AlignACE version 2.2 July 7, 1998 AlignACE -jRPL.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YBL092W 600 bp YBL092W RPL32 1-393 Ribosomal protein L32 #2 YBL087C 463 bp YBL087C RPL23A 1-42, 547-918 Ribosomal protein L23A (L17aA) (YL32) #3 YBL027W 584 bp YBL027W RPL19B 1-2, 387-954 Ribosomal protein L19B (YL14) (L23B) (rpl5L) #4 YBR031W 300 bp YBR031W RPL4A 1-1089 Ribosomal protein L4A (L2A) (rp2) (YL2) #5 YBR084C-A 600 bp YBR084C-A RPL19A 1-2, 509-1076 Ribosomal protein L19A (L23A) (rpl5L) (YL14) #6 YBR191W 600 bp YBR191W RPL21A 1-11, 400-871 Ribosomal protein L21A #7 YDL191W 600 bp YDL191W RPL35A 1-3, 495-854 Ribosomal protein L35A #8 YDL184C 386 bp YDL184C RPL41A 1-78 Ribosomal protein L41A (YL41) (L47A) #9 YDL136W 525 bp YDL136W RPL35B 1-3, 409-768 Ribosomal protein L35B #10 YDL133C-A 600 bp YDL133C-A RPL41B 1-78 Ribosomal protein L41B (YL41) (L47B) #11 YDL082W 600 bp YDL082W RPL13A 1-4, 370-965 Ribosomal protein L13A #12 YDL075W 600 bp YDL075W RPL31A 1-57, 479-763 Ribosomal protein L31A (L34A) (YL28) #13 YDR012W 600 bp YDR012W RPL4B 1-1089 Ribosomal protein L4B (L2B) (rp2) (YL2) #14 YDR418W 600 bp YDR418W RPL12B 1-498 Ribosomal protein L12B (L15B) (YL23) #15 YDR471W 555 bp YDR471W RPL27B 1-31, 416-795 Ribosomal protein L27B #16 YDR500C 499 bp YDR500C RPL37B 1-7, 397-656 60S ribosomal protein L37B (L43) (YL35) #17 YEL054C 600 bp YEL054C RPL12A 1-498 Ribosomal protein L12A (L15A) (YL23) #18 YER056C-A 551 bp YER056C-A RPL34A 1-39, 437-763 Ribosomal protein L34A #19 YER117W 596 bp YER117W RPL23B 1-42, 514-885 Ribosomal protein L23B (L17aB) (YL32) #20 YFL034C-A 543 bp YFL034C-A RPL22B 1-12, 334-690 Ribosomal protein L22B (L1c) (rp4) (YL31) #21 YFR031C-A 600 bp YFR031C-A RPL2A 1-4, 152-912 Ribosomal protein L2A (L5A) (rp8) (YL6) #22 YFR032C-A 600 bp YFR032C-A RPL29 1-180 Ribosomal protein L29 (YL43) #23 YGL147C 421 bp YGL147C RPL9A 1-576 Ribosomal protein L9A (L8A) (rp24) (YL11) #24 YGL135W 600 bp YGL135W RPL1B 1-654 Ribosomal protein L1B #25 YGL103W 600 bp YGL103W RPL28 1-49, 561-961 Ribosomal protein L28 (L29) (rp44) (YL24) #26 YGL076C 600 bp YGL076C RPL7A 1-11, 471-564, 1033-1662 Ribosomal protein L7A (L6A) (rp11) (YL8) #27 YGL031C_YGL030W 1156 bp YGL031C RPL24A 1-468 Ribosomal protein L24A (rp29) (YL21) (L30A) YGL030W RPL30 1-3, 234-548 Large ribosomal subunit protein L30 (L32) (rp73) (YL38) #28 YGR034W 600 bp YGR034W RPL26B 1-25, 380-744 Ribosomal protein L26B (L33B) (YL33) #29 YGR085C 600 bp YGR085C RPL11B 1-525 60S ribosomal protein L11B (L16B) (rp39B) (YL22) #30 YGR148C 600 bp YGR148C RPL24B 1-468 Ribosomal protein L24B (rp29) (YL21) (L30B) #31 YHL033C 353 bp YHL033C RPL8A 1-771 Ribosomal protein L8A (rp6) (YL5) (L4A) #32 YHL001W 306 bp YHL001W RPL14B 1-129, 528-815 Ribosomal protein L14B #33 YHR010W 600 bp YHR010W RPL27A 1-31, 593-972 Ribosomal protein L27A #34 YHR141C 600 bp YHR141C RPL42B 1-4, 446-762 Ribosomal protein L42B (YL27) (L41B) (YP44) #35 YIL148W 600 bp YIL148W RPL40A 1-8, 443-821 Ribosomal protein L40A #36 YIL133C 443 bp YIL133C rpl16A 1-31, 322-890 Ribosomal protein L16A (L21A) (rp22) (YL15) #37 YIL052C 600 bp YIL052C RPL34B 1-37, 510-838 Ribosomal protein L34B #38 YIL018W 600 bp YIL018W RPL2B 1-4, 405-1165 Ribosomal protein L2B (L5B) (rp8) (YL6) #39 YJL189W 600 bp YJL189W RPL39 1-6, 393-542 Ribosomal protein L39 (L46) (YL40) #40 YJL177W 600 bp YJL177W RPL17b 1-309, 627-872 Ribosomal protein L17B (L20B) (YL17) #41 YJR094W-A 600 bp YJR094W-A RPL43B 1-2, 278-554 Ribosomal protein L43B #42 YKL180W 600 bp YKL180W RPL17A 1-309, 616-861 Ribosomal protein L17A (L20A) (YL17) #43 YKL006W 600 bp YKL006W RPL14A 1-129, 528-815 Ribosomal protein L14A #44 YKR094C 600 bp YKR094C RPL40B 1-8, 377-755 Ribosomal protein L40B #45 YLL045C 600 bp YLL045C RPL8B 1-771 Ribosomal protein L8B (L4B) (rp6) (YL5) #46 YLR029C 600 bp YLR029C RPL15A 1-615 Ribosomal protein L15A (YL10) (rp15R) (L13A) #47 YLR061W 427 bp YLR061W RPL22A 1-12, 402-755 Ribosomal protein L22A (L1c) (rp4) (YL31) #48 YLR075W 470 bp YLR075W RPL10 1-666 Ribosomal protein L10\; Ubiquinol-cytochrome C reductase complex subunit VI requiring protein #49 YLR185W 300 bp YLR185W RPL37A 1-7, 367-626 60S ribosomal protein L37A (L43) (YL35) #50 YLR325C 600 bp YLR325C RPL38 1-237 Ribosomal protein L38 #51 YLR344W 600 bp YLR344W RPL26A 1-19, 467-831 Ribosomal protein L26A (L33A) (YL33) #52 YLR406C 600 bp YLR406C RPL31B 1-57, 407-691 Ribosomal protein L31B (L34B) (YL28) #53 YLR448W 600 bp YLR448W RPL6B 1-15, 400-915 60S ribosomal subunit protein L6B (L17B) (rp18) (YL16) #54 YML073C 557 bp YML073C RPL6A 1-15, 431-946 Ribosomal protein L6A (L17A) (rp18) (YL16) #55 YMR121C 352 bp YMR121C RPL15B 1-615 Ribosomal protein L15B (YL10) (L13B) (rp15R) #56 YMR142C 600 bp YMR142C RPL13B 1-4, 407-1002 Ribosomal protein L13B #57 YMR194W 332 bp YMR194W RPL36A 1-16, 480-766 Ribosomal protein L36A (L39) (YL39) #58 YMR242C 600 bp YMR242C RPL20A 1-543 Ribosomal protein L20A (L18A) #59 YNL301C 600 bp YNL301C RPL18B 1-112, 545-993 Ribosomal protein L18B (rp28B) #60 YNL162W 600 bp YNL162W RPL42A 1-4, 487-833 Ribosomal protein L42A (YL27) (L41A) #61 YNL069C 600 bp YNL069C RPL16B 1-28, 478-1046 Ribosomal protein L16B (L21B) (rp23) (YL15) #62 YNL067W 600 bp YNL067W RPL9B 1-576 Ribosomal protein L9B (L8B) (rp24) (YL11) #63 YOL127W 600 bp YOL127W RPL25 1-13, 428-843 Ribosomal protein L25 (rpl6L) (YL25) #64 YOL120C 453 bp YOL120C RPL18A 1-112, 560-1008 Ribosomal protein L18A (rp28A) #65 YOR063W 600 bp YOR063W RPL3 1-1164 Ribosomal protein L3 (rp1) (YL1) #66 YOR234C 464 bp YOR234C RPL33B 1-19, 547-851 Ribosomal protein L33B (L37B) (rp47) (YL37) #67 YOR312C 600 bp YOR312C RPL20B 1-7, 415-932 60S ribosomal protein L20B (L18B) #68 YPL249C-A 429 bp YPL249C-A RPL36B 1-16, 255-541 Ribosomal protein L36B (L39) (YL39) #69 YPL220W 365 bp YPL220W RPL1A 1-654 Ribosomal protein L1A, forms part of the 60S ribosomal subunit #70 YPL198W 396 bp YPL198W RPL7B 1-11, 421-514, 922-1551 Ribosomal protein L7B (L6B) (rp11) (YL8) #71 YPL143W 600 bp YPL143W RPL33A 1-19, 545-849 Ribosomal protein L33A (L37A) (YL37) (rp47) #72 YPL131W 502 bp YPL131W RPL5 1-894 Ribosomal protein L5 (L1a)(YL3) #73 YPL079W 300 bp YPL079W RPL21B 1-11, 433-904 Ribosomal protein L21B #74 YPR043W 503 bp YPR043W RPL43A 1-2, 406-682 Ribosomal protein L43A #75 YPR102C 600 bp YPR102C RPL11A 1-525 Ribosomal protein L11A (L16A) (rp39A) (YL22) Motif number 1 GCAGTTGGGGGTGTACAGATGTTAATGTAGT 2 118 0 GTGTAAGATG 0.601764 -346 CAGCCCGAGCGTGTTTGGGTTTGATATTTTC 2 275 0 GTGTTGGGTT 0.50695 -189 GGATGACAAAATGCATGGGTGTAAAAAAGGA 5 168 0 ATGCAGGGTG 0.949491 -433 GATGGTGAAGATGTACAGGTGTAAAACTGTC 6 248 0 ATGTAAGGTG 0.886651 -353 TTTTTACTGGAGGCAAGGATGAGTTTGAATA 6 289 1 AGGCAGGATG 0.646849 -312 GGGTGTAGATATGTATGGGTCTGAGATTAAT 7 308 0 ATGTAGGGTC 0.85874 -293 AAGCTATAAAATGTGCGGATGTTTGTATATG 8 111 0 ATGTGGGATG 0.849661 -276 ATAGAATAAAATGTACGGGTTCAAAGCAGGG 9 241 0 ATGTAGGGTT 0.941234 -285 AAAAATTCAAATGTTTGGGTGCTGAATCCAT 9 346 0 ATGTTGGGTG 0.920489 -180 TGAGATAAGGGTGTACGGGTGTGGTAACCGT 10 256 0 GTGTAGGGTG 0.968131 -345 GCCATGTAAAATGTATAGGTTACGCAGTAGA 11 43 0 ATGTAAGGTT 0.628624 -558 ATTTTTCAACATGTATGGGTGTTTTTTCTGA 11 319 1 ATGTAGGGTG 0.986669 -282 GTAACAGGAAATGTATGGGTCACATATTAAT 11 382 0 ATGTAGGGTC 0.85874 -219 GCCTGCATATATGTAAGGATGTAACAGGAAA 11 402 0 ATGTAGGATG 0.972096 -199 AACATCCACAGTGCACGGATGTTTGAAGGAA 14 95 0 GTGCAGGATG 0.784082 -506 TGCACTGTGGATGTTTGGGTTGTGTATTTTG 14 111 1 ATGTTGGGTT 0.714705 -490 AGGGTAATATATGTGTGGGTGGAAAATGATT 15 220 0 ATGTGGGGTG 0.923123 -336 AAATACAAATATGTACAGGTGTTAATGTCTA 16 259 0 ATGTAAGGTG 0.886651 -241 CACATATTTGGTGTTCGGATGTTAAACAGGG 17 73 0 GTGTTGGATG 0.691011 -528 AACACCAAATATGTGTGGGTGTCAAACAAAG 17 89 1 ATGTGGGGTG 0.923123 -512 AAACATTAGGATGTAAAGGTGTTCTCAAATA 18 200 1 ATGTAAGGTG 0.886651 -352 ATTTAGTGGTATGTATGGGTGATAAATTTTT 18 239 1 ATGTAGGGTG 0.986669 -313 GTTCACAAAAGTGTACGGATGTATACAACAG 19 208 0 GTGTAGGATG 0.934632 -389 TAAACAAAAAATGTTTGGGTTCACAAAAGTG 19 226 0 ATGTTGGGTT 0.714705 -371 ATCTCTGAATATGTACGGGTGTTGACATGGA 20 299 0 ATGTAGGGTG 0.986669 -245 GGTGTTAAAAATGTACGGGTGAAAAAAGTCT 21 88 0 ATGTAGGGTG 0.986669 -513 TTTTCCAGAAATGTTTGGGTTTATTTTTTAA 23 111 1 ATGTTGGGTT 0.714705 -311 ATATTGAAAGATGTATGGGTTCAAAAATGTC 24 289 0 ATGTAGGGTT 0.941234 -312 ATCTTTCAATATGCACGGGTGCAACCTCAAA 24 308 1 ATGCAGGGTG 0.949491 -293 TGGGTCCCTGGTGTACAGATGTTACATTGGT 25 321 0 GTGTAAGATG 0.601764 -280 GATTTTGGTAATGTGTGGGTCCCTGGTGTAC 25 336 0 ATGTGGGGTC 0.496536 -265 ATTTATAGATATGTGTGGGTGTTTATATGAT 26 349 0 ATGTGGGGTG 0.923123 -252 TATATAGGAAAGGTACGGATTTATAGATATG 26 367 0 AGGTAGGATT 0.609466 -234 ACGTTCCAAAATGTATGGATGGTAAGGTCTT 27 825 1 ATGTAGGATG 0.972096 -332 AACACCTTTAATGCACGGGTGTAAAAGGGAT 28 183 0 ATGCAGGGTG 0.949491 -418 TGCATTAAAGGTGTTTGGGTTTAATAGGAGC 28 199 1 GTGTTGGGTT 0.50695 -402 AAAAAAAGTAATGTATGGGTTCTCGTTGTAC 29 363 0 ATGTAGGGTT 0.941234 -238 TGGCCTAGATATGTTTGGGTGTTTTCTTCAT 31 114 0 ATGTTGGGTG 0.920489 -240 AATTAAAGATATGTAAAGGTGCTATATAAGT 32 18 0 ATGTAAGGTG 0.886651 -289 AAAGATGTAGGTGTACGGATGCATTAACGTC 33 184 0 GTGTAGGATG 0.934632 -417 ACAGCAAAAAATGTAAAGATGTAGGTGTACG 33 198 0 ATGTAAGATG 0.786401 -403 GGTGTATCGGATGTTCGGATGTCACTGTCTT 34 223 0 ATGTTGGATG 0.844932 -378 TATTTTCATGATGTATGGGTGTATCGGATGT 34 240 0 ATGTAGGGTG 0.986669 -361 CATCTTAGTAATGTACGGATGTAATAAACTC 35 244 0 ATGTAGGATG 0.972096 -357 CAACTTTGCGGTGTACAGATGTCGTCACATA 37 119 1 GTGTAAGATG 0.601764 -482 TTGTAAAATAATGTATGGGTTCTAGTCTGAA 38 186 0 ATGTAGGGTT 0.941234 -415 TCAAATAGTGAGGTGTGGATGTATAGAGGAA 39 187 1 AGGTGGGATG 0.539171 -414 AAACAAGGCCATGTATGGGTGAGAATGTCCA 40 77 0 ATGTAGGGTG 0.986669 -524 AACACCTTTTATGCAGAGGTGTAGTAGTGTA 40 437 1 ATGCAAGGTG 0.66518 -164 AATAAAAGAAGGGTGGGGGTGTATTTGCTGC 41 17 0 GGGTGGGGTG 0.505019 -584 GTTAAAAAGGATGTATGGATGGAGGGTTGGC 41 293 0 ATGTAGGATG 0.972096 -308 TCTAAATGATATGTATGGGTTAAAAAGGATG 41 311 0 ATGTAGGGTT 0.941234 -290 ATGTTGTAATGTGTTTGGATGATAATAGTCT 42 236 0 GTGTTGGATG 0.691011 -365 AGCCAACTAAATGTACGGATGTTGTAATGTG 42 254 0 ATGTAGGATG 0.972096 -347 TGTAAAAATAGTGTATGGGTGTATTTGCGCT 43 190 0 GTGTAGGGTG 0.968131 -411 AATCTATTAGAGGCACGGATGGAAATAGTAT 44 329 0 AGGCAGGATG 0.646849 -272 GGTGTCTAAGATGTACGGATCTTCATTGGGA 45 316 0 ATGTAGGATC 0.741016 -285 TTTTTGATAAATGTACGGATTTAAAGCTGTC 46 367 1 ATGTAGGATT 0.882882 -234 ATTAACATAAATGTATGGATGTATTATTAAA 47 200 0 ATGTAGGATG 0.972096 -228 GAGGGAAAAGATGTACAGGTGTAAAAAAGCA 48 202 0 ATGTAAGGTG 0.886651 -269 GTTTATGAAAATGCACGGATGCATTTTCTCT 50 313 0 ATGCAGGATG 0.898453 -288 AATAATCAATATGTACGGATGTTGGAAAGGT 51 289 0 ATGTAGGATG 0.972096 -312 TTTTCATGTAATGTATGGGTTAACTAATCCT 51 330 1 ATGTAGGGTT 0.941234 -271 CTATGTAATAATGCACGGATGTAGAGAAACA 52 45 0 ATGCAGGATG 0.898453 -556 GGATGTACGGATGTACGGATGTATACTATGT 52 70 0 ATGTAGGATG 0.972096 -531 TTGTGTACAGATGTACGGATGTACGGATGTA 52 86 0 ATGTAGGATG 0.972096 -515 ATACATTTTGGTGCATGGGTGATATTTTGTC 53 147 0 GTGCAGGGTG 0.885261 -454 ATGCACCAAAATGTATGGGTCATAATTTTTT 53 162 1 ATGTAGGGTC 0.85874 -439 CATTTTAATAATGTACGGATTTAATAGCAGT 54 206 0 ATGTAGGATT 0.882882 -352 CATTATTAAAATGTATGGATTTGTTATATTT 54 224 1 ATGTAGGATT 0.882882 -334 TGATTTTATAATGTATGGGTGCCAATATGTA 56 178 1 ATGTAGGGTG 0.986669 -423 TGGGTGCGTAATGTACAGATTTTATGGCACT 56 254 0 ATGTAAGATT 0.44342 -347 AAAACTATAAATGTATGGGTGCGTAATGTAC 56 269 0 ATGTAGGGTG 0.986669 -332 AAACTGTGAAATGTACGGGTGTAAAACAGTC 57 170 0 ATGTAGGGTG 0.986669 -163 TGCAAAAGAAGTGTATAGGTTCTTTTTGGTT 58 422 1 GTGTAAGGTT 0.409937 -179 TTTACTTTAGATGTAAGGATGTAAGATCTCT 60 230 0 ATGTAGGATG 0.972096 -371 GGTGTGTATAGTGTACGGATTGAATATGTCA 61 196 0 GTGTAGGATT 0.75574 -405 TTTTTAAAGGAGGTTTGGGTGTGTATAGTGT 61 213 0 AGGTTGGGTG 0.705591 -388 CTTATTTAATATGTACGGGTGTTTACATGGA 63 202 1 ATGTAGGGTG 0.986669 -399 GAAGACAATAATGCATGGGTGTTAATTCTAT 64 210 1 ATGCAGGGTG 0.949491 -244 GAAACGTAAAATGTACGGGTGAACAGTCCCG 67 231 0 ATGTAGGGTG 0.986669 -370 ACATCCGTGGATGTACGGGTGAAAATACAGT 68 115 0 ATGTAGGGTG 0.986669 -315 ACTTTACGGGGTGCACGGATTTTAGCAGTCT 69 203 1 GTGCAGGATT 0.440029 -163 AATTTCAGAAATGTACGGATTTAGTTGCCAG 70 178 0 ATGTAGGATT 0.882882 -219 GGGTGTAAAGAGGTAAGGATGTTAATATTGC 71 230 0 AGGTAGGATG 0.878225 -371 ATCAAAGGAAGTGTAAGGGTGTAAAGAGGTA 71 246 0 GTGTAGGGTG 0.968131 -355 GGAGGTGGAAAGGTACGGATGTTAAACTTCA 73 37 0 AGGTAGGATG 0.878225 -264 ATATTTGCTAAGGTATGGATGGATCTTACCT 73 157 0 AGGTAGGATG 0.878225 -144 AAATTTCTAAATGTACGGATTCTTTGAAAAT 74 280 0 ATGTAGGATT 0.882882 -224 ACCATCCTAAAGGTATGGGTGTACTGACGAT 75 234 1 AGGTAGGGTG 0.938736 -367 ***** ***** Masking position 10 Map Score: 162.654 Number of sites scoring better than the average of aligned sites = 374 Number in coding regions = 163 Number in noncoding regions = 211 Number of orfs with sites within 600 bp upstream = 193 Fraction of orfs with sites within 600 bp upstream = 0.030999 Motif number 2 CTTTTTTACACCCATGCATTTTGTCATCCAG 5 170 1 CCCATGCATT 0.734362 -431 TAATCTCAGACCCATACATATCTACACCCAT 7 310 1 CCCATACATT 0.945444 -291 CTGATGCGCTCCCGTACACCTTTGACATATA 8 86 1 CCCGTACACT 0.878714 -301 TATACAAACATCCGCACATTTTATAGCTTTC 8 113 1 TCCGCACATT 0.647773 -274 CTGCTTTGAACCCGTACATTTTATTCTATAA 9 243 1 CCCGTACATT 0.96275 -283 GGATTCAGCACCCAAACATTTGAATTTTTTT 9 348 1 CCCAAACATT 0.692279 -178 GGTTACCACACCCGTACACCCTTATCTCATT 10 258 1 CCCGTACACC 0.652267 -343 AGAAAAAACACCCATACATGTTGAAAAATAA 11 317 0 CCCATACATT 0.945444 -284 TAATATGTGACCCATACATTTCCTGTTACAT 11 384 1 CCCATACATT 0.945444 -217 TACCTTTACCTCCGTACACCAATCTTTATTT 12 177 1 TCCGTACACA 0.523379 -424 TATTTTTACCCCCATACCTTTGTATTCTGAA 12 203 1 CCCATACCTT 0.644633 -398 AAATACACAACCCAAACATCCACAGTGCACG 14 109 0 CCCAAACATC 0.368073 -492 TCATTTTCCACCCACACATATATTACCCTTT 15 222 1 CCCACACATT 0.756583 -334 CTTCAAGCACTCCGTACACCACTAATATTAT 16 332 1 TCCGTACACA 0.523379 -168 TTGTTTGACACCCACACATATTTGGTGTTCG 17 87 0 CCCACACATT 0.756583 -514 AAATTTATCACCCATACATACCACTAAATGT 18 237 0 CCCATACATC 0.817744 -315 GTTGTATACATCCGTACACTTTTGTGAACCC 19 210 1 TCCGTACACT 0.741893 -387 CTTTTGTGAACCCAAACATTTTTTGTTTAAT 19 228 1 CCCAAACATT 0.692279 -369 CATGTCAACACCCGTACATATTCAGAGATAA 20 301 1 CCCGTACATT 0.96275 -243 ACTTTTTTCACCCGTACATTTTTAACACCCA 21 90 1 CCCGTACATT 0.96275 -511 AAAAAATAAACCCAAACATTTCTGGAAAACA 23 109 0 CCCAAACATT 0.692279 -313 CATTTTTGAACCCATACATCTTTCAATATGC 24 291 1 CCCATACATT 0.945444 -310 TGAGGTTGCACCCGTGCATATTGAAAGATGT 24 306 0 CCCGTGCATT 0.8048 -295 ACACCAGGGACCCACACATTACCAAAATCAA 25 338 1 CCCACACATA 0.542843 -263 CATATAAACACCCACACATATCTATAAATCC 26 351 1 CCCACACATT 0.756583 -250 TATCTATAAATCCGTACCTTTCCTATATATA 26 369 1 TCCGTACCTT 0.517682 -232 GACCTTACCATCCATACATTTTGGAACGTTA 27 823 0 TCCATACATT 0.873022 -334 CCCTTTTACACCCGTGCATTAAAGGTGTTTG 28 185 1 CCCGTGCATA 0.611668 -416 TCCTATTAAACCCAAACACCTTTAATGCACG 28 197 0 CCCAAACACT 0.386743 -404 ACAACGAGAACCCATACATTACTTTTTTTAA 29 365 1 CCCATACATA 0.868776 -236 GAAGAAAACACCCAAACATATCTAGGCCATC 31 116 1 CCCAAACATT 0.692279 -238 CGGTTTTCAGCCCACACATTTTTTGTTATTT 32 90 1 CCCACACATT 0.756583 -217 CGTTAATGCATCCGTACACCTACATCTTTAC 33 186 1 TCCGTACACT 0.741893 -415 ATCCGATACACCCATACATCATGAAAATAAA 34 242 1 CCCATACATA 0.868776 -359 GTTTATTACATCCGTACATTACTAAGATGTA 35 246 1 TCCGTACATA 0.796637 -355 CAGACTAGAACCCATACATTATTTTACAAAC 38 188 1 CCCATACATA 0.868776 -413 GTACTGTGCGCCCATACATCACATACTTAAA 39 227 0 CCCATACATA 0.868776 -374 CAACCCTCCATCCATACATCCTTTTTAACCC 41 295 1 TCCATACATC 0.640298 -306 TCCTTTTTAACCCATACATATCATTTAGATT 41 313 1 CCCATACATT 0.945444 -288 CATTACAACATCCGTACATTTAGTTGGCTCC 42 256 1 TCCGTACATT 0.911141 -345 CGCAAATACACCCATACACTATTTTTACATC 43 192 1 CCCATACACA 0.649846 -409 CCAATGAAGATCCGTACATCTTAGACACCCT 45 318 1 TCCGTACATT 0.911141 -283 CAGCTTTAAATCCGTACATTTATCAAAAAAA 46 365 0 TCCGTACATT 0.911141 -236 TAATAATACATCCATACATTTATGTTAATTT 47 202 1 TCCATACATT 0.873022 -226 ATCTTTTCCCTCCGTACATTTTTTTTATTTT 48 221 1 TCCGTACATT 0.911141 -250 AGAAAATGCATCCGTGCATTTTCATAAACCC 50 315 1 TCCGTGCATT 0.620599 -286 CTTTCCAACATCCGTACATATTGATTATTGT 51 291 1 TCCGTACATT 0.911141 -310 GATTAGTTAACCCATACATTACATGAAAATC 51 328 0 CCCATACATA 0.868776 -273 TTTCTCTACATCCGTGCATTATTACATAGTA 52 47 1 TCCGTGCATA 0.38458 -554 ATAGTATACATCCGTACATCCGTACATCCGT 52 72 1 TCCGTACATC 0.726386 -529 CATCCGTACATCCGTACATCTGTACACAAAA 52 88 1 TCCGTACATT 0.911141 -513 AAAATTATGACCCATACATTTTGGTGCATGG 53 160 0 CCCATACATT 0.945444 -441 TGCTATTAAATCCGTACATTATTAAAATGTA 54 208 1 TCCGTACATA 0.796637 -350 ATATAACAAATCCATACATTTTAATAATGTA 54 222 0 TCCATACATT 0.873022 -336 CATATTGGCACCCATACATTATAAAATCATC 56 176 0 CCCATACATA 0.868776 -425 ACATTACGCACCCATACATTTATAGTTTTTA 56 271 1 CCCATACATT 0.945444 -330 CTGTTTTACACCCGTACATTTCACAGTTTTT 57 172 1 CCCGTACATT 0.96275 -161 ACATATTCAATCCGTACACTATACACACCCA 61 198 1 TCCGTACACA 0.523379 -403 CATGTAAACACCCGTACATATTAAATAAGTG 63 200 0 CCCGTACATT 0.96275 -401 AAAATTCATATCCGTACACCACATAAGATAT 64 173 0 TCCGTACACA 0.523379 -281 AGAATTAACACCCATGCATTATTGTCTTCGG 64 208 0 CCCATGCATA 0.513652 -246 ACAATCAGCCCATACATACTACTGATATT 66 9 1 CCCATACATC 0.817744 -456 GGACTGTTCACCCGTACATTTTACGTTTCCG 67 233 1 CCCGTACATT 0.96275 -368 TGTATTTTCACCCGTACATCCACGGATGTGT 68 117 1 CCCGTACATC 0.869987 -313 GGCAACTAAATCCGTACATTTCTGAAATTAT 70 180 1 TCCGTACATT 0.911141 -217 AAGTTTAACATCCGTACCTTTCCACCTCCAA 73 39 1 TCCGTACCTT 0.517682 -262 CCTTTCCACCTCCAAACATTTTTTGTAACTT 73 55 1 TCCAAACATT 0.47161 -246 TTTCAAAGAATCCGTACATTTAGAAATTTTT 74 282 1 TCCGTACATT 0.911141 -222 CGTCAGTACACCCATACCTTTAGGATGGTTG 75 232 0 CCCATACCTT 0.644633 -369 ********* * Masking position 7 Map Score: 98.6448 Number of sites scoring better than the average of aligned sites = 238 Number in coding regions = 121 Number in noncoding regions = 117 Number of orfs with sites within 600 bp upstream = 109 Fraction of orfs with sites within 600 bp upstream = 0.0175072 Motif number 3 TTAATTTTCATTTTTTTTTTTTTTTGATTA 1 580 1 TTTTTTTTTT 0.966669 -21 TTCCACTTTTTTTTTTTTTTTTGGATAGCG 3 143 0 TTTTTTTTTT 0.966669 -442 TTTTTTTTTTTTTTTTTTTTCAGATTGAAA 4 169 0 TTTTTTTTTT 0.966669 -132 TAAATTTTTTTTTTTTTTTTTTTTTTTTTT 4 179 0 TTTTTTTTTT 0.966669 -122 TCCTTTTTTTTTTTTTTTTTCTTTTTCATT 5 81 0 TTTTTTTTTT 0.966669 -520 TTTGTGGTGCTTTTTTTTTTGGACAATCTG 12 246 1 TTTTTTTTTT 0.966669 -355 TTTTTTATTATTCTTTTTTTCTGCATAGTT 13 61 1 TTCTTTTTTT 0.914102 -540 TTTTTTAACATTTTTTTTTTTTCAAGTACT 13 456 1 TTTTTTTTTT 0.966669 -145 ATAGAAGCGTTTTTTTTTTTGGTATACTAT 16 83 0 TTTTTTTTTT 0.966669 -417 AACGCGATAATTTTTTTTTCGCGTTTGTTT 16 214 0 TTTTTTTTTC 0.855908 -286 TCTATATCAGTTTTTTTTTTCTTCAAGCAC 16 312 1 TTTTTTTTTT 0.966669 -188 GTCAAGCTTCTTTTTTTTTTCACAATATAT 18 274 0 TTTTTTTTTT 0.966669 -278 GGCTCCAACTTTCTTTTTTTTTCGAAAATG 21 131 1 TTCTTTTTTT 0.914102 -470 TTTTTTTTGGTTTTTTTTTTTTAGTTCTGT 22 31 1 TTTTTTTTTT 0.966669 -570 ATATTTAAAGTTTTTTTTTCCTGAAACTTT 24 338 1 TTTTTTTTTC 0.855908 -263 CTTACTAACATTTTTTTTTTCAAATATGTT 27 40 0 TTTTTTTTTT 0.966669 -1117 ATTTTAGTGTTTTTTTTTTTGGTCCTTGTT 27 763 0 TTTTTTTTTT 0.966669 -394 GCATTTAAATTTTTTTTTTTTTCAATTTTT 27 891 1 TTTTTTTTTT 0.966669 -266 TTATTTTAATTTTTTTTTTTCCTATTGGTC 28 20 0 TTTTTTTTTT 0.966669 -581 TATTTTCCTATTTTTTTTTTCATCTATTAT 29 60 1 TTTTTTTTTT 0.966669 -541 GGCCATCAGATTTTTTTTTTTTCATTTTTC 31 140 1 TTTTTTTTTT 0.966669 -214 TTTAGCGTCTTTTTTTTTTTGCGTTGGTTT 31 234 0 TTTTTTTTTT 0.966669 -120 ACCTACACTGTTTTTTTTTTTTTCACCTTA 33 232 1 TTTTTTTTTT 0.966669 -369 TCCTTTCAGCTTTTTTTTTTTTTGAATTTT 37 171 1 TTTTTTTTTT 0.966669 -430 CCAATTTAACTTTTTTTTTTTTTCATTTTT 39 257 1 TTTTTTTTTT 0.966669 -344 CATGGCCTTGTTTTTTTTTTAACTGAAACT 40 95 1 TTTTTTTTTT 0.966669 -506 TGATTTTTTTTTCTTTTTTTCTTGCGGCTG 41 157 1 TTCTTTTTTT 0.914102 -444 TGTTTTTTAATTTTTTTTTTATCAGATGTT 41 346 1 TTTTTTTTTT 0.966669 -255 TTTGCTGAACTTTTTTTTTTTTTTCATGTT 44 391 1 TTTTTTTTTT 0.966669 -210 AGACACCCTTTTCTTTTTTTCTTTTTTTTT 45 340 1 TTCTTTTTTT 0.914102 -261 TCTTTTTTTCTTTTTTTTTTTTTTTTTTTT 45 351 1 TTTTTTTTTT 0.966669 -250 TTTTTTTTTTTTTTTTTTTTTTTTGGCTTC 45 361 1 TTTTTTTTTT 0.966669 -240 AAATTCACTATTTTTTTTTTTTATATCTGT 45 545 1 TTTTTTTTTT 0.966669 -56 TGATATTATATTCTTTTTTTGATAAATGTA 46 352 1 TTCTTTTTTT 0.914102 -249 ATAATTTCATTTCTTTTTTTTCTATATCCT 48 150 0 TTCTTTTTTT 0.914102 -321 ATTTTTTTTATTTTTTTTTTTGGTTTTTTT 48 238 1 TTTTTTTTTT 0.966669 -233 TTTTTTTTGGTTTTTTTTTTTCGATATTTT 48 251 1 TTTTTTTTTT 0.966669 -220 TGTTTCTATTTTCTTTTTTTAAATCGCGCT 50 43 0 TTCTTTTTTT 0.914102 -558 CTTTCTCTTCTTTTTTTTTTTTCTGAAAAT 51 359 1 TTTTTTTTTT 0.966669 -242 AACTGGGAATTTTTTTTTTTCTTCTAGTGA 62 397 1 TTTTTTTTTT 0.966669 -204 TGGTTGGTAATTTTTTTTTTCATGTTTGCC 62 477 0 TTTTTTTTTT 0.966669 -124 TGGAGTTGCTTTCTTTTTTTGTCTCAGCAG 63 229 1 TTCTTTTTTT 0.914102 -372 AATTCTATTTTTTTTTTTTTCTAATTCAGA 64 233 1 TTTTTTTTTT 0.966669 -221 CCATTTTTTTTTTTTTTTTTTCAGTGATCA 65 421 1 TTTTTTTTTT 0.966669 -180 AAAATATTGATTCTTTTTTTATAAAAATAT 66 35 0 TTCTTTTTTT 0.914102 -430 TGCTATTTGATTTTTTTTTTATCTAGCTTG 67 117 0 TTTTTTTTTT 0.966669 -484 GTTGTTGTTGTTTTTTTTTTGACTGTATTT 68 94 1 TTTTTTTTTT 0.966669 -336 GAGAGGAAGATTTTTTTTTCACTCAAAACC 69 264 1 TTTTTTTTTC 0.855908 -102 CTTTGATTACTTTTTTTTTTCTTCTCTCAG 71 270 1 TTTTTTTTTT 0.966669 -331 TTTTTTTCTTTTTTTTTTTTCTGGTGGCTT 72 277 1 TTTTTTTTTT 0.966669 -226 CTATTTATTTTTTTTTTTTTCAAAGCATCT 72 377 0 TTTTTTTTTT 0.966669 -126 CATTTAGAAATTTTTTTTTTTTCCGCAAGA 74 298 1 TTTTTTTTTT 0.966669 -206 GTTTGTTTTTTTTTCCTTCTTTTCT 75 6 1 TTTTTTTTTC 0.855908 -595 GATTTCACCGTTCTTTTTTCATTTATACAA 75 293 0 TTCTTTTTTC 0.685495 -308 ACTAATATTATTTTTTTTTCAGTGGAAGGG 75 547 1 TTTTTTTTTC 0.855908 -54 ********** Masking position 5 Map Score: 123.832 Number of sites scoring better than the average of aligned sites = 8319 Number in coding regions = 701 Number in noncoding regions = 7618 Number of orfs with sites within 600 bp upstream = 1445 Fraction of orfs with sites within 600 bp upstream = 0.232091 Motif number 4 ACAATGCCTCCGCTGGCTGCATTGTC 1 6 0 CGCTGGCGCA 0.527977 -595 GAGAAGGAGTGCCAGGCCGGCTAAGCCCACT 1 54 0 GCCAGGCGGC 0.859003 -547 GTGTACTATACGCTGGCCGGGGCCGTGGCAA 5 360 1 CGCTGGCGGG 0.808732 -241 GTGCTGGAAGCCCAGGCAGCGGTGGGGGCCA 6 416 1 CCCAGGCGCG 0.918135 -185 CCGTCATCATTGCTGGCAGAAATCCCATCTT 10 405 1 TGCTGGCGAA 0.55238 -196 GTTCGTTCCGGCCAGGCCGCGTGAGCCTATA 11 128 0 GCCAGGCGCG 0.898011 -473 ATCATTCTTGCGCAGGCGGAGGATGGGAAAG 12 363 1 CGCAGGCGAG 0.942851 -238 CTCCCAACTGCGCAGGCAGACATAGCTTGAC 12 435 1 CGCAGGCGAC 0.863084 -166 GCCCCCTGGCTCTAGGCCGAGAAAATGTTAA 14 379 1 TCTAGGCGAG 0.892624 -222 AGTAGTGCTGTCTAGGCGGAGATTATTGAAA 15 321 1 TCTAGGCGAG 0.892624 -235 CTCCGCGCAATCTAGGCAGACGCCGGGTTTG 15 397 0 TCTAGGCGAC 0.760672 -159 TCCGCCTAAGTCTAGGCAGCAAGCCACAACT 17 320 0 TCTAGGCGCA 0.697901 -281 TCGAAGGTACCGTAGGCAGAGGCCTATCCTC 21 249 1 CGTAGGCGAG 0.895782 -352 ACGCTTAGCCGCTAGGCAGAACGCCTAGTTT 21 295 0 GCTAGGCGAA 0.807889 -306 GTTCAGTCTCTCCAGGCAGGACGACACGAGA 27 676 0 TCCAGGCGGA 0.879402 -481 ATCATTACTTTGTAGGCGGGAAATAAGAGGT 27 730 1 TGTAGGCGGA 0.712865 -427 GCAGCAAGAGCGTAGGCGGACTCTGCTGGAA 33 412 0 CGTAGGCGAC 0.766698 -189 CCTTCCCTCCCCCTGGCGGAACCCATCATCC 34 434 0 CCCTGGCGAA 0.783151 -167 TCCGCCTATGTCCAGGCGGAGTGCTAAGAGG 35 340 0 TCCAGGCGAG 0.941026 -261 TAGGAGCATAGCTAGGCCGAAGTATCATGAA 36 107 0 GCTAGGCGAA 0.807889 -337 GAGATTTCCCTCCAGGCGGGAACACTCCTGG 38 423 1 TCCAGGCGGA 0.888689 -178 ACCACCACGCGGCAGGCCGAGGCAAACAGTA 39 340 1 GGCAGGCGAG 0.904971 -261 AAACAGTACGCCTTGGCGGGGACGCCGAAGC 39 363 1 CCTTGGCGGG 0.788267 -238 TTGCTTCTTTGCCAGGCGGGAGAATGAAGCC 42 407 1 GCCAGGCGGA 0.889179 -194 AACACACTTCGGCAGGCCGGCAACAAGAAGG 49 20 1 GGCAGGCGGC 0.783892 -281 CTAGGCTGATGGTAGGCAGGGCGATGCCATA 49 93 1 GGTAGGCGGG 0.831802 -208 AAGAACGTAATCTAGGCTGAGCCGCGCCTTT 52 187 0 TCTAGGCGAG 0.892621 -414 TGATTCTCCCCGTAGGCGGCGAGTAATATCC 53 299 1 CGTAGGCGCG 0.825813 -302 ACCGCAATGGTCTAGGCGGGCCGCTTTTCGA 54 281 0 TCTAGGCGGC 0.760146 -277 AAGCTCCCTTCCCTGGCAGGATCAGTCCTGG 60 348 0 CCCTGGCGGA 0.76614 -253 GTTTTTCACCCGTTGGCCGAAGCGTTGAGAA 61 272 0 CGTTGGCGAA 0.527926 -329 CAACGGGGCTCCCAGGCTGAGGAAATGCTTC 63 334 0 CCCAGGCGAG 0.963996 -267 AGAAGCGGTCTCCAGGCAGAACAAATTCTGA 66 115 0 TCCAGGCGAA 0.889309 -350 GCACATGGTACCCAGGCAGAGTTCCCCCCAG 66 189 0 CCCAGGCGAG 0.96491 -276 GAAGTAACTGTCTAGGCCGCGGACATTTTTC 67 340 0 TCTAGGCGCG 0.820958 -261 ******* *** Masking position 6 Map Score: 21.722 Number of sites scoring better than the average of aligned sites = 400 Number in coding regions = 284 Number in noncoding regions = 116 Number of orfs with sites within 600 bp upstream = 111 Fraction of orfs with sites within 600 bp upstream = 0.0178285 Motif number 5 TAATTTTCATTTTTTTTTTTTTTTGATTAG 1 581 1 TTTTTTTTTT 0.914607 -20 AATCTCTTACTTTCTTTATTTTGACTCTTAG 2 398 1 TTTCTTTTTT 0.77642 -66 TCCACTTTTTTTTTTTTTTTTGGATAGCGAG 3 141 0 TTTTTTTTTT 0.914607 -444 TTTTTTTTTTTTTTTTTTTTTCAGATTGAAA 4 169 0 TTTTTTTTTT 0.914607 -132 TATAAATTTTTTTTTTTTTTTTTTTTTTTTT 4 180 0 TTTTTTTTTT 0.914607 -121 CTTTTTTTTTTTTTTTTTCTTTTTCATTGTT 5 78 0 TTTTTTTCTT 0.9261 -523 TCCGTGAAGATTTTTTTTCTTCGTTTCGTTT 5 214 1 TTTTTTTCTT 0.9261 -387 ATATATCATGTTTCTTTGTTTCTATATCAAA 7 23 0 TTTCTTTTTT 0.77642 -578 AACATTTGAATTTTTTTTCATGTCGATTGTG 9 362 1 TTTTTTTCAT 0.754373 -164 GTGAATGATATTTTTTTGCATTTTTTGAGGC 10 14 0 TTTTTTTCAT 0.754373 -587 TTCAGAATGCTTTCTTTATTTCACGACGGTT 10 231 1 TTTCTTTTTT 0.77642 -370 TTTTTTAACATTTTTTTTTTTTCAAGTACTC 13 456 1 TTTTTTTTTT 0.914607 -145 TATAGAAGCGTTTTTTTTTTTGGTATACTAT 16 83 0 TTTTTTTTTT 0.914607 -417 TATATCAGTTTTTTTTTTCTTCAAGCACTCC 16 314 1 TTTTTTTCTT 0.9261 -186 GGGTGATAAATTTTTTTCCATATATTGTGAA 18 255 1 TTTTTTTCAT 0.754373 -297 ATTTGAAAGATTTTTTTCTATTAGGAGCCGT 19 257 1 TTTTTTTTAT 0.724129 -340 ATCTATTATTTTTCTTTTCTTTTCTTTTGCG 21 28 1 TTTCTTTCTT 0.802495 -573 CGGCTCCAACTTTCTTTTTTTTTCGAAAATG 21 130 1 TTTCTTTTTT 0.77642 -471 TTTTTTTTGGTTTTTTTTTTTTAGTTCTGTA 22 31 1 TTTTTTTTTT 0.914607 -570 CCCTTCTCTCTTTTTTTCTTTATATCCTCCA 22 360 0 TTTTTTTTTT 0.914607 -241 TCTCCGTTGATTTTTTTCCTTCTTAGTGATT 25 538 1 TTTTTTTCTT 0.9261 -63 TTCTTAGTGATTTTTTTGCATTAAATCCCAG 25 557 1 TTTTTTTCAT 0.754373 -44 GATTTTAGTGTTTTTTTTTTTGGTCCTTGTT 27 763 0 TTTTTTTTTT 0.914607 -394 CGCATTTAAATTTTTTTTTTTTTCAATTTTT 27 890 1 TTTTTTTTTT 0.914607 -267 TTTATTTTAATTTTTTTTTTTCCTATTGGTC 28 20 0 TTTTTTTTTT 0.914607 -581 TTTTCCTATTTTTTTTTTCATCTATTATTGT 29 62 1 TTTTTTTCAT 0.754373 -539 ATCAGATTTTTTTTTTTTCATTTTTCATTTT 31 144 1 TTTTTTTCAT 0.754373 -210 ATTTAGCGTCTTTTTTTTTTTGCGTTGGTTT 31 234 0 TTTTTTTTTT 0.914607 -120 ACTTTCTTGCTTTTTTTTCTTGAGACTCCCC 32 137 1 TTTTTTTCTT 0.9261 -170 CTACACTGTTTTTTTTTTTTTCACCTTATGA 33 234 1 TTTTTTTTTT 0.914607 -367 GACAGCGATCTTTTTTTGTATCAAGACTTCT 34 286 0 TTTTTTTTAT 0.724129 -315 TTACTGATTGTTTTTTTGCTTAATCTCCTTC 34 578 0 TTTTTTTCTT 0.9261 -23 CTTTCAGCTTTTTTTTTTTTTGAATTTTTGA 37 173 1 TTTTTTTTTT 0.914607 -428 TTAACTTTTTTTTTTTTTCATTTTTTAGCTT 39 262 1 TTTTTTTCAT 0.754373 -339 ATGAATTGATTTTTTTTTCTTTTTTTCTTGC 41 151 1 TTTTTTTCTT 0.9261 -450 GTTTTTTAATTTTTTTTTTATCAGATGTTGT 41 347 1 TTTTTTTTAT 0.724129 -254 TAATGCTGGATTTTTTTATTTAAACCTAATT 43 85 0 TTTTTTTTTT 0.914607 -516 TGGTTTTGTCTTTTTTTACTTCACAACTAAT 43 112 0 TTTTTTTCTT 0.9261 -489 GAACTTTTTTTTTTTTTTCATGTTTTTCAGA 44 397 1 TTTTTTTCAT 0.754373 -204 CACCCTTTTCTTTTTTTCTTTTTTTTTTTTT 45 343 1 TTTTTTTTTT 0.914607 -258 CTTTTTTTTTTTTTTTTTTTTTTTTGGCTTC 45 360 1 TTTTTTTTTT 0.914607 -241 AAATTCACTATTTTTTTTTTTTATATCTGTT 45 545 1 TTTTTTTTTT 0.914607 -56 TATAATTTCATTTCTTTTTTTTCTATATCCT 48 150 0 TTTCTTTTTT 0.77642 -321 CTCCGTACATTTTTTTTATTTTTTTTTTTGG 48 230 1 TTTTTTTTTT 0.914607 -241 TTTTTTTTGGTTTTTTTTTTTCGATATTTTT 48 251 1 TTTTTTTTTT 0.914607 -220 TTGTTTCTATTTTCTTTTTTTAAATCGCGCT 50 43 0 TTTCTTTTTT 0.77642 -558 CTTTCTCTTCTTTTTTTTTTTTCTGAAAATC 51 359 1 TTTTTTTTTT 0.914607 -242 TGGGTCATAATTTTTTTTCTTGCCTTCAAAA 53 177 1 TTTTTTTCTT 0.9261 -424 TGGTCCCATTTTTTTTTACTTTGAATTTCGT 59 176 0 TTTTTTTCTT 0.9261 -425 AACGATAGATTTTCTTTATTTTACATTGAAC 59 216 1 TTTCTTTTTT 0.77642 -385 AGTATGAAAATTTTTTTATTTTTTCTTCAGA 59 475 0 TTTTTTTTTT 0.914607 -126 AGTTATACTTTTTTTTTATTTATCTATTTTT 60 279 1 TTTTTTTTTT 0.914607 -322 CTGGGAATTTTTTTTTTTCTTCTAGTGAATT 62 399 1 TTTTTTTCTT 0.9261 -202 GTTGGTAATTTTTTTTTTCATGTTTGCCGTC 62 474 0 TTTTTTTCAT 0.754373 -127 ATGGAGTTGCTTTCTTTTTTTGTCTCAGCAG 63 228 1 TTTCTTTTTT 0.77642 -373 TAATTCTATTTTTTTTTTTTTCTAATTCAGA 64 232 1 TTTTTTTTTT 0.914607 -222 GTTTTCCATTTTTTTTTTTTTTTTTTCAGTG 65 416 1 TTTTTTTTTT 0.914607 -185 CCGAAAACAGTTTCTTTGCTTAAACAACCTT 66 411 1 TTTCTTTCTT 0.802495 -54 GCTATTTGATTTTTTTTTTATCTAGCTTGTA 67 115 0 TTTTTTTTAT 0.724129 -486 TTACATACTTTTTCTTTGCTTGATTCCTTTG 67 576 0 TTTCTTTCTT 0.802495 -25 TTGATTACTTTTTTTTTTCTTCTCTCAGTTT 71 272 1 TTTTTTTCTT 0.9261 -329 TTTCAATAATTTTTTTTGCTTTATGGGTGTT 72 238 0 TTTTTTTCTT 0.9261 -265 AAATATTCTCTTTTTTTTCTTTTTTTTTTTT 72 266 1 TTTTTTTCTT 0.9261 -237 TCTATTTATTTTTTTTTTTTTCAAAGCATCT 72 377 0 TTTTTTTTTT 0.914607 -126 TATTTCACAATTTTTTTACTTAGTTCTTTTT 74 196 1 TTTTTTTCTT 0.9261 -308 ATTTAGAAATTTTTTTTTTTTCCGCAAGAAA 74 299 1 TTTTTTTTTT 0.914607 -205 GTTTGTTTTTTTTTCCTTCTTTTCTTTC 75 8 1 TTTTTTTCTT 0.9261 -593 ******* *** Masking position 6 Map Score: 116.507 Number of sites scoring better than the average of aligned sites = 8213 Number in coding regions = 988 Number in noncoding regions = 7225 Number of orfs with sites within 600 bp upstream = 1733 Fraction of orfs with sites within 600 bp upstream = 0.278349 Motif number 6 ATCAAAAAAAAAAAAAAATGAAAATTAAAAGTTT 1 574 0 AAAAAGAAAA 0.835831 -27 CTCGCTATCCAAAAAAAAAAAAAAAAGTGGAACT 3 141 1 AAAAAAAAAA 0.810674 -444 TTTCAATCTGAAAAAAAAAAAAAAAAAAAAAAAA 4 169 1 AAAAAAAAAA 0.810674 -132 AGAAAAAAAAAAAAAAAAAGGAAAAACTTTATTT 5 89 1 AAAAAGGAAA 0.823421 -512 ATATTAAACGAAACGAAGAAAAAAAATCTTCACG 5 216 0 AAAAAAAAAA 0.810674 -385 AACCAAGACAAAAATAACTAGCAACA 6 585 1 AAAAAAGCAA 0.573221 -16 GGGGTGCTGTAAAACAAATGAAAATGCGTTGTAT 7 64 0 AAAAAGAAAA 0.835831 -537 TAAAGTCGCAAAAAAAAATGGCAGCGCAGCCTCT 7 388 1 AAAAAGGCAG 0.505801 -213 TGTGGGTGTCAAACAAAGAGACAATGTAATGAGA 17 102 1 AAAAAGACAA 0.635521 -499 ATATATTGTGAAAAAAAAAAGAAGCTTGACTTTC 18 274 1 AAAAAAGAAG 0.715373 -278 AAAATCTTTCAAATTAAACAAAAAATGTTTGGGT 19 237 0 AAAAAAAAAA 0.810674 -360 CCCCAGCCGCAAAAGAAAAGAAAAGAAAAATAAT 21 32 0 AAAAAGAAAA 0.835831 -569 ATCATTTTCGAAAAAAAAAGAAAGTTGGAGCCGG 21 129 0 AAAAAGAAAG 0.765414 -472 GAACTAAAAAAAAAAAACCAAAAAAAAGTCGAAA 22 24 0 AAAAAAAAAA 0.810674 -577 GAGAGAAGGGAAAATAATGGAAAGTTACCAGTGT 22 381 1 AAAAAGAAAG 0.765414 -220 CAGTCTTACAAAATAAAAAAGAAGAACGACACCA 23 77 0 AAAAAAGAAG 0.715373 -345 TTCCACAGAAAAATGAAATGACAAAATGAGAAAG 23 165 0 AAAAAGACAA 0.635521 -257 TCTTTTTTAAAAAAGAACTGAAAAATCAAAAACG 24 61 1 AAAAAGAAAA 0.835831 -540 TCCAATAGGAAAAAAAATTGAAAAAAAAAAAAAT 27 899 0 AAAAAGAAAA 0.835831 -258 ACAACTAGGGAAACAAACAAGAAAAATTTATAAT 28 71 0 AAAAAAGAAA 0.796824 -530 ATAGATGAAAAAAAAAATAGGAAAATAAAACAAT 29 53 0 AAAAAGGAAA 0.823421 -548 CTTCACAATTAAAAAAAATAAAAGAGTACATATT 29 152 0 AAAAAAAAAG 0.732914 -449 TCTTCGGATAAAAATAAAAAGAAGGCGGTGAAAA 29 407 0 AAAAAAGAAG 0.715373 -194 AGAAAATGAGAAAAAAATGAAAAATGAAAAAAAA 31 154 0 AAAAAAAAAA 0.810674 -200 TTTTCAATAAAAATAAATAAGAAAATGAGAAAAA 31 173 0 AAAAAAGAAA 0.796824 -181 TAACCGACGCAAACAAATTGGAAAAACCAACGCA 31 211 1 AAAAAGGAAA 0.823421 -143 TGTGTGGTGTAAAATAACAAAAAATGTGTGGGCT 32 98 0 AAAAAAAAAA 0.810674 -209 ATAAGGTGAAAAAAAAAAAAACAGTGTAGGTGCA 33 229 0 AAAAAAACAG 0.484481 -372 CACAAACTTCAAAATAAAAGACAGTGACATCCGA 34 206 1 AAAAAGACAG 0.527731 -395 TCAAAAATTCAAAAAAAAAAAAAGCTGAAAGGAA 37 170 0 AAAAAAAAAG 0.732914 -431 GGGACCTCCGAAAGCAAATGAAAGTAAAAATTCA 37 201 0 AAAAAGAAAG 0.765414 -400 TCAAGCTAAAAAATGAAAAAAAAAAAAAGTTAAA 39 261 0 AAAAAAAAAA 0.810674 -340 CAGCCGCAAGAAAAAAAGAAAAAAAAATCAATTC 41 153 0 AAAAAAAAAA 0.810674 -448 ATCTGATAAAAAAAAAATTAAAAAACAATAATCT 41 339 0 AAAAAAAAAA 0.810674 -262 TACTCTGAGTAAAATAATTGACAGCGCAAATACA 43 168 1 AAAAAGACAG 0.527731 -433 GAAAAACATGAAAAAAAAAAAAAAGTTCAGCAAA 44 391 0 AAAAAAAAAA 0.810674 -210 AAAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAGG 45 346 0 AAAAAGAAAA 0.835831 -255 TTCGGAAGCCAAAAAAAAAAAAAAAAAAAAAAAA 45 361 0 AAAAAAAAAA 0.810674 -240 TACTATGCATAAAAAAAGGGGAAGTGTTTAACAA 46 77 1 AAAAAGGAAG 0.749277 -524 CGAAAAAAAAAAACCAAAAAAAAAAATAAAAAAA 48 240 0 AAAAAAAAAA 0.810674 -231 CGATTTAAAAAAAGAAAATAGAAACAAATAGCAA 50 47 1 AAAAAAGAAA 0.796824 -554 AAATAGCAATAAACAAAAAGAAAAGTAACGCTAT 50 72 1 AAAAAGAAAA 0.835831 -529 AGAAAAAAAAAAAAGAAGAGAAAGGATTAGTTAA 51 349 0 AAAAAGAAAG 0.765414 -252 AAAAGTATCGAAAGGAACAAGAAAGATGTTTTCC 55 211 0 AAAAAAGAAA 0.796824 -142 TACAAGTATCAAAGAAACAAGAAAGACAGCAAAC 57 299 1 AAAAAAGAAA 0.796824 -34 GACGAAATTCAAAGTAAAAAAAAATGGGACCACG 59 175 1 AAAAAAAAAA 0.810674 -426 CTGTTTCACCAAAGGAAATAGAAAGAAAAAATCA 59 554 1 AAAAAAGAAA 0.796824 -47 TAGAAAGAAAAAATCAATTAGAAGAAAACAAAAA 59 572 1 AAAAAAGAAG 0.715373 -29 CAATTAGAAGAAAACAAAAAACAAA 59 586 1 AAAAAAACAA 0.594558 -15 AAAAATAGATAAATAAAAAAAAAGTATAACTCGA 60 276 0 AAAAAAAAAG 0.732914 -325 AGGTAAAGGGAAAGGAAATAGAAATATGGTTGGT 62 499 0 AAAAAAGAAA 0.796824 -102 ATTGTGCGCCAAAAAAAGAGAAAACCGTGAGCCG 63 261 1 AAAAAGAAAA 0.835831 -340 AAAAAAAAAAAAAAAAAATGGAAAACAGTTGTGC 65 408 0 AAAAAGGAAA 0.823421 -193 GATAAAAAAAAAATCAAATAGCAAGCTATTCTGT 67 124 1 AAAAAAGCAA 0.573221 -477 ATACAGTCAAAAAAAAAACAACAACAACAACATT 68 88 0 AAAAAAACAA 0.594558 -342 ATGGATCCAGAAAGGAACTGGCAACTAAATCCGT 70 161 1 AAAAAGGCAA 0.614944 -236 CTCTATTGAAAAAGCAATAGGAAGAGCTCTGAAA 70 310 0 AAAAAGGAAG 0.749277 -87 TTTTTAGTAAAAAGAACAAGAAGAGAATAAAAC 71 10 1 AAAAAAGAAG 0.715373 -591 GAGAATGGAAAAACTAATGAAAAATTCAGCCCTA 71 134 1 AAAAAAAAAA 0.810674 -467 ACCAACAATCAAATAAATTGAAAA 71 587 1 AAAAAGAAAA 0.835831 -14 CCACCAGAAAAAAAAAAAAGAAAAAAAAGAGAAT 72 270 0 AAAAAGAAAA 0.835831 -233 AAAAAAAAAAAAATAAATAGAAAAGTTTGTAGAC 72 387 1 AAAAAGAAAA 0.835831 -116 AACCAGAAAGAAAAGAAGGAAAAAAAAACAAAC 75 10 0 AAAAAAAAAA 0.810674 -591 GAATAGATAGAAAGAAACCAGAAAGAAAAGAAGG 75 25 0 AAAAAAGAAA 0.796824 -576 *** ** ***** Masking position 7 Map Score: 73.5221 Number of sites scoring better than the average of aligned sites = 7597 Number in coding regions = 1677 Number in noncoding regions = 5920 Number of orfs with sites within 600 bp upstream = 1750 Fraction of orfs with sites within 600 bp upstream = 0.281079 Motif number 7 TTCTAGCGGCTGGGAAAAAGGCGATATTCA 6 314 0 TGGGAAAAAG 0.830465 -287 CAGCCTTGCCTGGGAAAAAGTTAGGGGTCA 8 195 0 TGGGAAAAAG 0.830465 -192 CCTCTAGCTGAGGGAAACAGAACTGGTAGC 11 160 0 AGGGAAACAG 0.852221 -441 CCTCAGCTAGAGGGAAACAGAGAGAATTTC 11 177 1 AGGGAAACAG 0.852221 -424 TAATGCATTGTGAAAAAAAGTGGTTGAAAA 11 290 0 TGAAAAAAAG 0.741641 -311 TGAACTATGCAGAAAAAAAGAATAATAAAA 13 63 0 AGAAAAAAAG 0.706245 -538 CCTTCGGAAAGGGAAAAAAGCGGCTAGAGG 14 338 0 GGGAAAAAAG 0.792114 -263 TGACTCAGTAGGGGAAAAAGTACTGTTGAT 19 60 1 GGGGAAAAAG 0.800752 -537 GAGGATATAAAGAAAAAAAGAGAGAAGGGA 22 362 1 AGAAAAAAAG 0.706245 -239 CAAACATTTCTGGAAAACAGTCTTACAAAA 23 98 0 TGGAAAACAG 0.867167 -324 CGGCCCTAGCTGAAAAAAAGATACGTTTCT 27 862 0 TGAAAAAAAG 0.741641 -295 CTTCACCATAAGGGAAAAAGACCAATATTC 35 158 0 AGGGAAAAAG 0.804023 -443 AACCCGCTAGGGAGAAAAAGAAGGAATTCT 38 294 1 GGAGAAAAAG 0.712974 -307 ACCAGCCGCAAGAAAAAAAGAAAAAAAAAT 41 159 0 AGAAAAAAAG 0.706245 -442 TTCATTGGGATGGAAAACAGGCAAGTAAAA 45 296 0 TGGAAAACAG 0.867167 -305 AAAAAAAAAAAGAAAAAAAGAAAAGGGTGT 45 342 0 AGAAAAAAAG 0.706245 -259 TTCACTGTATTGAAAAACAGATATAAAAAA 45 561 0 TGAAAAACAG 0.801392 -40 TATACTGACAGGGGAAAAAGCAAATTAATT 48 106 0 GGGGAAAAAG 0.800752 -365 GCACGGATGTAGAGAAACAGAAACGAGGAT 52 34 0 AGAGAAACAG 0.780914 -567 GGAAGAAAGAAGGAAAAAAGGTAGGACATG 53 83 0 AGGAAAAAAG 0.795491 -518 AGTCTTTTAAGGAAAAACAGTGCGGAAAAA 58 129 1 GGAAAAACAG 0.768006 -472 AAATATGTCAAGGAAAACAGCGAGTTTGTT 58 317 1 AGGAAAACAG 0.845384 -284 GCCGAAGCGTTGAGAAACAGCCAAATTTTC 61 258 0 TGAGAAACAG 0.809737 -343 GGCCAACGGGTGAAAAACAGCGGCAGAAGG 61 285 1 TGAAAAACAG 0.801392 -316 GTGCGTCCAGTGAGAAACAGCAAGCAGTGG 63 395 0 TGAGAAACAG 0.809737 -206 AAAAAAAAAATGGAAAACAGTTGTGCGTCG 65 404 0 TGGAAAACAG 0.867167 -197 TTAACAAAAGTGAAAAAAAGCAAGGATATT 74 328 0 TGAAAAAAAG 0.741641 -176 TGTGATATGAGGGAAAACAGCAAAAGGGTG 75 162 0 GGGAAAACAG 0.842668 -439 ********** Masking position 5 Map Score: 17.5973 Number of sites scoring better than the average of aligned sites = 967 Number in coding regions = 585 Number in noncoding regions = 382 Number of orfs with sites within 600 bp upstream = 335 Fraction of orfs with sites within 600 bp upstream = 0.0538066 Motif number 8 CAGATATATGGGAAAATTTTCTCCGGAAGA 1 479 1 GGAAAATTTT 0.669808 -122 CAGTGAGAAGTGAAAAATTTTTTTTCAATC 4 147 1 TGAAAAATTT 0.686919 -154 GCATTTTCCGTGAAGATTTTTTTTCTTCGT 5 208 1 TGAAGATTTT 0.779427 -393 TGAATTATATTGAAGATTTTATAACTAGTG 12 519 1 TGAAGATTTT 0.779427 -82 GAGGGTACGTTGAAACTTTTGCCTTTCCAC 15 425 1 TGAAACTTTT 0.884691 -131 AAAAAAGTTTGGAAACTTTTTTGTATAATT 20 340 0 GGAAACTTTT 0.792324 -204 TTTAATTTTTTGAAACATTTTTTTCATCCT 23 137 1 TGAAACATTT 0.804935 -285 TTTTTTTTCCTGAAACTTTTTTTTCGCACA 24 349 1 TGAAACTTTT 0.884691 -252 ATATATGTAATGAAGCATTTTCATTGGGTT 27 265 1 TGAAGCATTT 0.781394 -892 TTTATTAGTGTGAAGCATTTAAAGTAACTT 32 258 1 TGAAGCATTT 0.781394 -49 TCGTGTCTTGTGAAACTTTTTCAATATTTA 34 19 1 TGAAACTTTT 0.884691 -582 TTTTTTTAACTGAAACTTTTTTGGCCGTTT 40 108 1 TGAAACTTTT 0.884691 -493 AAGACCAGCTTGAAAAATTTGAAATTTCAA 41 487 1 TGAAAAATTT 0.686919 -114 TATTTAAAATTGAAGCTTTTAAAATTGAAG 43 12 1 TGAAGCTTTT 0.869211 -589 CTTTTAAAATTGAAGCTTTTAAAATCAAAC 43 27 1 TGAAGCTTTT 0.869211 -574 TAGAACGCATTGAAACTTTTCCCATCTCAA 45 449 1 TGAAACTTTT 0.884691 -152 TTAGCACCTTTGAAAATTTTGCGTCAGCTC 46 422 0 TGAAAATTTT 0.803126 -179 TGAGAAATCTTGAAAAATTTTAGCACCTTT 46 441 0 TGAAAAATTT 0.686919 -160 AATGATAGTTTGAAACATTTTAGGAAATTC 47 307 0 TGAAACATTT 0.804935 -121 TATATCCTGCGGAAAATTTTTTTATACTGA 48 128 0 GGAAAATTTT 0.669808 -343 TGCTGACTAAGGAAACTTTTCATCTCAGAA 48 308 1 GGAAACTTTT 0.792324 -163 ACATTGAGGTTGAAGAATTTGGACAATCAT 58 78 1 TGAAGAATTT 0.655235 -523 ATGAGAAAAGGGAAGCTTTTATGGAGGAGT 58 537 0 GGAAGCTTTT 0.7677 -64 GCAAGAAGTATGAAAATTTTTTTATTTTTT 59 482 0 TGAAAATTTT 0.803126 -119 AAGAGACAAATGAAAAATTTTTTTCATGGA 65 454 0 TGAAAAATTT 0.686919 -147 TGCCTTGAGAGGAAGATTTTTTTTTCACTC 69 258 1 GGAAGATTTT 0.637308 -108 ********** Masking position 8 Map Score: 12.6857 Number of sites scoring better than the average of aligned sites = 902 Number in coding regions = 574 Number in noncoding regions = 328 Number of orfs with sites within 600 bp upstream = 312 Fraction of orfs with sites within 600 bp upstream = 0.0501124 Motif number 9 ACAGAGAGAATTTCCGCCCAGGTCAAAGGCC 11 193 1 TTTCCGCCCG 0.960036 -408 CCAGGAGTAATTGCCGCCGCGTCCGCCTAAG 17 341 0 TTGCCGCCGG 0.929199 -260 GTTTGTTACTTGGCCGCCCCTTTATATTGAC 19 33 1 TGGCCGCCCT 0.955238 -564 CTGTGTGGTATTTCCTCCCGTCTCTGCGTGC 27 623 1 TTTCCTCCCT 0.737501 -534 CAGTAGACGGTGGCCGCCGTGGATGGGAAAT 28 328 1 TGGCCGCCGG 0.885925 -273 ACCGTCAGCGTTGCCGCACCGACGGACGTCT 34 389 0 TTGCCGCACG 0.893007 -212 GGACCTCCGATTGCCTCCCTGAGGGTGAGAT 35 422 1 TTGCCTCCCG 0.941929 -179 TATACCTTTTTAGCCGCCCATCTTCTGCCTT 41 252 1 TAGCCGCCCT 0.767517 -349 TCGGCCTAACTTTCCGCCCGGAAAAGAGCGG 43 320 1 TTTCCGCCCG 0.960036 -281 AAAGATGATATGGCCTCCGATGAGAAGAAAG 44 282 0 TGGCCTCCGT 0.475968 -319 TTAATATGTTTTGCCGCCCTTCATAAGAGGG 46 122 1 TTGCCGCCCT 0.973019 -479 CGCCTTCTTGTTGCCGGCCTGCCGAAGTGTG 49 22 0 TTGCCGGCCG 0.814319 -279 GATGGTGCCATTTCCGCCCTTCTCGTTAGAG 52 226 1 TTTCCGCCCT 0.924527 -375 CCTCCATCTGCGGCCGCCCGGAGGGGACGCA 53 254 0 CGGCCGCCCG 0.807983 -347 ATGAGGTTTGTTTCCGCCCATGTGCTCCCTC 53 400 0 TTTCCGCCCT 0.924527 -201 TCGCTTCTGTTGTCCGCCCAGCGGAGAAGCC 54 335 0 TGTCCGCCCG 0.934276 -223 TTACTCACTTTTTCCGCACTGTTTTTCCTTA 58 136 0 TTTCCGCACG 0.739248 -465 TACCTTCGGCTTGCCTCACTGCGTTGGGGCT 63 441 1 TTGCCTCACG 0.65686 -160 CATGATACCTTTGCCTCCCGTTTGGCAAAAT 71 466 1 TTGCCTCCCT 0.892139 -135 ATTCTTCGTTTTGCCACCCTTTTGCTGTTTT 75 148 1 TTGCCACCCT 0.671112 -453 ********* * Masking position 5 Map Score: 9.83484 Number of sites scoring better than the average of aligned sites = 235 Number in coding regions = 141 Number in noncoding regions = 94 Number of orfs with sites within 600 bp upstream = 74 Fraction of orfs with sites within 600 bp upstream = 0.0118856 Motif number 10 ACCCGAAAGTTTCACTTTACCCCATGGCAGA 8 238 1 TTCCTTTACC 0.906469 -149 AAAAATATCATTCACTTTCCCTTCTCAGCAA 10 30 1 TTCCTTTCCC 0.913198 -571 TTCGTTTATTTCCACTTTCCCTTATTTAGTA 10 193 1 TCCCTTTCCC 0.853347 -408 TTCTGGCATTTTCGTTCTCCCAACTGCGCAG 12 419 1 TTCTTCTCCC 0.876366 -182 AAAATTCCTTTTCTCTCTACCTTTGCTAATA 15 78 1 TTCCTCTACC 0.939863 -478 AAAATACTACTTCTCTTCACCCAAAAAAAGG 15 248 0 TTCCTTCACC 0.927791 -308 GAGCGACTCTTTCTTTTCACCAAAACGCCCT 15 517 0 TTCTTTCACC 0.842976 -39 ATGCTTACTGTTCTCTTCCCCACCGGCAGCT 19 323 1 TTCCTTCCCC 0.933099 -274 GCCACGCTACTCCCCTCCACCGTTATGAATC 22 517 1 TCCCTCCACC 0.919743 -84 TTTCATAAGGTTCATTCCACCTCGTCTCTTG 25 163 0 TTCTTCCACC 0.89645 -438 AATTTTATATTCCTCTCCACCTTCTATTGCA 31 48 1 TCCCTCCACC 0.919743 -306 GTGGAAAGCCTTCCCTCCCCCTGGCGGAACC 34 442 0 TTCCTCCCCC 0.957431 -159 GCCGGTGGGCTTCATTCTCCCGCCTGGCAAA 42 414 0 TTCTTCTCCC 0.876366 -187 AATTTGTTTTTCCTTTCCACCTCAGTGCGCT 47 228 1 TCCTTCCACC 0.827235 -200 ACGGATTGACTTCCCTTTCCCCAAGGGGCCG 49 51 0 TTCCTTTCCC 0.913198 -250 TCTATTTCCTTTCCCTTTACCTATTCTCTTT 62 511 1 TTCCTTTACC 0.906469 -90 CAAGGGGATTTTCTTTCTACCTTCGGCTTGC 63 424 1 TTCTTCTACC 0.867198 -177 TGCGAGTGCTTTCTTTCCCCCTATAAAGCTG 65 236 0 TTCTTCCCCC 0.903822 -365 GGTTTTTGTTTCCGCTTTACCGTGCGGGAGA 68 150 1 TCCCTTTACC 0.842778 -280 AATTACGTTGTTCTTTTTACCTTTATCCCAT 69 20 0 TTCTTTTACC 0.801956 -346 *** ******* Masking position 6 Map Score: 10.7562 Number of sites scoring better than the average of aligned sites = 296 Number in coding regions = 193 Number in noncoding regions = 103 Number of orfs with sites within 600 bp upstream = 80 Fraction of orfs with sites within 600 bp upstream = 0.0128493 Motif number 11 TTTTGGATAGCGAGAGACAGAGCGATGAGG 3 125 0 CGAGAGACAG 0.855611 -460 GGGTTCACCCGGAGAGGCTGCGCTGCCATT 7 404 0 GGAGAGGCTG 0.959564 -197 AACTTTCTTGGGAGAGGCAGAAGTGTTTAC 16 167 1 GGAGAGGCAG 0.980865 -333 CCCTAGAGCTGGAGAGACACTCTTGGTAAC 17 377 1 GGAGAGACAC 0.926313 -224 TGTGCACGGGGGAGGGACAGTAGCTAACTA 19 375 1 GGAGGGACAG 0.932972 -222 TTGAAGGAGGGGAGGGGCAGGGTTCAATCG 21 489 0 GGAGGGGCAG 0.962794 -112 CGTCCTGCCTGGAGAGACTGAACCCCCATC 27 684 1 GGAGAGACTG 0.927348 -473 AATTCTCAAAGGAGAGGCTGGACAGAGAGG 38 318 1 GGAGAGGCTG 0.959564 -283 ACAACAGAAGCGAGAGACACGTTTCCCGTC 54 353 1 CGAGAGACAC 0.729855 -205 AACACAAATTGGAGAGGCACACAATGTGCA 68 31 0 GGAGAGGCAC 0.958968 -399 AGAGAGAGAGAGAGAGGCAGAGGAAGAGGC 68 309 1 AGAGAGGCAG 0.801546 -121 AGAGTAGAAGGGAGGGACAGGATACGAGTT 71 429 0 GGAGGGACAG 0.932972 -172 CATAATACCCGGAGAGGCTCTTTCCTGCGA 75 190 1 GGAGAGGCTC 0.915394 -411 ********** Masking position 3 Map Score: 7.09915 Number of sites scoring better than the average of aligned sites = 128 Number in coding regions = 92 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 12 ATTGTATGGTTTCCGTCTGGAGAGTGGGCT 1 32 1 TTCCGTCTGG 0.918492 -569 TTCTCTCTGTTTCCCTCTAGCTGAGGGAAA 11 173 0 TTCCCTCTAG 0.895852 -428 AGCCTGGCAGTCCCCTCTAGCCGCTTTTTT 14 325 1 TCCCCTCTAG 0.910417 -276 TTCCGGGATTTTCCCTTCGGTTACCAAGAG 17 396 0 TTCCCTTCGG 0.844316 -205 CCCCGCTAGGTTCCCTTTAGGCCGTCATTT 18 333 1 TTCCCTTTAG 0.828083 -219 GTCTACCATTTTCCCTTTAGGCTTTGCCAT 22 125 1 TTCCCTTTAG 0.828083 -476 GACGGGCTGATCCCGTCTGGCACGCAGAGA 27 643 0 TCCCGTCTGG 0.930138 -514 TGACGGGAGTTCCCGTTTGGCCTGATTGCT 30 33 1 TCCCGTTTGG 0.881732 -568 GGGTGGAGATTTCCCTCCAGGCGGGAACAC 38 418 1 TTCCCTCCAG 0.891271 -183 ACATTTGGTATTCCGTTTGGAATAGGAAGG 40 262 0 TTCCGTTTGG 0.863204 -339 ATAATCGGGTTTCCCTTCAGCGCGCAGTGT 43 391 1 TTCCCTTCAG 0.821116 -210 TATCACTTTTTCCCGTTCAGCAAGAGGTAA 44 563 1 TCCCGTTCAG 0.857416 -38 ATATGGAATATTCCGTCTAGGGAAGAGCCG 51 418 1 TTCCGTCTAG 0.905103 -183 TGGTTATGCGTCCCCTCCGGGCGGCCGCAG 53 248 1 TCCCCTCCGG 0.919631 -353 CTAGCTGCGCTTCCGTTCAGCATCGTTTAC 53 366 1 TTCCGTTCAG 0.835788 -235 GAGACACGTTTCCCGTCTGGGAGGACTCAC 54 366 1 TCCCGTCTGG 0.930138 -192 TTTCCTTGACTCCCGTCCAGTTTAGCACAG 56 72 0 TCCCGTCCAG 0.914812 -529 CATACTCAGCTTCCCTCTAGCAGTACAGTC 71 366 1 TTCCCTCTAG 0.895852 -235 TACCTTTGCCTCCCGTTTGGCAAAATATTC 71 471 1 TCCCGTTTGG 0.881732 -130 ********** Masking position 6 Map Score: 12.5185 Number of sites scoring better than the average of aligned sites = 172 Number in coding regions = 135 Number in noncoding regions = 37 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 13 AGTAAAAAGATTCCCTTCTCACTCTGCTTA 1 85 0 TTCCCTTCTC 0.974352 -516 AAAAAAATTTTTCACTTCTCACTGTGCGTC 4 141 0 TTCACTTCTC 0.90782 -160 ATCATTCACTTTCCCTTCTCAGCAATCTCA 10 36 1 TTCCCTTCTC 0.974352 -565 TCATTATTGTTTCACTTCTCTCTTTGAAAT 10 511 1 TTCACTTCTC 0.90782 -90 ACTGTTTTTATTCCATTTTCATACTAGTAA 14 509 0 TTCCATTTTC 0.668795 -92 CCAGCCATGTTTCCAATCTCATCCTTCCCG 16 387 0 TTCCAATCTC 0.67802 -113 CTGACATATTATCCCTTCTCTTCTGTAATT 19 136 1 ATCCCTTCTC 0.776674 -461 AGCCGTCTCCTTCAATTCTCGGCAAAGCGA 19 282 1 TTCAATTCTC 0.758768 -315 TTCCATTATTTTCCCTTCTCTCTTTTTTTC 22 373 0 TTCCCTTCTC 0.974352 -228 ATCATTTTATTTCTCTTCTCCTTAGGAGGA 38 79 1 TTCTCTTCTC 0.749583 -522 CGCGCAGTGTTTCCATTCTCAGCCCAATTG 43 411 1 TTCCATTCTC 0.923858 -190 ATTGAAACTTTTCCCATCTCAAAATCCAGG 45 457 1 TTCCCATCTC 0.868305 -144 CCATAAAAGCTTCCCTTTTCTCATGTGTCA 58 543 1 TTCCCTTTTC 0.863433 -58 TTAAATAATTTTCACTTTTCCTGTGCGTCG 62 441 0 TTCACTTTTC 0.621068 -160 TCATTAGTTTTTCCATTCTCGATGAGGTGA 71 124 0 TTCCATTCTC 0.923858 -477 ********** Masking position 7 Map Score: 6.72827 Number of sites scoring better than the average of aligned sites = 190 Number in coding regions = 118 Number in noncoding regions = 72 Number of orfs with sites within 600 bp upstream = 65 Fraction of orfs with sites within 600 bp upstream = 0.0104401 Motif number 14 AATATTTGTATTGTTTTATGTAATTATAA 2 5 1 TTTATTTTTT 0.672428 -459 GTGTTTGGGTTTGATATTTTCTTTTTTACCTCTTT 2 261 0 TTTATTTTTT 0.672428 -203 TCTAGTAAGTTTTAACTTATTTTATATGCTGAACT 3 20 1 TTACTTTTTT 0.597904 -565 ATTCATCCAGTTCCACTTTTTTTTTTTTTTTTGGA 3 148 0 TTACTTTTTT 0.597904 -437 GAAATAAAGTTTTTCCTTTTTTTTTTTTTTTTTCT 5 89 0 TTCCTTTTTT 0.702253 -512 CCTTATTAGATTCATCTTATTTTATTTTAGGATTT 10 303 1 TTTCTTTTTT 0.912718 -298 CTCTTTGAAATTTCGCTTGTTTTCTGTTTTCATCT 10 530 1 TTGCTTTTTT 0.702253 -71 GTTTTCTGTTTTCATCTTATATTTTACTTCAATCC 10 548 1 TTTCTTTTTT 0.912718 -53 ATGGAGATGCTTATTCTTGTGTTCTACATTCATGA 12 67 1 TTTCTTTTTT 0.912718 -534 TAATTTTTTATTATTCTTTTTTTCTGCATAGTTCA 13 58 1 TTTCTTTTTT 0.912718 -543 AGTTTCCTATTTCACCTTGTTTTTTCCAATTCTTA 15 155 1 TTCCTTTTTT 0.702253 -401 ACTGTAATGTTTAATCTTCTCTTTTAACTCTGCCT 20 19 1 TTTCTTTTTT 0.912718 -525 TGATCTATTATTTTTCTTTTCTTTTCTTTTGCGGC 21 26 1 TTTCTTTTTT 0.912718 -575 AACAAATTACTTGATCTTCTTTTTTAAAAAAGAAC 24 44 1 TTTCTTTTTT 0.912718 -557 AAATGGGCATTTCTTATTTTATTGTCTACAAGAAT 28 121 0 TTTATTTTTT 0.672428 -480 TATTTTTTTTTTCATCTATTATTGTATTTTGCCCT 29 68 1 TTTCTATTTT 0.664532 -533 ATTTTTCATTTTTTTCTCATTTTCTTATTTATTTT 31 163 1 TTTCTCTTTT 0.528686 -191 TTTTCTTTGGTTATGCTTTTGTTTTAACACGTTGA 33 574 0 TTGCTTTTTT 0.702253 -27 CGATATTGTTTTCTTCTTCTATTATCTTCAATTAT 35 77 1 TTTCTTTTTT 0.912718 -524 AGATGTATGGTTTTTCTATTTTTGTGCTCCGTGTC 35 270 1 TTTCTATTTT 0.664532 -331 GTGTTTTCCTTTCAGCTTTTTTTTTTTTTGAATTT 37 165 1 TTGCTTTTTT 0.702253 -436 TATTTGGCACTTGTTATATTCTTTTGATTCAATTT 37 530 1 TTTATATTTT 0.279986 -71 ACAGTACCAATTTAACTTTTTTTTTTTTTCATTTT 39 251 1 TTACTTTTTT 0.597904 -350 AATTGATTTTTTTTTCTTTTTTTCTTGCGGCTGGT 41 154 1 TTTCTTTTTT 0.912718 -447 TGCCGCTAACTTTATCTTATCTTCTCCATTGTAAT 45 249 1 TTTCTTTTTT 0.912718 -352 CCCTTTTCTTTTTTTCTTTTTTTTTTTTTTTTTTT 45 345 1 TTTCTTTTTT 0.912718 -256 TGTTAAACACTTCCCCTTTTTTTATGCATAGTAAA 46 75 0 TTCCTTTTTT 0.702253 -526 TGTTTCTTAATCTGTTGTTTTGGTGGTTTAT 47 407 0 TTTCTGTTTT 0.378698 -21 CCGTACATTTTTTTTATTTTTTTTTTTGGTTTTTT 48 232 1 TTTATTTTTT 0.672428 -239 TTGCTATTTGTTTCTATTTTCTTTTTTTAAATCGC 50 46 0 TTTATTTTTT 0.672428 -555 TAACTAATCCTTTCTCTTCTTTTTTTTTTTTCTGA 51 350 1 TTTCTTTTTT 0.912718 -251 TTGTCTTCTGTTGTTATAGTCTTCTTAGTATCTTG 51 525 0 TTTATATTTT 0.279986 -76 TGTTATAATTTTGCGCTATTATTATATAACGTTAT 54 86 1 TTGCTATTTT 0.308813 -472 ATGTATGGATTTGTTATATTTTTCTTCAGTTTTTT 54 234 1 TTTATATTTT 0.279986 -324 TCTTTTTTCTTTACTCTTATTTTTTGCACCGATTG 55 86 1 TTTCTTTTTT 0.912718 -267 GAATATGAAATTCTTCTTTTGTTATTTTATAATAT 59 288 0 TTTCTTTTTT 0.912718 -313 TTACTTCGAGTTATACTTTTTTTTTATTTATCTAT 60 271 1 TTACTTTTTT 0.597904 -330 TTTCTTAGTTTTATTCTCTTCTTGTTCTTTTTACT 71 16 0 TTTCTCTTTT 0.528686 -585 TATTCTCTTTTTTTTCTTTTTTTTTTTTCTGGTGG 72 269 1 TTTCTTTTTT 0.912718 -234 GTTTGTTTTTTTTTCCTTCTTTTCTTTCTGGTTTC 75 11 1 TTCCTTTTTT 0.702253 -590 AATAGTAAATTTGTTATTCTCTTTTGAAAATTGAT 75 64 1 TTTATTTTTT 0.672428 -537 TCTTTCTTAGTTCATATTTTATTGTATTTCAACTA 75 516 1 TTTATTTTTT 0.672428 -85 ** **** * ** * Masking position 7 Map Score: 31.2806 Number of sites scoring better than the average of aligned sites = 744 Number in coding regions = 258 Number in noncoding regions = 486 Number of orfs with sites within 600 bp upstream = 402 Fraction of orfs with sites within 600 bp upstream = 0.0645679 Motif number 15 AGCCCGAGCGTGTTTGGGTTTGATATTTTC 2 275 0 TGTTTGGGTT 0.890367 -189 GTGAAAAATATGTCTGGGTTTTAAAACACT 3 198 0 TGTCTGGGTT 0.929129 -387 AAATGCGTAATGTCTGGATGACAAAATGCA 5 184 0 TGTCTGGATG 0.891166 -417 TAGTTATTTTTGTCTTGGTTCTCTTATTCC 6 575 0 TGTCTTGGTT 0.699859 -26 AAAATTCAAATGTTTGGGTGCTGAATCCAT 9 346 0 TGTTTGGGTG 0.966124 -180 TTTTTCAACATGTATGGGTGTTTTTTCTGA 11 320 1 TGTATGGGTG 0.94854 -281 GCACTGTGGATGTTTGGGTTGTGTATTTTG 14 112 1 TGTTTGGGTT 0.890367 -489 GGGTAATATATGTGTGGGTGGAAAATGATT 15 220 0 TGTGTGGGTG 0.929199 -336 ACACCAAATATGTGTGGGTGTCAAACAAAG 17 90 1 TGTGTGGGTG 0.929199 -511 TTTAGTGGTATGTATGGGTGATAAATTTTT 18 240 1 TGTATGGGTG 0.94854 -312 AAACAAAAAATGTTTGGGTTCACAAAAGTG 19 226 0 TGTTTGGGTT 0.890367 -371 TTTCCAGAAATGTTTGGGTTTATTTTTTAA 23 112 1 TGTTTGGGTT 0.890367 -310 TTTATAGATATGTGTGGGTGTTTATATGAT 26 349 0 TGTGTGGGTG 0.929199 -252 GCAGATCTAGTGTCTTGATTATTTCAATAT 26 522 0 TGTCTTGATT 0.293152 -79 CTCAAGTTATTGTCTTGGTGTCTTGCTTAA 27 476 1 TGTCTTGGTG 0.891166 -681 GCATTAAAGGTGTTTGGGTTTAATAGGAGC 28 200 1 TGTTTGGGTT 0.890367 -401 GGCCTAGATATGTTTGGGTGTTTTCTTCAT 31 114 0 TGTTTGGGTG 0.966124 -240 TCGAATTAGTTGTTTTGATGTGATAATAGA 31 333 0 TGTTTTGATG 0.47429 -21 ATTTTCATGATGTATGGGTGTATCGGATGT 34 240 0 TGTATGGGTG 0.94854 -361 TACCGTGTGTTGTTTGGGTGTTTTCCTTTC 37 148 1 TGTTTGGGTG 0.966124 -453 TATAGTGTACTGTCTGGGTTTGTAAAATAA 38 206 0 TGTCTGGGTT 0.929129 -395 AACAAGGCCATGTATGGGTGAGAATGTCCA 40 77 0 TGTATGGGTG 0.94854 -524 TGAGAGGAAGTGTCTGGATTTGATCGTATT 40 394 1 TGTCTGGATT 0.699859 -207 TATTGACTTTTGTCTTGGTGAATCAAAAAA 40 558 1 TGTCTTGGTG 0.891166 -43 TGTTGTAATGTGTTTGGATGATAATAGTCT 42 236 0 TGTTTGGATG 0.835321 -365 GTAAAAATAGTGTATGGGTGTATTTGCGCT 43 190 0 TGTATGGGTG 0.94854 -411 TTTGTGTAGTTGTCTGGGTGCAATCTTTCC 44 358 1 TGTCTGGGTG 0.97874 -243 CTTAATCTGTTGTTTTGGTGGTTTATAATT 47 403 0 TGTTTTGGTG 0.835321 -25 GAGATGTATCTGTCTTGATGCTCCATATGT 55 173 1 TGTCTTGATG 0.592896 -180 GATTTTATAATGTATGGGTGCCAATATGTA 56 179 1 TGTATGGGTG 0.94854 -422 AAACTATAAATGTATGGGTGCGTAATGTAC 56 269 0 TGTATGGGTG 0.94854 -332 TGTTTTAGGATGTCTGGATGTACAAGTTAG 72 212 0 TGTCTGGATG 0.891166 -291 ********** Masking position 5 Map Score: 47.325 Number of sites scoring better than the average of aligned sites = 281 Number in coding regions = 68 Number in noncoding regions = 213 Number of orfs with sites within 600 bp upstream = 126 Fraction of orfs with sites within 600 bp upstream = 0.0202377