469 0 GAAAAAAAAT 0.899267 -132 TACGGTGGCAAAAAATAAAGAAAAGTGAATAT 2 466 1 AAAATAAGAA 0.90486 -135 CTGTCAATCGAATAAAAAAGAACAAACTTCGG 2 527 1 AAAAAAAGAA 0.872649 -74 CCCTAAAAGGAAAAATAATAAAGAATAAGAGT 3 118 0 AAAATAAAAA 0.965819 -183 GAACATCTTTAATAAAAAGGATTGACGGGTAA 3 150 0 AAAAAAAGAT 0.872649 -151 GAACCTTTCAGAAAATAAAAAACATTACGCGC 5 131 1 GAAATAAAAA 0.925322 -381 AATGTCATATAATAATAATAATAATAATAATA 6 67 1 AAAATAAAAT 0.965818 -317 TAATAATAATAATAATAATAATAATAATAATA 6 79 1 AAAATAAAAT 0.965818 -305 TAATAATAATAATAATAATAATAATAATAATA 6 94 1 AAAATAAAAT 0.965818 -290 TAATAATAATAATAATAATAATAATAATAATA 6 106 1 AAAATAAAAT 0.965818 -278 TAATAATAATAATAATAATAATAATAATAATA 6 118 1 AAAATAAAAT 0.965818 -266 TAATAATAATAATAATAATAATAATAATAATA 6 130 1 AAAATAAAAT 0.965818 -254 TAATAATAATAATAATAATAATAATAATAATA 6 142 1 AAAATAAAAT 0.965818 -242 TAATAATAATAATAATAATAATAATAATAGTA 6 154 1 AAAATAAAAT 0.965818 -230 CTGCTACCCAGAAAAAAAAAAACATAAGAAAA 7 108 1 GAAAAAAAAA 0.899267 -294 GTTTCAAAAAAAAAATAAAAAAAAAAGGGAAG 8 81 1 AAAATAAAAA 0.965819 -520 TCAATAGCATAAAAAAAAGGAAGGTACAAAAC 8 215 0 AAAAAAAGAA 0.872649 -386 AATCGGTGGCAAAAATAAGAAAGTAAGTGGTA 9 479 1 AAAATAAAAA 0.965819 -122 CTTCCACTGAAAAAAAAATAATATTAGTTGAA 10 47 1 AAAAAAAAAT 0.953178 -554 ATTTTCAAAAGAGAATAACAAATTTACTATTA 10 527 1 GAAATAAAAA 0.925322 -74 AAAAGAAGGAAAAAAAAACAAAC 10 588 1 AAAAAAAAAA 0.953178 -13 ** ***** *** Masking position 7 Map Score: 42.3774 Number of sites scoring better than the average of aligned sites = 9429 Number in coding regions = 1823 Number in noncoding regions = 7606 Number of orfs with sites within 600 bp upstream = 1908 Fraction of orfs with sites within 600 bp upstream = 0.306457 Motif number 3 CATTGAAGAGATAATTATAACTTTCCTGCC 2 226 1 ATAATTATAA 0.892366 -375 CCTAAAAGGAAAAATAATAAAGAATAAGAG 3 119 0 AAAATAATAA 0.892366 -182 TTAATGTCATATAATAATAATAATAATAAT 6 65 1 ATAATAATAA 0.984866 -319 AATAATAATAATAATAATAATAATAATAAT 6 77 1 ATAATAATAA 0.984866 -307 AATAATAATAATAATAATAATAATAATAAT 6 95 1 ATAATAATAA 0.984866 -289 AATAATAATAATAATAATAATAATAATAAT 6 107 1 ATAATAATAA 0.984866 -277 AATAATAATAATAATAATAATAATAATAAT 6 119 1 ATAATAATAA 0.984866 -265 AATAATAATAATAATAATAATAATAATAAT 6 134 1 ATAATAATAA 0.984866 -250 AATAATAATAATAATAATAATAATAATAAT 6 146 1 ATAATAATAA 0.984866 -238 AATAATAATAATAATAATAATAGTAATAAT 6 161 1 ATAATAATAA 0.984866 -223 AATAATAATAGTAATAATAACGTCTATATA 6 173 1 GTAATAATAA 0.924707 -211 ********** Masking position 4 Map Score: 21.972 Number of sites scoring better than the average of aligned sites = 794 Number in coding regions = 411 Number in noncoding regions = 383 Number of orfs with sites within 600 bp upstream = 116 Fraction of orfs with sites within 600 bp upstream = 0.0186315 Motif number 4 CTTTAAGTTGGAAAAGATAAAAACAATTATCGCTCCGTA 1 467 0 GAAAGTAAAA 0.886903 -134 GAACTGAGTTGGAAAGAGAGTAGCCAAGACTATTGAACT 1 555 1 GAAAGGAGAA 0.961317 -46 AAAAAATAAAGAAAAGTGAATATTGAACACCAATTACAA 2 475 1 GAAAGGAAAA 0.990052 -126 CCAATTACAAGAAAAGGGAGCACCTGTCAATCGAATAAA 2 504 1 GAAAGGAGAA 0.961317 -97 CGGGTAACCCTAAAAGGAAAAATAATAAAGAATAAGAGT 3 118 0 TAAAGAAAAA 0.748507 -183 AGCTAAGTTAAGAAAGGGGATAAGCAGCAGGAATCCTTC 3 237 1 AAAAGGGAAA 0.818069 -64 AAATGAGGATGCAGAGAAAACATGAGCAATTCACTGCTC 4 56 0 GAGAGAAAAA 0.932151 -245 GGAAACATTGGCAGAGCGAAGAGAACAGACTGCTTTCTA 4 207 1 GAGAGGAAAA 0.973117 -94 GTTGCGAGTGGAAAAGTGAAAATGACAAAATTCAAAAGA 5 358 0 GAAAGGAAAA 0.990052 -154 TCCGGTGGCAAAAAAGGGAAAAGCATTGAAATGCAATCT 5 401 1 AAAAGGAAAA 0.974209 -111 CTTTCGACGTGAAAAGCGATAATAGCTTATTAAGGTGGC 6 241 1 GAAAGGATAA 0.901098 -143 TGCCCTACTAAAAAAGTAAAAATGACCTATAAAGAACAT 7 214 1 AAAAGAAAAA 0.934794 -188 AAAATAAAAAAAAAAGGGAAGAAATTATATATAAATATA 8 92 1 AAAAGGAAAA 0.974209 -509 GAGCCATGTCATAGAGCAAAGAAAGAGCACACATAATAT 8 175 0 AAGAGAAAAA 0.839078 -426 CCACCGGAAGGGAAAGAAAAGACATCATATATAGGTGGT 8 506 1 GAAAGAAAAA 0.974209 -95 ATAATTCCCTGCAAAGTGAAAAAGTTCGATTGGAAACTG 10 191 1 GAAAGGAAAA 0.990052 -410 GAAAGAAACCAGAAAGAAAAGAAGGAAAAAAAAACAAAC 10 572 1 AAAAGAAAAA 0.934794 -29 * **** *** * * Masking position 12 Map Score: 17.9237 Number of sites scoring better than the average of aligned sites = 1039 Number in coding regions = 517 Number in noncoding regions = 522 Number of orfs with sites within 600 bp upstream = 442 Fraction of orfs with sites within 600 bp upstream = 0.0709926 Motif number 5 AAGGCGAAAGGGGAGAAAAAAAGA 1 5 1 CGAAAGGGGA 0.847312 -596 AAGAAGAAAAAGAAATGTGATTGAGCCATG 1 61 0 AGAAATGTGA 0.820405 -540 CAAAAAATAAAGAAAAGTGAATATTGAACA 2 474 1 AGAAAAGTGA 0.975271 -127 ACCAATTACAAGAAAAGGGAGCACCTGTCA 2 503 1 AGAAAAGGGA 0.991101 -98 GAAGGACGAAAGAAAAGGATACCTCGATTT 3 69 0 AGAAAAGGAT 0.844177 -232 AGCTAAGTTAAGAAAGGGGATAAGCAGCAG 3 237 1 AGAAAGGGGA 0.972363 -64 CGTTGCGAGTGGAAAAGTGAAAATGACAAA 5 368 0 GGAAAAGTGA 0.861504 -144 ATCCGGTGGCAAAAAAGGGAAAAGCATTGA 5 400 1 AAAAAAGGGA 0.975271 -112 AAACATAAGAAAAAAAGGGTTAGGGTTGAA 7 127 1 AAAAAAGGGT 0.880964 -275 ATGCCCTACTAAAAAAGTAAAAATGACCTA 7 213 1 AAAAAAGTAA 0.783582 -189 AAAAATAAAAAAAAAAGGGAAGAAATTATA 8 91 1 AAAAAAGGGA 0.975271 -510 AATAGCATAAAAAAAAGGAAGGTACAAAAC 8 215 0 AAAAAAGGAA 0.910905 -386 AAACAATTGAAGAAAAGGAAAGGTAATATT 9 20 0 AGAAAAGGAA 0.966522 -581 GCAATGATTCAGAAAAGTGACCCCATCAGG 9 324 0 AGAAAAGTGA 0.975271 -277 ********** Masking position 5 Map Score: 14.6023 Number of sites scoring better than the average of aligned sites = 1743 Number in coding regions = 1063 Number in noncoding regions = 680 Number of orfs with sites within 600 bp upstream = 589 Fraction of orfs with sites within 600 bp upstream = 0.0946033 Motif number 6 AATTGTTTTTTTTTTCTGATTTTGTATTGCCG 1 407 1 TTTTTTATTT 0.696325 -194 GCGATAATTGTTTTTATCTTTTCCAACTTAAA 1 473 1 TTTTTTTTTT 0.77898 -128 CACCACCTTCTTTTAGTCTTTTAGCGAAAAAG 2 78 1 TTTTATTTTT 0.926895 -523 CAATATTCACTTTTCTTTATTTTTTGCCACCG 2 468 0 TTTTCTATTT 0.658387 -133 CGTGCCCGAAGTTTGTTCTTTTTTATTCGATT 2 532 0 GTTTGTTTTT 0.835747 -69 ATACCTCGATTTTTATTTATTTAGTTTGTGTA 3 49 0 TTTTATATTT 0.891878 -252 GTGTGGGTTTTTATGTTGTTTTCGGCGGAAGA 3 277 0 TTATGTTTTT 0.766869 -24 TCAGTCTCTATTTTAATAATTGATTATTGGAT 4 260 1 TTTTATATTG 0.74492 -41 AGCACCAATATTTTGTAGTTTGCGTCTTGTTC 5 17 1 TTTTGATTTG 0.757021 -495 CACCGATCATTTTTGATGATTTGGCGTTTTTG 5 311 1 TTTTGTATTT 0.95179 -201 GATTTGGCGTTTTTGTTATATTGATAGATTTC 5 328 1 TTTTGTTATT 0.640524 -184 GATAGATTTCTTTTGAATTTTGTCATTTTCAC 5 350 1 TTTTGATTTG 0.757021 -162 CAATTTGATATTTTATTTATTTCACTGTTATA 6 17 1 TTTTATATTT 0.891878 -367 AGGTGAAGCATTTTATATTTTTAGTTTCAATT 6 317 1 TTTTAATTTT 0.786186 -67 CCTTTTTTTCTTATGTTTTTTTTTTTCTGGGT 7 113 0 TTATGTTTTT 0.766869 -289 AATACTAGGTTTTTAGTAATTTCGGAGATACT 7 174 0 TTTTATATTT 0.891878 -228 TATAGGTCATTTTTACTTTTTTAGTAGGGCAT 7 213 0 TTTTATTTTT 0.926895 -189 TTGACGATACTTTTGAATTTTTAATTTTGCCA 7 267 0 TTTTGATTTT 0.897963 -135 TCCCTTTTTTTTTTATTTTTTTTTTGAAACAA 8 79 0 TTTTATTTTT 0.926895 -522 AGAGTTATGCTTTTGTTAATTTGATGATGCGA 9 573 0 TTTTGTATTT 0.95179 -28 TTTGCCACCCTTTTGCTGTTTTCCCTCATATC 10 433 0 TTTTGTTTTT 0.968097 -168 TGTTATTCTCTTTTGAAAATTGATATATTGAA 10 515 0 TTTTGAATTG 0.669638 -86 GTTTGTTTTTTTTTCCTTCTTT 10 589 0 GTTTGTTTTT 0.835747 -12 ***** * **** Masking position 4 Map Score: 15.5157 Number of sites scoring better than the average of aligned sites = 2955 Number in coding regions = 1453 Number in noncoding regions = 1502 Number of orfs with sites within 600 bp upstream = 999 Fraction of orfs with sites within 600 bp upstream = 0.160456 Motif number 7 TGTCAAAAGGAATTCACCGCATGGTTTTCA 2 328 0 AATTCACCGC 0.969738 -273 CACCGTAAAGATTTCGCTGCGAAAGATGCC 2 443 0 ATTTCGCTGC 0.976711 -158 AAACATGAGCAATTCACTGCTCACTCACTG 4 48 0 AATTCACTGC 0.974906 -253 GGTAACGAATATTTAACTGCCTCAAGATGT 4 117 0 ATTTAACTGC 0.878942 -184 TAAAGATTGCATTTCAATGCTTTTCCCTTT 5 413 0 ATTTCAATGC 0.878942 -99 TATTTTATTTATTTCACTGTTATAACATAA 6 25 1 ATTTCACTGT 0.93583 -359 TTTAACGAAGATTTCGCCGCCCCTCTAAAT 9 452 1 ATTTCGCCGC 0.971904 -149 GTGAAACAATAATTCCCTGCAAAGTGAAAA 10 183 1 AATTCCCTGC 0.922804 -418 ATTTCTATGGATTTCACCGTTCTTTTTTCA 10 290 1 ATTTCACCGT 0.923249 -311 ********** Masking position 4 Map Score: 4.99757 Number of sites scoring better than the average of aligned sites = 362 Number in coding regions = 262 Number in noncoding regions = 100 Number of orfs with sites within 600 bp upstream = 92 Fraction of orfs with sites within 600 bp upstream = 0.0147767 Motif number 8 CGAACACCAAATCTCTGCGACGCAGAGACG 1 437 0 ATCTCTGCGA 0.979623 -164 AGTTATAATTATCTCTTCAATGAACCTAAA 2 218 0 ATCTCTTCAA 0.968674 -383 TCCAACATCGAGCTCTGCGAGTGTTATATA 4 16 0 AGCTCTGCGA 0.97922 -285 AAGAGTGCCAAGCTCTTCAACACCGATCAT 5 291 1 AGCTCTTCAA 0.968061 -221 GTATTTCTTAATCTTTTCGAAGATTCTTTT 8 475 1 ATCTTTTCGA 0.883555 -126 TGCTCAGATTATCTCTTCAAAGGGTAAATT 9 281 0 ATCTCTTCAA 0.968674 -320 CTTACCACTCAGCTATGCGAAAGTTTCATT 10 137 0 AGCTATGCGA 0.927822 -464 GTTTCTTTCTATCTATTCAATTTAATAGTA 10 551 0 ATCTATTCAA 0.894017 -50 ********** Masking position 1 Map Score: 4.5497 Number of sites scoring better than the average of aligned sites = 296 Number in coding regions = 230 Number in noncoding regions = 66 Number of orfs with sites within 600 bp upstream = 58 Fraction of orfs with sites within 600 bp upstream = 0.00931577 Motif number 9 CAAGCTTTTAAATCAAGACTCAACCAAGCCCCCACACT 1 210 0 AAATAACAAG 0.986594 -391 CAAGCGGTATAATACAAGGTGAACTGAGTTGGAAAGAG 1 535 1 AAATAACGAG 0.976567 -66 TATTTAAGGTGGCAAATTCTAAACCAAGAAGCTGGAAC 3 178 0 GGATAACAAG 0.917143 -123 GAAGTGGGTAAGAATACATTGAACTAAGCCTTCATATA 7 364 1 AGATAACAAG 0.976567 -38 CGCGTAAAAAAACATATACTTAACGGAGGCCGAAGGAG 9 55 0 AAATAACGAG 0.976567 -546 TCCGATAGCTAAATCACGTTTAACGAAGATTTCGCCGC 9 434 1 AAATAACAAG 0.986594 -167 TTTTCAGTGGAAGGGAAGGTGAACCAAGAACATACAAA 10 22 0 AAATAACAAG 0.986594 -579 GTTGAAATACAATAAAATATGAACTAAGAAAGAAGCCT 10 73 1 AAATAACAAG 0.986594 -528 ** * * *** *** Masking position 12 Map Score: 3.22974 Number of sites scoring better than the average of aligned sites = 108 Number in coding regions = 64 Number in noncoding regions = 44 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 10 TGGGACACAAACGGCGCTGCCTCTCCTGCGGGCG 1 97 0 ACCCTCCTCT 0.9717 -504 CAATTCCTTTGCAGCAATACCTTTACTTTATTTC 1 278 0 GCCATCCTTT 0.962918 -323 TTTAAATATTACGGCAATTCCTTTGCAGCAATAC 1 292 0 ACCATCCTTT 0.973312 -309 CATTGCTATCGCCTCACTGCCTTTACATCACTTA 1 336 0 GCCCTCCTTT 0.989252 -265 CAGCAACATAACACCACCTTCTTTTAGTCTTTTA 2 67 1 ACCCCTCTTT 0.940063 -534 ATTTATTTTAACTACGCCGCCTGTCTGAGTCCTT 2 156 0 ACCCCCCTGT 0.964502 -445 AAGAACCAAGACGCCACTACATTTAGGTAGACGT 7 308 1 ACCCTCATTT 0.918662 -94 TAAAATACTCACGTCGCTTTCTTTGAATATTTGG 8 345 1 ACCCTTCTTT 0.973316 -256 CGCGCTGTTTGCGTCGCTCTCTGTATTTCTATGG 10 266 1 GCCCTTCTGT 0.926979 -335 CATCGTCAGTACACCCATACCTTTAGGATGGTTG 10 356 1 ACCATCCTTT 0.973313 -245 ** * ** ***** Masking position 12 Map Score: 4.02257 Number of sites scoring better than the average of aligned sites = 356 Number in coding regions = 248 Number in noncoding regions = 108 Number of orfs with sites within 600 bp upstream = 96 Fraction of orfs with sites within 600 bp upstream = 0.0154192 Motif number 11 TATTATTATTATTATTATTATATGACATTA 6 66 0 ATTATTATTA 0.98179 -318 TATTATTATTATTATTATTATTATTATTAT 6 78 0 ATTATTATTA 0.98179 -306 TATTATTATTATTATTATTATTATTATTAT 6 90 0 ATTATTATTA 0.98179 -294 TATTATTATTATTATTATTATTATTATTAT 6 105 0 ATTATTATTA 0.98179 -279 TATTATTATTATTATTATTATTATTATTAT 6 117 0 ATTATTATTA 0.98179 -267 TATTATTATTATTATTATTATTATTATTAT 6 138 0 ATTATTATTA 0.98179 -246 TATTATTATTATTATTATTATTATTATTAT 6 150 0 ATTATTATTA 0.98179 -234 TATTATTACTATTATTATTATTATTATTAT 6 162 0 ATTATTATTA 0.98179 -222 ********** Masking position 4 Map Score: 18.0891 Number of sites scoring better than the average of aligned sites = 713 Number in coding regions = 371 Number in noncoding regions = 342 Number of orfs with sites within 600 bp upstream = 92 Fraction of orfs with sites within 600 bp upstream = 0.0147767 Motif number 12 TTTACTATGTGGGTACGTATTTAAGGTGGC 3 203 0 GGGTACGTAT 0.975777 -98 TTCGCGAGCAGGGTAAGTATGCGCGTAATG 5 153 0 GGGTAAGTAT 0.988941 -359 TTCAGACCTAGGATAAGTATCTCCGAAATT 7 159 1 GGATAAGTAT 0.944859 -243 CAAGAGAAGTGGGTAAGAATACATTGAACT 7 359 1 GGGTAAGAAT 0.984229 -43 CCATTACTATGGGTAAGAATATCATCCGGG 8 440 1 GGGTAAGAAT 0.984229 -161 ********** Masking position 5 Map Score: 2.57407 Number of sites scoring better than the average of aligned sites = 72 Number in coding regions = 36 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 13 GCGGGCGATCAGAAAGAAGAAAAAGAAATG 1 74 0 AGAAAGAAGA 0.959268 -527 ATACAAAATCAGAAAAAAAAAACAATTTAT 1 404 0 AGAAAAAAAA 0.859074 -197 GTGGCAAAAAATAAAGAAAAGTGAATATTG 2 470 1 ATAAAGAAAA 0.870031 -131 CAATCGAATAAAAAAGAACAAACTTCGGGC 2 531 1 AAAAAGAACA 0.780232 -70 TATAGAAGGACGAAAGAAAAGGATACCTCG 3 73 0 CGAAAGAAAA 0.892137 -228 GCTGCTACCCAGAAAAAAAAAAACATAAGA 7 107 1 AGAAAAAAAA 0.859074 -295 AAAATGACCTATAAAGAACATACCCTATTA 7 232 1 ATAAAGAACA 0.862266 -170 CATAGAGCAAAGAAAGAGCACACATAATAT 8 175 0 AGAAAGAGCA 0.876645 -426 CCACCGGAAGGGAAAGAAAAGACATCATAT 8 506 1 GGAAAGAAAA 0.892137 -95 TATACACACTAGAAAGAACAGTATTTCCCA 9 214 1 AGAAAGAACA 0.978288 -387 ATATGAACTAAGAAAGAAGCCTGCGGTTAC 10 89 1 AGAAAGAAGC 0.881521 -512 TTGAATAGATAGAAAGAAACCAGAAAGAAA 10 561 1 AGAAAGAAAC 0.938353 -40 GAAAGAAACCAGAAAGAAAAGAAGGAAAAA 10 572 1 AGAAAGAAAA 0.979666 -29 ********** Masking position 5 Map Score: 7.89102 Number of sites scoring better than the average of aligned sites = 1633 Number in coding regions = 926 Number in noncoding regions = 707 Number of orfs with sites within 600 bp upstream = 556 Fraction of orfs with sites within 600 bp upstream = 0.0893029 Motif number 14 ********** No masking Map Score: 1.17832e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 AAAGAAATTAATGGCACATACCGCTTTGTGGCATGG 1 30 1 ATGCACCGCT 0.87374 -571 GGCGATAGCAATGTTTCGTAGAGCCTGTGACTAGTG 1 357 1 ATGCAGAGCT 0.937858 -244 AGGTGGTGTTATGTTGCTGTGCGCTTCTCGGATAGT 2 50 0 ATGCTGCGCT 0.971049 -551 GGTAAAAACGATGGAGTGCAGAGCCTTCCTACTTTT 2 105 0 ATGTAGAGCT 0.947414 -496 AGCTTTGCTGATGCAGTAATACGCATTGATATTTGA 2 385 0 ATGTTACGCT 0.968343 -216 GCTTAGTTCAATGTATTCTTACCCACTTCTCTTGAA 7 357 0 ATGTTACCCC 0.764571 -45 ACCCATAGTAATGGTCCTTAAAGCTTTAATCGTCAA 8 418 0 ATGCAAAGCT 0.936686 -183 ACTGATCCTGATGAACTGCTGAGCACTAACTTGAAG 8 553 0 ATGTTGAGCC 0.898255 -48 CGTTAAGTATATGTTTTTTTACGCGTTGTCAATGAC 9 68 1 ATGTTACGCT 0.977242 -533 TTCTCTGTATATGTAGTCCTACCCGTAATTTACCCT 9 255 1 ATGTTACCCT 0.903575 -346 TATTCCACTTATGAGTTGGTAAGCTTCCTCACAATT 9 388 1 ATGTTAAGCT 0.964059 -213 CGACGCTCGAATGTGTTTGAAAGCTTTACAACTGCA 9 540 0 ATGTAAAGCT 0.93816 -61 *** * ***** * Masking position 1 Map Score: 1.7796 Number of sites scoring better than the average of aligned sites = 353 Number in coding regions = 271 Number in noncoding regions = 82 Number of orfs with sites within 600 bp upstream = 52 Fraction of orfs with sites within 600 bp upstream = 0.00835207