AlignACE version 2.2 July 7, 1998 AlignACE -jRPS.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YBL072C 600 bp YBL072C RPS8A 1-603 Ribosomal protein S8A (S14A) (rp19) (YS9) #2 YBR048W 470 bp YBR048W RPS11B 1-45, 557-982 Ribosomal protein S11B (S18B) (rp41B) (YS12) #3 YBR181C 600 bp YBR181C RPS6B 1-6, 359-1063 40S ribosomal gene product S6B (S10B) (rp9) (YS4) #4 YBR189W 400 bp YBR189W RPS9B 1-7, 421-1001 Ribosomal protein S9B (S13) (rp21) (YS11) #5 YCR031C 393 bp YCR031C RPS14A 1-7, 315-721 Ribosomal protein S14A (rp59A) #6 YDL083C 600 bp YDL083C RPS16B 1-24, 457-864 Ribosomal protein S16B (rp61R) #7 YDL061C 600 bp YDL061C RPS29B 1-171 Ribosomal protein S29B (S36B) (YS29) #8 YDR025W 300 bp YDR025W RPS11A 1-45, 385-810 Ribosomal protein S11A (S18A) (rp41A) (YS12) #9 YDR064W 345 bp YDR064W RPS13 1-21, 561-995 Ribosomal protein S13 (S27a) (YS15) #10 YDR447C 511 bp YDR447C RPS17B 1-3, 318-725 Ribosomal protein S17B (rp51B) #11 YDR450W 600 bp YDR450W RPS18A 1-47, 483-876 Ribosomal protein S18A #12 YER074W 600 bp YER074W RPS24A 1-3, 470-874 40S ribosomal protein S24A #13 YER102W 600 bp YER102W RPS8b 1-603 Ribosomal protein S8B (S14B) (rp19) (YS9) #14 YER131W 600 bp YER131W RPS26b 1-360 Ribosomal protein S26B #15 YGL189C 600 bp YGL189C RPS26A 1-360 Ribosomal protein S26A #16 YGL123W 600 bp YGL123W RPS2 1-765 Ribosomal protein S2 (S4) (rp12) (YS5) #17 YGR027C 600 bp YGR027C RPS25A 1-327 Ribosomal protein S25A (S31A) (rp45) (YS23) #18 YGR118W 494 bp YGR118W RPS23A 1-65, 386-758 Ribosomal protein S23A (S28A) (rp37) (YS14) #19 YGR214W 600 bp YGR214W RPS0A 1-90, 546-1214 Ribosomal protein S0A #20 YHL015W 600 bp YHL015W RPS20 1-366 Ribosomal protein S20 #21 YHR021C 555 bp YHR021C RPS27B 1-3, 554-799 40S Ribosomal protein S27B (rp61) (YS20) #22 YHR203C 600 bp YHR203C RPS4B 1-14, 284-1055 Ribosomal protein S4B (YS6) (rp5) (S7B) #23 YIL069C 600 bp YIL069C RPS24B 1-3, 413-817 40S ribosomal protein S24B #24 YJL191W 372 bp YJL191W RPS14B 1-10, 419-825 Ribosomal protein S14B (rp59B) #25 YJL190C 600 bp YJL190C RPS22A 1-393 Ribosomal protein S22A (S24A) (rp50) (YS22) #26 YJL136C 600 bp YJL136C RPS21B 1-24, 485-724 Ribosomal protein S21B (S26B) (YS25) #27 YJR123W 600 bp YJR123W RPS5 1-678 Ribosomal protein S5 (S2) (rp14) (YS8) #28 YJR145C 600 bp YJR145C RPS4A 1-14, 271-1042 Ribosomal protein S4A (YS6) (rp5) (S7A) #29 YKL156W 432 bp YKL156W RPS27A 1-3, 354-599 40S ribosomal protein S27A (rp61) (YS20) #30 YKR057W 354 bp YKR057W RPS21A 1-24, 347-586 Ribosomal protein S21A (S26A) (YS25) #31 YLR048W 600 bp YLR048W RPS0B 1-90, 450-1118 Ribosomal protein S0B #32 YLR167W 600 bp YLR167W RPS31 1-459 Ribosomal protein S31 (S37) (YS24) #33 YLR264W 307 bp YLR264W RPS28B 1-204 Ribosomal protein S28B (S33B) (YS27) #34 YLR287C-A 321 bp YLR287C-A RPS30A 1-3, 434-622 Ribosomal protein S30A #35 YLR333C 600 bp YLR333C RPS25B 1-327 Ribosomal protein S25B (S31B) (rp45) (YS23) #36 YLR367W 598 bp YLR367W RPS22B 1-133, 617-876 Ribosomal protein S22B (S24B) (rp50) (YS22) #37 YLR388W 600 bp YLR388W RPS29A 1-171 Ribosomal protein S29A (S36A) (YS29) #38 YLR441C 406 bp YLR441C RPS1A 1-768 Ribosomal protein S1A (rp10A) #39 YML063W 600 bp YML063W RPS1B 1-768 Ribosomal protein S1B (rp10B) #40 YML026C 577 bp YML026C rps18B 1-47, 449-842 Ribosomal protein S18B #41 YML024W 523 bp YML024W RPS17A 1-3, 402-809 Ribosomal protein S17A (rp51A) #42 YMR143W 600 bp YMR143W RPS16A 1-24, 214-621 Ribosomal protein S16A (rp61R) #43 YMR230W 600 bp YMR230W RPS10B 1-52, 463-728 Ribosomal protein S10B #44 YNL302C 600 bp YNL302C RPS19B 1-20, 572-986 Ribosomal protein S19B (rp55B) (S16aB) (YS16B) #45 YNL178W 600 bp YNL178W RPS3 1-723 Ribosomal protein S3 (rp13) (YS3) #46 YNL096C 596 bp YNL096C RPS7B 1-144, 490-918 Ribosomal protein S7B (rp30) #47 YOL121C 544 bp YOL121C RPS19A 1-20, 411-825 40S ribosomal protein S19A (S16aA) (rp55A) (YS16A) #48 YOL040C 600 bp YOL040C RPS15 1-429 40S ribosomal protein S15 (S21) (rp52) (RIG protein) #49 YOR096W 600 bp YOR096W RPS7A 1-144, 546-974 Ribosomal protein S7A (rp30) #50 YOR167C 300 bp YOR167C RPS28A 1-204 Ribosomal protein S28A (S33A) (YS27) #51 YOR182C 300 bp YOR182C RPS30B 1-3, 415-603 Ribosomal protein S30B #52 YOR293W 515 bp YOR293W RPS10A 1-52, 490-755 Ribosomal protein S10A #53 YOR369C 557 bp YOR369C RPS12 1-432 40S ribosomal protein S12 #54 YPL090C 600 bp YPL090C RPS6A 1-6, 401-1105 Ribosomal protein S6A (S10A) (rp9) (YS4) #55 YPL081W 600 bp YPL081W RPS9A 1-7, 509-1095 Ribosomal protein S9A (S13) (rp21) (YS11) #56 YPR132W 300 bp YPR132W RPS23B 1-65, 431-803 Ribosomal protein S23B (S28B) (rp37) (YS14) Motif number 1 AGCGGGAAACATGTTTGGGTTTAGAATTGTAT 2 181 0 ATGTGGGTTT 0.916949 -290 GAGTTCAAAGATGTATGGATGCAAGAAAAGAG 3 278 0 ATGTGGATGC 0.944642 -323 AATATGAAAAATGTACAGATGTGTAAATGTAC 4 194 0 ATGTAGATGT 0.864737 -207 GAGTAGTAAAATGTACAGATGTTTATTAAGTC 5 126 0 ATGTAGATGT 0.864737 -268 GCCTGCATATATGTAAGGATGTAACAGGAAAT 6 155 1 ATGTGGATGT 0.985054 -446 ATTTTTCAACATGTATGGGTGTTTTTTCTGAA 6 237 0 ATGTGGGTGT 0.985337 -364 TTTTAACCGAATGTATGGATGTTACAGGGAGC 10 190 0 ATGTGGATGT 0.985054 -322 AATACTATAAATGTATGGGTGTAATTTTAACC 10 214 0 ATGTGGGTGT 0.985337 -298 TGGGTGCGTAATGTACGGATGTTTAATGTCTT 11 274 0 ATGTGGATGT 0.985054 -327 TTCAGATAGCATGCATGGGTGCGTAATGTACG 11 289 0 ATGCGGGTGC 0.854806 -312 GGGCTTGTAAATGTGTGGGTGTACAGTCCCGA 12 263 0 ATGTGGGTGT 0.985337 -338 GGTTACACAAATGCACGGATGCATATATAAAA 17 43 0 ATGCGGATGC 0.852386 -558 GGTGTATATAGGGTATGGGTGTACAGTTAATT 18 108 0 GGGTGGGTGT 0.733156 -387 TTTAAAAATAGGGTATGGGTGTATATAGGGTA 18 125 0 GGGTGGGTGT 0.733156 -370 GTTTTTTAATATGTTTGGGTTTTTATCATATT 19 98 0 ATGTGGGTTT 0.916949 -503 TTTTTTCTTTATGTCTGGGTTTTTTAATATGT 19 116 0 ATGTGGGTTT 0.916949 -485 GATGTAGAAAATGTACAGGTGTGAACTTGCAG 20 342 0 ATGTAGGTGT 0.866986 -259 TCTGGGTGAAATGTATGGATGCATAATTGTCT 22 118 0 ATGTGGATGC 0.944642 -483 CGCACACAAAATGTCTGGGTGAAATGTATGGA 22 131 0 ATGTGGGTGA 0.660189 -470 GGAATAAAATATGTACAGATGTAGTTGATCAA 23 119 0 ATGTAGATGT 0.864737 -482 TTTCAGTGTGGTGCAAGGATGTACAATGATGT 24 168 0 GTGCGGATGT 0.868032 -205 TCAAATAGTGAGGTGTGGATGTATAGAGGAAT 25 373 0 AGGTGGATGT 0.901357 -228 GATGTATAAAGTGTACGGGTGTAAACACATTG 26 257 0 GTGTGGGTGT 0.951964 -344 AGTTATGGAGATGTATGGATGTATAAAGTGTA 26 274 0 ATGTGGATGT 0.985054 -327 TAAATAGTGGATGCATGGGTGCTTCCACGCGT 28 206 0 ATGCGGGTGC 0.854806 -395 AAATTACAGAATGTACGGCTGTTTAAAAATAA 28 235 0 ATGTGGCTGT 0.798412 -366 ATATGCTGTTATGTACAGATTTATTTCCAGTG 29 241 0 ATGTAGATTT 0.512289 -192 AATTTTCAAAATGTACGGATTTAAAAGTACAG 30 130 0 ATGTGGATTT 0.915462 -225 TACATTTTATATGTACGGATGTAAAAAGGGAA 31 176 0 ATGTGGATGT 0.985054 -425 ATTGTCATGAATGCATGGGTTTACATTTTATA 31 197 0 ATGCGGGTTT 0.788856 -404 TTTTATACATATGTACGGATGTGATAGTCTGC 34 96 0 ATGTGGATGT 0.985054 -226 AAATATATTAATGTTTGGGTTTCAACGTTTCC 38 160 0 ATGTGGGTTT 0.916949 -247 ATGGTGTATGGTGTATGGATGTACAAAAATGC 39 203 0 GTGTGGATGT 0.951071 -398 ATTCAGTAGTGTGTACGGATTTTACAGTTTCT 40 179 0 GTGTGGATTT 0.761545 -399 TTTCAAAAAAATGTATGGATGTAAAATTCAGT 40 204 0 ATGTGGATGT 0.985054 -374 TACGGATGTAATGCACGGATGTTAAACCGGAA 41 167 0 ATGCGGATGT 0.957087 -357 AAAAAATAGAATGTACGGATGTAATGCACGGA 41 180 0 ATGTGGATGT 0.985054 -344 CACATGCGCGATGTGCGGATGTATTATGTCTT 43 393 0 ATGTGGATGT 0.985054 -208 CACATCGCGCATGTGTGGGTGTATATGCCCTT 43 410 1 ATGTGGGTGT 0.985337 -191 GGTTGCTAAAATGTTCGGATGTAAAGTAGTAT 44 214 0 ATGTGGATGT 0.985054 -387 TATACAGGAAAGGTATGGATGTTACGGAAACA 45 342 0 AGGTGGATGT 0.901357 -259 CAAAACAATAATGTACGGATTTAAAGAGGTAC 46 295 0 ATGTGGATTT 0.915462 -302 AACGTCACATGTGTACGGATGTAGTTGTGTCA 47 271 0 GTGTGGATGT 0.951071 -274 AAGGTTCATTGTGTATGGGTTTGAAATGAATG 49 101 0 GTGTGGGTTT 0.765042 -500 ACCATATCATATGTTTGGGTGTGATAAGGTTC 49 126 0 ATGTGGGTGT 0.985337 -475 GGTCCACAATATGTACGGATGTATGGTCCCAA 51 72 0 ATGTGGATGT 0.985054 -229 CAAACCCAGAATGCTTGGATGTAGGGAAAAAA 52 156 0 ATGCGGATGT 0.957087 -360 ACCATTTAATATGCCAAGATGTACAAACCTCG 53 178 0 ATGCAGATGT 0.68388 -380 AACAAATCAAATGTACGGATGCACAATGGTAA 53 264 0 ATGTGGATGC 0.944642 -294 CACAATGGAAATGTGAAGATGTTGTAAACAAA 53 290 0 ATGTAGATGT 0.864737 -268 gagaactcgaatgtacggatgttttctctgaa 54 144 0 atgtggatgt 0.985054 -457 aatagttgaaatgtatgggttcaatgagaact 54 169 0 atgtgggttc 0.740833 -432 TTTTAGAATGATGCATGGGTGTGCAGCCTTTT 55 357 0 ATGCGGGTGT 0.957876 -244 **** ****** Masking position 10 Map Score: 102.595 Number of sites scoring better than the average of aligned sites = 355 Number in coding regions = 97 Number in noncoding regions = 258 Number of orfs with sites within 600 bp upstream = 160 Fraction of orfs with sites within 600 bp upstream = 0.0256987 Motif number 2 AAAGCGGGAAACATGTTTGGGTTTAGAATTG 2 184 0 AATGTTTGGG 0.821491 -287 TGGAGTTCAAAGATGTATGGATGCAAGAAAA 3 281 0 AATGTATGGA 0.939038 -320 CAAAAAAATAAGATGTATGGAGTTCAAAGAT 3 298 0 AATGTATGGA 0.939038 -303 ACAGATGTGTAAATGTACGGATTAAATCGTC 4 181 0 AATGTACGGA 0.937214 -220 ATGTAACAGGAAATGTATGGGTCACATATTA 6 173 1 AATGTATGGG 0.962972 -428 TTATTTTTCAACATGTATGGGTGTTTTTTCT 6 240 0 AATGTATGGG 0.962972 -361 ATTTTTTTAAAAATGTTTGGGTCTACTTTAT 9 117 0 AATGTTTGGG 0.821491 -229 AATTTTAACCGAATGTATGGATGTTACAGGG 10 193 0 GATGTATGGA 0.918766 -319 AAAATACTATAAATGTATGGGTGTAATTTTA 10 217 0 AATGTATGGG 0.962972 -295 CATGGGTGCGTAATGTACGGATGTTTAATGT 11 277 0 TATGTACGGA 0.825827 -324 TTTTCAGATAGCATGCATGGGTGCGTAATGT 11 292 0 GATGCATGGG 0.896357 -309 GTGGGCTTGTAAATGTGTGGGTGTACAGTCC 12 266 0 AATGTGTGGG 0.766169 -335 GAAAGTTGTAGGATGTGTGGGCTTGTAAATG 12 282 0 GATGTGTGGG 0.706383 -319 CCCATAGAGCGGGTGTATGGGTCTAGCTTAA 16 214 0 GGTGTATGGG 0.87125 -387 TGGGTTACACAAATGCACGGATGCATATATA 17 46 0 AATGCACGGA 0.871148 -555 GGGTTTTTTAATATGTTTGGGTTTTTATCAT 19 101 0 AATGTTTGGG 0.821491 -500 GCATGGGTGAAAATGTATGGGCTAAATACAA 21 120 0 AATGTATGGG 0.962972 -436 TATAATCCAATGGTGCATGGGTGAAAATGTA 21 134 0 TGTGCATGGG 0.570063 -422 TGTCTGGGTGAAATGTATGGATGCATAATTG 22 121 0 AATGTATGGA 0.939038 -480 TTTAAGTATGTGATGTATGGGCGCACAGTAC 25 334 0 TATGTATGGG 0.892016 -267 TGGATGTATAAAGTGTACGGGTGTAAACACA 26 260 0 AGTGTACGGG 0.899306 -341 AAAGTTATGGAGATGTATGGATGTATAAAGT 26 277 0 AATGTATGGA 0.939038 -324 CTTGAGACAAATATGTATGGGTTAAGAATAA 27 149 0 AATGTATGGG 0.962972 -452 AATAAATAGTGGATGCATGGGTGCTTCCACG 28 209 0 GATGCATGGG 0.896357 -392 TTTATTTCCAGTGTGCACGGGTTGAAATAAA 29 223 0 GGTGCACGGG 0.748116 -210 TCAATTTTCAAAATGTACGGATTTAAAAGTA 30 133 0 AATGTACGGA 0.937214 -222 TTTACATTTTATATGTACGGATGTAAAAAGG 31 179 0 AATGTACGGA 0.937214 -422 AAATTGTCATGAATGCATGGGTTTACATTTT 31 200 0 GATGCATGGG 0.896357 -401 CTATGACTCCACATGCATGGGGGAGGGGTAA 32 21 0 AATGCATGGG 0.921746 -580 ATTCCTTACAGGATGCACGGAGGTAAACAGG 32 330 0 GATGCACGGA 0.832329 -271 TTTTTTATACATATGTACGGATGTGATAGTC 34 99 0 AATGTACGGA 0.937214 -223 TAAAATATATTAATGTTTGGGTTTCAACGTT 38 163 0 TATGTTTGGG 0.593786 -244 GTATGGTGTATGGTGTATGGATGTACAAAAA 39 206 0 TGTGTATGGA 0.634232 -395 AAATTCAGTAGTGTGTACGGATTTTACAGTT 40 182 0 GGTGTACGGA 0.795254 -396 AATTTCAAAAAAATGTATGGATGTAAAATTC 40 207 0 AATGTATGGA 0.939038 -371 TGTACGGATGTAATGCACGGATGTTAAACCG 41 170 0 TATGCACGGA 0.682287 -354 ATAAAAAATAGAATGTACGGATGTAATGCAC 41 183 0 GATGTACGGA 0.916388 -341 CGCACATCGCGCATGTGTGGGTGTATATGCC 43 408 1 GATGTGTGGG 0.706383 -193 TGGGTTGCTAAAATGTTCGGATGTAAAGTAG 44 217 0 AATGTTCGGA 0.725381 -384 AGCAAAACAATAATGTACGGATTTAAAGAGG 46 298 0 TATGTACGGA 0.825827 -299 CGAACGTCACATGTGTACGGATGTAGTTGTG 47 274 0 AGTGTACGGA 0.841017 -271 GGTTTTATATAAATGTACGGGTTGAACGAAC 47 300 0 AATGTACGGG 0.961834 -245 ATAAGGTTCATTGTGTATGGGTTTGAAATGA 49 104 0 TGTGTATGGG 0.745384 -497 ATACCATATCATATGTTTGGGTGTGATAAGG 49 129 0 AATGTTTGGG 0.821491 -472 TGGGTCCACAATATGTACGGATGTATGGTCC 51 75 0 AATGTACGGA 0.937214 -226 TGGCACTTCAACGTGTATGGAAGTTGCCTTT 52 124 0 AGTGTATGGA 0.845176 -392 TACAAACCCAGAATGCTTGGATGTAGGGAAA 52 159 0 GATGCTTGGA 0.47547 -357 TAAACAAATCAAATGTACGGATGCACAATGG 53 267 0 AATGTACGGA 0.937214 -291 atgagaactcgaatgtacggatgttttctct 54 147 0 gatgtacgga 0.916388 -454 aaaatagttgaaatgtatgggttcaatgaga 54 172 0 aatgtatggg 0.962972 -429 TTTTTTAGAATGATGCATGGGTGTGCAGCCT 55 360 0 TATGCATGGG 0.789093 -241 * ********* Masking position 4 Map Score: 64.6391 Number of sites scoring better than the average of aligned sites = 292 Number in coding regions = 154 Number in noncoding regions = 138 Number of orfs with sites within 600 bp upstream = 127 Fraction of orfs with sites within 600 bp upstream = 0.0203983 Motif number 3 ATAGATAGTGGAAAAAGTAAACTTAACTAA 1 369 1 GAAAAAGTAA 0.65471 -232 ATTTCAAGATAAGAAAAAAATTCCGCAACT 1 523 1 AAGAAAAAAA 0.7894 -78 AACTGTAGAAAAAAAAGTAAGGAAATAATT 3 236 0 AAAAAAGTAA 0.581472 -365 AAAAAACAGCAAAAAAATAAGATGTATGGA 3 308 0 AAAAAAATAA 0.684813 -293 TTGCATAGACAAGAAAGAAAGCAACAAGAC 4 363 1 AAGAAAGAAA 0.705609 -38 AAAAGAACGCAAAAAAAAAAAGAGTAGTAA 5 149 0 AAAAAAAAAA 0.864848 -245 GCTGAAGGTTAAAAAAAGAACGCAAAAAAA 5 162 0 AAAAAAAGAA 0.805229 -232 AAATATTAATGAGAAAGAAATTGTTAATTC 9 280 0 GAGAAAGAAA 0.765871 -66 TATCACCAAAAAAAAAAAAAAAAGTAAAGA 12 81 0 AAAAAAAAAA 0.864848 -520 TGAAATTTTTGAAAAAAGAACTAGTGAGCA 12 158 0 GAAAAAAGAA 0.84945 -443 TTTGAATTGGGAGAAAGTAATAGTGACAAG 15 286 1 GAGAAAGTAA 0.526218 -315 AAGAATGGCAAAAAAAAAAAGGACATGATT 18 57 0 AAAAAAAAAA 0.864848 -438 CCCAGACATAAAGAAAAAAACTTTGAAAAA 19 129 1 AAGAAAAAAA 0.7894 -472 AAAAAACTTTGAAAAAAAAAGTATTATGCC 19 143 1 GAAAAAAAAA 0.89726 -458 CGATAAAGGGAAAAAAAGAATTATCTGACC 20 157 1 AAAAAAAGAA 0.805229 -444 TTTTAATTTTGAAAAAAAAACTTCGACGCA 20 439 1 GAAAAAAAAA 0.89726 -162 CCTTCCGCGTAAAAAAGAAATATTGACATC 21 85 1 AAAAAAGAAA 0.803607 -471 TTGGATTATAAAGAAAAAAATTTAATAAAA 21 155 1 AAGAAAAAAA 0.7894 -401 ATTTCAGAAGAAAAAAGGAAGGTGTGTTCG 21 198 1 AAAAAAGGAA 0.725546 -358 GACGTTATATGAAAAAGAAACTATTCTAAA 22 542 0 GAAAAAGAAA 0.848126 -59 TCAGTTTCCCGAAAAAGGAATAAAATATGT 23 137 0 GAAAAAGGAA 0.782982 -464 GCTAAAAAATGAAAAAAAAAAAAAGTTAAA 25 301 1 GAAAAAAAAA 0.89726 -300 AAGTGAAAGAGAAAAAAAAAGAAGAGAGAA 26 21 0 GAAAAAAAAA 0.89726 -580 AAAATCTGATAAAAAAATAAAAGAATATCA 26 571 1 AAAAAAATAA 0.684813 -30 AACGCAGGAAGAAAAAGGAAGCAAAATTAC 28 260 0 GAAAAAGGAA 0.782982 -341 ACAGTTCAAGAAAAAAAGAACGCAGGAAGA 28 278 0 AAAAAAAGAA 0.805229 -323 GATGTCACCGAAAAAAATAACGGAAAACGA 28 307 0 AAAAAAATAA 0.684813 -294 TTTTGTTATTGAAAAAGAAAAAGGGTGCAA 31 109 0 GAAAAAGAAA 0.848126 -492 CGCCCGGGCCAAAAAAAAAAGTTTGTACTA 32 386 0 AAAAAAAAAA 0.864848 -215 CTAGCTCTGCGAGAAAAAAAAGATTCGAAC 33 83 0 GAGAAAAAAA 0.836485 -225 GAAAACAGATGAAAAAAAAAAAATTGTCAA 33 160 0 GAAAAAAAAA 0.89726 -148 TTTTCGAACGGAAAAAAGAAAAGCAGTTAG 34 146 0 GAAAAAAGAA 0.84945 -176 TTTTCCGTTCGAAAAAAAAAAATGTCGTGA 34 161 1 GAAAAAAAAA 0.89726 -161 TTCATTAACCGAAAAAAAAAAAAAAATAAA 38 190 0 GAAAAAAAAA 0.89726 -217 CTATTCTATTAAGAAAGGAAGGTGTTCACG 38 329 1 AAGAAAGGAA 0.607616 -78 ACCCAGAAGGGAAAAAATAATATAAATTGG 39 105 0 GAAAAAATAA 0.747811 -496 CAAGAAAAGGAAGAAAAGAACCCAGAAGGG 39 124 0 AAGAAAAGAA 0.707746 -477 GAGCTCCACTGAAAAAAAAAGAGCAGCATG 39 293 1 GAAAAAAAAA 0.89726 -308 GTGAGATCAAGAGAAAAAAAATGAATATGT 42 328 1 GAGAAAAAAA 0.836485 -273 CTAAATCCAAAAAAAAATAAGTGCTCACCA 43 165 0 AAAAAAATAA 0.684813 -436 CTGAAACAAGGAAAAAGGAACAAAGAAGAA 44 13 0 GAAAAAGGAA 0.782982 -588 GTGAAATCAAGAAAAAAAAACAAGAGAATT 45 254 0 GAAAAAAAAA 0.89726 -347 GCCTCATCTCAAGAAAAGAAAATGTTTTTT 45 407 0 AAGAAAAGAA 0.707746 -194 ATAACAAAAAAAAAAAAAAAGTCAATTTTC 46 251 1 AAAAAAAAAA 0.864848 -346 GAGTAACAATAAAAAAGTAAATATGAAATT 47 26 0 AAAAAAGTAA 0.581472 -519 TAAGAAATGTAAAAAAATAAAAGGCCGCCA 47 335 0 AAAAAAATAA 0.684813 -210 ACTAACAAATAAGAAAAAAATGAAATCCAA 48 517 0 AAGAAAAAAA 0.7894 -84 TTGTTTTAATGAGAAAAAAATATCAGGAGT 50 38 0 GAGAAAAAAA 0.836485 -263 CAACGACCAAGAAAAAAAAAATTTATCAAA 50 170 0 GAAAAAAAAA 0.89726 -131 ACATCTGCGCGAAAAAGAAATGGGTCCACA 51 96 0 GAAAAAGAAA 0.848126 -205 CTCTGGAAATAAAAAAGAAAAACCGGTGTA 52 197 0 AAAAAAGAAA 0.803607 -319 AGGTATTCTGAAAAAAATAAAATGATTCCA 53 320 0 AAAAAAATAA 0.684813 -238 AGTAAATGAAAAGAAAAAAAATAATTTTTT 55 386 0 AAGAAAAAAA 0.7894 -215 GAAAAAAAAAAAAAAAAAAACGAAAAGTAA 55 411 0 AAAAAAAAAA 0.864848 -190 AAATCGAACTGAAAAAAAAAAAAAAAAAAA 55 421 0 GAAAAAAAAA 0.89726 -180 TTTATTAATTAAAAAAAGAATACTTAAAAG 55 535 0 AAAAAAAGAA 0.805229 -66 TGGGCCTGGGAAGAAAAAAATTCCCTCGTC 56 25 0 AAGAAAAAAA 0.7894 -276 ********** Masking position 5 Map Score: 56.6204 Number of sites scoring better than the average of aligned sites = 11474 Number in coding regions = 1485 Number in noncoding regions = 9989 Number of orfs with sites within 600 bp upstream = 2106 Fraction of orfs with sites within 600 bp upstream = 0.338259 Motif number 4 TATGGGTGCAGCAAGGAAATATTTCTTCCAGA 2 152 0 GAAGGAAAAT 0.627808 -319 AGAAAAAAAAGTAAGGAAATAATTTATTTTTA 3 228 0 GAAGGAAAAA 0.948669 -373 TATCGAAGTTAAAAGGAAATAAATATAAGCTT 7 457 0 AAAGGAAAAA 0.871693 -144 AATTATCGATGCAAGGAAAAATGGGTCTAGGA 13 448 1 GAAGGAAAAT 0.627808 -153 TCGATCGTGCACCGGGAAATAACGCTAGGCGT 14 94 1 ACGGGAAAAA 0.604112 -507 GGAGCAAAGTGGAAGGAAAGAATTATAAAGAA 14 280 1 GAAGGAAAAA 0.948669 -321 TCTCGGCTCTGGAAGGAAAAAACCTTCGTGGG 15 23 1 GAAGGAAAAA 0.948669 -578 CTTGTTTTCTGAAAGGAAACCAGTTAATCACT 15 342 1 GAAGGAAACA 0.79826 -259 GTATCAAGCAGTAAGGAAGGAAATTGGAAACA 16 460 0 GAAGGAAGAA 0.938022 -141 AGTTAATTTCAGAAGGAAAGAAAATGTATAAG 18 84 0 AAAGGAAAAA 0.871693 -411 CGCGGGCTCTGGAAGGAAGAAATGACGTTTCG 18 201 1 GAAGGAAGAA 0.938022 -294 AACCTAAGACAACAGGAAATAAACAAAG 18 477 1 ACAGGAAAAA 0.763022 -18 AGATTCTCCAGGCAGGAAGGAATTGGGACAGA 19 265 1 GCAGGAAGAA 0.877643 -336 ACCTCCCGATAAAGGGAAAAAAAGAATTATCT 20 151 1 AAGGGAAAAA 0.763022 -450 TTAATCACTCGGAAGGAAACAACGAGTGAGGT 23 226 1 GAAGGAAAAA 0.948669 -375 TATTCAGTTCAGCAGGAAATAAACAAATAAAC 28 140 1 ACAGGAAAAA 0.763022 -461 CGCAGGAAGAAAAAGGAAGCAAAATTACAGAA 28 256 0 AAAGGAAGAA 0.847643 -345 CCCATGTGTTGGAGGGAAGGAATATATTGAAA 36 229 1 GAGGGAAGAA 0.877643 -370 AAAGAACCCAGAAGGGAAAAAATAATATAAAT 39 108 0 GAGGGAAAAA 0.89753 -493 GGTAAACAAGAAAAGGAAGAAAAGAACCCAGA 39 128 0 AAAGGAAGAA 0.847643 -473 GATTGTACACATAAGGAAACAACTGTAAAGAT 42 527 1 AAAGGAAAAA 0.871693 -74 AAAAGCTGACATCAGGAAGAAAATCAATAGTG 44 266 0 ACAGGAAGAA 0.725027 -335 AGTGATTGGTGAAAGGAAAGCATAAGAGAAAT 49 301 0 GAAGGAAACA 0.79826 -300 TAAGAAAGCTGAAAGGAAGAAAGATCATCACG 49 573 1 GAAGGAAGAA 0.938022 -28 ATGCTTGGATGTAGGGAAAAAATTGGCACTTC 52 146 0 GAGGGAAAAA 0.89753 -370 ACCGTTTCCTGAAGGGAAAAAAATACTAAATA 53 27 0 GAGGGAAAAA 0.89753 -531 gcattctgtaggcaggaagccactggacactc 54 299 1 gcaggaagca 0.60563 -302 * ******* ** Masking position 7 Map Score: 23.3508 Number of sites scoring better than the average of aligned sites = 483 Number in coding regions = 254 Number in noncoding regions = 229 Number of orfs with sites within 600 bp upstream = 196 Fraction of orfs with sites within 600 bp upstream = 0.0314809 Motif number 5 GAGAGAATTTCCGCCCAGGTCAAAGGCCACAG 6 360 0 CCGCCAGGCA 0.82 -241 GCAGTTCGTTCCGGCCAGGCCGCGTGAGCCTA 6 426 1 CCGCCAGGCG 0.985747 -175 AAATGTCGCCCCAGCCAGGTCGGACACATCTG 11 461 1 CCACCAGGCG 0.914529 -140 AAGGTTTTTTCCTTCCAGAGCCGAGAACATCT 15 17 0 CCTCCAGACC 0.896647 -584 TTGCACGCAGCTTCCCAGGACGCCTAGCTATT 16 360 1 CTTCCAGGCG 0.958424 -241 GTCATTTCTTCCTTCCAGAGCCCGCGTGCTGA 18 195 0 CCTCCAGACC 0.896647 -300 ATTCCTCCATCCCTCCAGGCAGGATCTGTCCC 19 289 0 CCCCCAGGAG 0.775346 -312 GGGCAGGACACTTGCCAGATCCCGTAGCAAGG 19 476 1 CTTCCAGACC 0.746636 -125 AAAGGAAACTCCCACCAGGACGTGGTGGGAAA 21 329 1 CCCCCAGGCG 0.988023 -227 CTTCGGCGTCCCCGCCAAGGCGTACTGTTTGC 25 199 1 CCCCCAAGCG 0.90685 -402 TCGAAGCGTGCCCACCAGCTCCCGGCGAGAGA 26 343 0 CCCCCAGCCC 0.94358 -258 TCTTTTTCTCCCGCCCAGAACGTAAAGCCTTG 27 276 1 CCGCCAGACG 0.937452 -325 CAGAACAGGACTTGCCAGGGCCAGTCCGAGCC 28 440 0 CTTCCAGGCC 0.931501 -161 TCCATTCCATCTTTCCAGCTCCTCCCGCGTCC 31 403 0 CTTCCAGCCC 0.823764 -198 GCCGGCTGGACTCTCCAGGCCGGAGTGATGAT 39 412 1 CTCCCAGGCG 0.96554 -189 AATTACTTTTCTTACCAGGCCGCC 42 3 0 CTTCCAGGCG 0.958429 -598 CGCGTTTGAGCCCAGCAGGACGGAGCTCTAGT 44 355 1 CCCGCAGGCG 0.836478 -246 GGCGGAACTGCCGCCCAACACGGTTTCCGGGA 48 246 0 CCGCCAACCG 0.737235 -355 GGCGGCAGTTCCGCCCAACACGGGCCTAGACA 48 263 1 CCGCCAACCG 0.737235 -338 GAATTTTTTTCTTCCCAGGCCCACCAACGTGC 56 32 1 CTTCCAGGCC 0.931501 -269 *** ***** ** Masking position 7 Map Score: 12.3719 Number of sites scoring better than the average of aligned sites = 184 Number in coding regions = 143 Number in noncoding regions = 41 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 6 GTTTATTAAGTCCGTACACCGCACGTAAGTACTC 5 104 0 TCCGTACGCC 0.96245 -290 GAATCGCAGTTCCCCTGAGCGCGCGTCTCCGCAA 11 371 0 TCCCCACGCC 0.888649 -230 GGAGGGACAGTCCGCCTAACTTCCTTACGAACGG 13 13 1 TCCGCACTTC 0.927248 -588 CACTTCGAGTTCCGCCTATGTTACTGGATATGAG 15 62 0 TCCGCAGTTC 0.741284 -539 CGGAGCTCCTCCCGAGAAAGGCCCCTTCATCTCT 18 289 1 CCCGAAGGCC 0.671891 -206 AAAGTATTATGCCGCTGAGCGCGCCACGTTAAAA 19 160 1 GCCGCACGCC 0.982083 -441 TGATTGAATAGCCGTCTAGCTCCCTATTGTGACT 20 86 1 GCCGTACTCC 0.850504 -515 CGGGATCCGCCCCGCCCAAGGCTCTCTTCCTCTA 21 274 1 CCCGCAGGCC 0.941809 -282 CCCTCTGCTTCCCGCTGACCTTTCTTGGGCCCAG 21 372 1 CCCGCACTTC 0.894193 -184 CCTTATATCTTCCGCTAAACTCTCTACTAAACAT 30 281 0 TCCGCACTCC 0.979482 -74 CCCTGGAACTTCCGCCTAGCGCACTCAATTTCGC 31 315 0 TCCGCACGCC 0.990874 -286 TTCTGAGGTTTCCGACAACCTCACGACATTTTTT 34 177 0 TCCGAACTCC 0.857956 -145 ACATAATACATCCGCACATCGCGCATGTGTGGGT 43 396 1 TCCGCACGCC 0.990874 -205 TCGCGCGTCTTCCGCATATCGTCCGGTATAGTCT 48 102 1 TCCGCACGTC 0.966653 -499 ACTTTTTTAATCCGTACACCGCGCGTATAAATCA 48 191 1 TCCGTACGCC 0.96245 -410 TCCGGCGAGGCCCGCGAAGCTCGCTTTCTTTCAG 49 337 1 CCCGCACTCC 0.969376 -264 CCTGGGGCCCGCCGTCCAACGTGCGGGTACCGTA 55 50 1 GCCGTACGTC 0.775512 -551 ***** * *** * Masking position 8 Map Score: 11.2242 Number of sites scoring better than the average of aligned sites = 112 Number in coding regions = 69 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 7 CATCTTATTTTTTTGCTGTTTTTTTTCAGTGTCTC 3 314 1 TTTTGTTTTT 0.896024 -287 TTACATGGCATTTACTTTTGACTTTGCCAGTGTTA 6 488 0 TTTTTTCTTT 0.896024 -113 GTTATAATTTTTTCTTTGTCGTTTTTTCTGAGCGC 9 153 1 TTTTGTTTTT 0.896024 -193 AATTACCTTCTTTACTTTTTTTTTTTTTTTTGGTG 12 73 1 TTTTTTTTTT 0.902235 -528 ATTATGTGTATTTATCTTTCTTTTTGAAAGTAAAT 14 203 0 TTTTTTTTTT 0.902235 -398 ATTTACTGAATTTGTATGTAATTTTTAG 14 583 1 TTTTGTTTTT 0.896024 -18 CAAGTATGTTTTTACTTTTTACTTTATCATAGAAC 17 564 1 TTTTTTCTTT 0.896024 -37 TTTTTACATTTTTACTTTTATCTTTTCCCCTTCTA 20 300 0 TTTTTTCTTT 0.896024 -301 ACAGTACCAATTTAACTTTTTTTTTTTTTCATTTT 25 306 0 TTTTTTTTTT 0.902235 -295 TTCTCTCTTCTTTTTTTTTCTCTTTCACTTTTCTA 26 21 1 TTTTTTCTTT 0.896024 -580 CACGTTACCTTTTTAGTGTAATTTTCGTTCATTTC 30 193 0 TTTTGTTTTT 0.896024 -162 AAATCCCAGATTTGGCTTTGATTTTGGCATCGGTT 35 219 0 TTTTTTTTTT 0.902235 -382 CTGCAGGCCATTTTGCTTTTGCTTTGACTTTTTTT 35 463 1 TTTTTTCTTT 0.896024 -138 CTGCTGGTCGTTTGTCTTTCGTTTTAAAATTGCGC 36 121 1 TTTTTTTTTT 0.902235 -478 CATTAATATATTTTATTTTTTTTTTTTTTTCGGTT 38 179 1 TTTTTTTTTT 0.902235 -228 ACGTGGACCTTTTCTGTGTTGCTTTTAGTATAACG 45 85 0 TTTTGTCTTT 0.889467 -516 ATTTCACTTCTTTTCATGTTCCTTTGGAATAATCT 45 277 1 TTTTGTCTTT 0.889467 -324 ACTTTTTTTTTTTTTTTGTTATTTTCTGTGCCTTT 46 238 0 TTTTGTTTTT 0.896024 -359 CTAGAACCGATTTTCGTTTCTCTTTGGAAGGTCTC 48 313 1 TTTTTTCTTT 0.896024 -288 ATTTTTTTTCTTTTCATTTACTTTTCGTTTTTTTT 55 394 1 TTTTTTTTTT 0.902235 -207 TTTTCGTTTTTTTTTTTTTTTTTTTCAGTTCGATT 55 415 1 TTTTTTTTTT 0.902235 -186 GCTGTATTAGTTTTCTTGTGTTTTTATTAATTAAA 55 552 0 TTTTGTTTTT 0.896024 -49 *** *** **** Masking position 7 Map Score: 19.808 Number of sites scoring better than the average of aligned sites = 5055 Number in coding regions = 801 Number in noncoding regions = 4254 Number of orfs with sites within 600 bp upstream = 1226 Fraction of orfs with sites within 600 bp upstream = 0.196916 Motif number 8 GGCGGCTTCAGGTGGACGCGCTTCACTCATG 4 262 1 GGTGGACGCC 0.986263 -139 ACTGTCTACCTGAGGAAGCCCTGCACCATAT 5 270 0 TGAGGAAGCC 0.727697 -124 TCGTCCGCTGGGTGGACGCCCCCACGAGTCA 8 61 1 GGTGGACGCC 0.986259 -240 AATTTCATCTGGAAGACGCGCATTGATTGAT 10 286 1 GGAAGACGCC 0.978094 -226 TTATGACAGTGGAAGAAGCGCAAGAAATGAA 12 315 0 GGAAGAAGCC 0.861183 -286 AGAAAAAGAAGGAAGTCGCCCATCGTATGCA 15 408 1 GGAAGTCGCC 0.862658 -193 ACTCAAATATTGAGGACGCGCGATTACCAGC 25 408 1 TGAGGACGCC 0.950578 -193 GCCGGGAGCTGGTGGGCACGCTTCGAGCGAG 26 349 1 GGTGGGCACC 0.792904 -252 AGCCGAGCTAGGAGGACACCCCGACGGATAA 40 272 0 GGAGGACACC 0.950574 -306 GACGATATGCGGAAGACGCGCGAAACGTGAA 48 94 0 GGAAGACGCC 0.978094 -507 ATCGGTTCTAGGAGGACGCTCCCTCTAAGTG 48 293 0 GGAGGACGCC 0.992828 -308 AAAACATAGCGGTGGGCGCACGTTGGTGGGC 56 50 0 GGTGGGCGCC 0.964981 -251 ********* * Masking position 9 Map Score: 7.73777 Number of sites scoring better than the average of aligned sites = 53 Number in coding regions = 38 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 9 TCTAGTATGGAAACTTTCAATTTCAGAAAG 4 135 1 AAACTTTCAA 0.712272 -266 CATTCGTATCAAAATTTCACCGCTACTTTG 9 189 0 AAAATTTCAC 0.758416 -157 TCTTTTTTCAAAAATTTCATCTTTATAGGT 12 169 1 AAAATTTCAT 0.908566 -432 AATACTATCTGAAATTTCATGCAAACTGCG 14 56 0 GAAATTTCAT 0.854654 -545 TTGTACCGAGAAAATTTCAAATGTTACGTA 15 461 1 AAAATTTCAA 0.847186 -140 GAATATGGAAAAAATTTCAAACTTTTTAAT 24 201 1 AAAATTTCAA 0.847186 -172 AATGTTTATAAAACTTTCAATCCTATAATC 26 505 0 AAACTTTCAA 0.712272 -96 ATCAATACTTAAAATTTCATTTTGAATTAA 27 506 1 AAAATTTCAT 0.908566 -95 GACAATCTCTGAAATTTCAATACTACCACA 28 472 0 GAAATTTCAA 0.766388 -129 CGATTTTTTGAAAATTTCATATACGTTATT 30 248 1 AAAATTTCAT 0.908566 -107 ACATTTTTTTGAAATTTCATGTTTTTTTGA 40 222 1 GAAATTTCAT 0.854654 -356 ATCCCACTTTAAAATTTCATTAGTCCATTT 44 535 0 AAAATTTCAT 0.908566 -66 AACTGAAATGAAAATTTCATATTTACTTTT 47 14 1 AAAATTTCAT 0.908566 -531 CCATAGTTGAAAACTTTCATAATAAATTCT 47 197 1 AAACTTTCAT 0.816078 -348 CTCACATTGAAAAATTTCACGGCGTTCTGC 47 376 0 AAAATTTCAC 0.758416 -169 CTATTAGACTGAAATTTCATTTTCTTTATT 50 210 0 GAAATTTCAT 0.854654 -91 ACCCGCAAGCAAACTTTCAAGCAAACTTAC 53 351 1 AAACTTTCAA 0.712272 -207 TACAATTTGCAAAATTTCATCGAATTCTCC 53 378 1 AAAATTTCAT 0.908566 -180 cagtttctttgaaatttcatatacagtgtt 54 490 1 gaaatttcat 0.854654 -111 ********** Masking position 5 Map Score: 11.7132 Number of sites scoring better than the average of aligned sites = 562 Number in coding regions = 357 Number in noncoding regions = 205 Number of orfs with sites within 600 bp upstream = 184 Fraction of orfs with sites within 600 bp upstream = 0.0295535 Motif number 10 AAACGCCGAGTTTTTCACAAGAAGAGATGAAAAGA 1 477 1 TTTTTCAAAA 0.935831 -124 GTATGGGTGTTTTTTCTGAATATCAGACTCTTTTA 6 222 0 TTTTTCAAAA 0.935837 -379 TATCCAAAACTTTTTTAAAATAGCATCCACATCAC 11 179 1 TTTTTTAAAA 0.849214 -422 CGTCGAAGTTTTTTTTTCAAAATTAAAACATTATC 20 432 0 TTTTTTAAAA 0.847847 -169 GCCTGGAAATTTTTTCGGAAGAGAAAGTTTCGAAT 23 176 0 TTTTTCAAAA 0.935835 -425 AGTTCTAGTATTTTTTATAAAACAAGACCAACATA 25 566 1 TTTTTTAAAA 0.848104 -35 GAAAAGAGATTTTTTCTTAATAGTAACCATTTTCC 29 44 0 TTTTTCAAAA 0.935834 -389 AACACAGAAATTTTTTCAAAAACAAAATATGCTGT 29 264 0 TTTTTTAAAA 0.848104 -169 GCACCCTTTTTCTTTTTCAATAACAAAAAAGAGCT 31 111 1 TCTTTTAAAA 0.688847 -490 GATGAATGAATCTTTCAGAAAAAAAAGTCAAAGCA 35 482 0 TCTTTCAAAA 0.851065 -119 TCACCATAGTTCTTTCGTAACAGAATAAACTGAAC 36 376 0 TCTTTCAAAA 0.852075 -223 ACCCACTATTTTTTTCAGAAGATCAGATGCGAGAG 36 521 1 TTTTTCAAAA 0.935838 -78 CCTTTTTTGCTTTTTCATAAAATAATTTCTCTAGA 39 158 1 TTTTTCAAAA 0.93582 -443 CCTTTTCCAATTTTTCAAAAAAACATGAAATTTCA 40 231 0 TTTTTCAAAA 0.935818 -347 GAACTCCCAGTTTTTTGGAAAATAAAAAATAGAAT 41 200 0 TTTTTTAAAA 0.848104 -324 GAAGCCTGAGTTTTTCAAAACAATATAGGAATTAA 43 484 1 TTTTTCAAAA 0.935837 -117 CTTTTCCCATTTTTTTTCAATACTACTTTACATCC 44 195 1 TTTTTTAAAA 0.849198 -406 AGAAAATGTTTTTTTCATAAAAAAAACAAACTTTA 45 386 0 TTTTTCAAAA 0.934725 -215 TCGTTTTCGATTCTTCTCAAAAGCAGAAAACCAAG 50 267 1 TTCTTCAAAA 0.729453 -34 TAACGCACGCTCTTTTGCAAAAATATCCATTAATT 52 384 1 TCTTTTAAAA 0.688847 -132 TTTTCTTCTCAATAATATATAGTCTAG 53 541 0 TTCTTCAAAA 0.729635 -17 ****** ** * * Masking position 5 Map Score: 14.9705 Number of sites scoring better than the average of aligned sites = 249 Number in coding regions = 152 Number in noncoding regions = 97 Number of orfs with sites within 600 bp upstream = 86 Fraction of orfs with sites within 600 bp upstream = 0.013813 Motif number 11 ATTCCGCAACTTTTGTACGTTCTTTATTTTACTAACAAGC 1 542 1 TTTTCTTTTT 0.75227 -59 GTATTATAATTTTTGCAGTTTTTATGTTTTCCAGGAGTTC 7 518 0 TTTTTTTTTT 0.900758 -83 TTTATCTGCTTTTTTCTTTATCTATTTATTCTTCTCTAGG 10 481 0 TTTTCTTATT 0.696226 -31 GAAATTACCTTCTTTACTTTTTTTTTTTTTTTTGGTGATA 12 71 1 TTTTTTTTTT 0.900758 -530 TTTTACACTATTTTAATTTTTGTTAATTTG 13 581 0 TTTTTTTTTT 0.900758 -20 TCCTTTGTTTTATTCAGTATTTTCGATATTTCCTCTTTAC 14 535 1 TTTTTTTATT 0.872618 -66 TCTATGGGATTATTTACTTGTTTGAATTTTAAGATTTGTG 16 237 1 TTTTTTTTTT 0.900758 -364 ATGTTTGGGTTTTTATCATATTTCAATTTTAACCGGACTT 19 80 0 TTTTTTTTTT 0.900758 -521 TAATACTTTTTTTTTCAAAGTTTTTTTCTTTATGTCTGGG 19 129 0 TTTTTTTCTT 0.665376 -472 CCCGGCAGATTTTTATTAAATTTTTTTCTTTATAATCCAA 21 155 0 TTTTTTTCTT 0.665376 -401 CGACTATATCTTTTATTCCGTTTTGTTTTTCAAGTCTATC 24 235 0 TTTTTTTTTT 0.900758 -138 CCAATTTAACTTTTTTTTTTTTTCATTTTTTAGCTTGATT 25 295 0 TTTTTTTTTT 0.900758 -306 CTCTCTTCTTTTTTTTTCTCTTTCACTTTTCTACATATGT 26 23 1 TTTTTTTTTT 0.900758 -578 GTACTGCATTTTTTCGATGTTTTCAATATTCAGTTCAGCA 28 114 1 TTTTTTTATT 0.872618 -487 AAAACCAGGATATTTTAATGTTTGTTTATTTGTTTATTTC 28 155 0 TTTTTTTATT 0.872618 -446 GGGCATTACGTTTTCAACACTTTTAATATTTCCCTTTTTA 31 147 1 TTTTTTTATT 0.872618 -454 TCTTATCTCTTCTTGTGCTATTTCGGTATTCTAAATTACA 31 553 0 TTTTTTTATT 0.872618 -48 CTTTTAGACTTATTAAATGGTTTAAATATTTTGAGATGTT 32 461 1 TTTTTTTATT 0.872618 -140 TACCAAGTAATCTTGTGACTTCTTTGTATTGGAATAAAAG 32 530 0 TTTTCTTATT 0.696226 -71 ATCACGCAACTTTTGACAATTTTTTTTTTTTCATCTGTTT 33 148 1 TTTTTTTTTT 0.900758 -160 TTTTGCTGCTCTTTTATGCTTTGCTTATTTTTTATTAAT 33 279 0 TTTTTTTATT 0.872618 -29 CGTAAGGCTGTTTTGTTCTATCTATTTTTTCTGAGGTTTC 34 199 0 TTTTCTTTTT 0.75227 -123 AACATTAATATATTTTATTTTTTTTTTTTTTTCGGTTAAT 38 177 1 TTTTTTTTTT 0.900758 -230 TTCCTTTTCTTGTTTACCTTTTTTGCTTTTTCATAAAATA 39 142 1 TTTTTTTTTT 0.900758 -459 CCCATCCAGTTATTATTCCATCTACATATTTAAAAAATAA 40 49 1 TTTTCTTATT 0.696226 -529 AAAATTGACTTTTTTTTTTTTTTTGTTATTTTCTGTGCCT 46 240 0 TTTTTTTATT 0.872618 -357 TACATTATTGTTTTGCTTAATTTCAATATTTCGGAAAAAG 46 312 1 TTTTTTTATT 0.872618 -285 TTCTTTTATTTGTTCTTGGATTTCATTTTTTTCTTATTTG 48 502 1 TTTTTTTTTT 0.900758 -99 CCACGCACTTTTTTGATAAATTTTTTTTTTCTTGGTCGTT 50 159 1 TTTTTTTTTT 0.900758 -142 TTTCATTTACTTTTCGTTTTTTTTTTTTTTTTTTTCAGTT 55 405 1 TTTTTTTTTT 0.900758 -196 * ** *** **** Masking position 11 Map Score: 30.9438 Number of sites scoring better than the average of aligned sites = 3995 Number in coding regions = 835 Number in noncoding regions = 3160 Number of orfs with sites within 600 bp upstream = 1187 Fraction of orfs with sites within 600 bp upstream = 0.190652 Motif number 12 GCCAACCTTTCAGCGGGCAAGTCCAATAGCTT 2 313 1 CAGCGGGCAT 0.958923 -158 GGTCTGCCGCAAGCAGACAAATTTGCCAAAAT 5 216 0 AAGCAGACAT 0.777154 -178 CCTTACATATATGCAGGCAATTTTTTGTAGTT 6 141 0 ATGCAGGCAT 0.59731 -460 AATGAAGGAACAGCAGGAAAGTATCTGCGCTG 7 234 1 CAGCAGGAAT 0.846363 -367 GGCGTCCACCCAGCGGACGACTTACTTGGGTT 8 49 0 CAGCGGACAT 0.898579 -252 ATTTTAGGAACAGCAGGCCATTATATCCAAAA 11 156 1 CAGCAGGCAT 0.98221 -445 ATCTGCCCGGCAGCAGGCCACTGTACTACTCA 19 437 0 CAGCAGGCAT 0.98221 -164 ATAGTGTTAGCAGCAGACAAGACAAGAAGGAT 20 220 0 CAGCAGACAA 0.88005 -381 GACATCCAAAGAGCAGGCCAATCACTAGAGAA 23 457 0 GAGCAGGCAT 0.843504 -144 GGAACCATACCAGCTGGCTAGTGGGTCCGTTT 26 429 1 CAGCTGGCAT 0.854558 -172 ATATTCAGTTCAGCAGGAAATAAACAAATAAA 28 139 1 CAGCAGGAAA 0.65856 -462 ACAGTTTAGTCTGCAGGCCATTTTGCTTTTGC 35 453 1 CTGCAGGCAT 0.89912 -148 AAACGACCAGCAGCAGACAAAAAGTACAAATT 36 102 0 CAGCAGACAA 0.88005 -497 CAGTTTAGCACAGCGGACGATTGGCAGTTTGC 42 62 1 CAGCGGACAT 0.898579 -539 TCGAAACAAACAGCAGGCGAAACACTTCATCC 43 38 0 CAGCAGGCAA 0.950815 -563 AGGAAGGGCCAAGCAGACGATTACGGTGTTGT 48 407 0 AAGCAGACAT 0.777154 -194 ******** * * Masking position 10 Map Score: 5.89718 Number of sites scoring better than the average of aligned sites = 187 Number in coding regions = 149 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 13 ACGTATCAAGCCAGGGAAAAAG 2 459 1 CCGGAAAAAG 0.954496 -12 AAAGTAAATGCCATGTAAAATGTATAGGTTAC 6 505 1 CCTGAAAATG 0.904177 -96 ACGAACAGCGCGGTGGAAAATGTTACATTTTG 7 50 1 CGTGAAAATG 0.766103 -551 TGACGCTTTCCCAGGCAAAATGTAACATTTTC 7 65 0 CCGGAAAATG 0.970438 -536 ATTATCGATGCAAGGAAAAATGGGTCTAGGAT 13 449 1 CAGGAAAATG 0.741469 -152 TTAAAATGATCGTGGCAAAAAGGGAAGGAGAT 15 494 0 CGGGAAAAAG 0.879244 -107 AGGAGATGCGCCCTGCAAAAAGCGCAATAACG 22 163 0 CCTGAAAAAG 0.857742 -438 CGCGGCAGGCCGAGGCAAACAGTACGCCTTGG 25 213 0 CGGGAAACAG 0.697 -388 ATCCAAGTTTCCTGGAAAACAGATGAAAAAAA 33 172 0 CCGGAAACAG 0.868887 -136 ATTCCTCAGTCCTGGTAAAATGTACAATCCTG 37 339 0 CCGGAAAATG 0.970438 -262 AAGCGAGCGCCCTGGTAAAATGTGGTTCAAGC 46 349 1 CCGGAAAATG 0.970438 -248 CTTTGGAGTTCCATGCAAAATGTTTCACGTTT 48 71 1 CCTGAAAATG 0.904178 -530 GCGTTAGAATCCTGGTAAAATGTCTAATCTTA 49 473 1 CCGGAAAATG 0.970438 -128 ** ** ****** Masking position 7 Map Score: 6.40516 Number of sites scoring better than the average of aligned sites = 124 Number in coding regions = 88 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159 Motif number 14 CTACAAACCAAGCCAGCCGAGATTGTATCAG 3 444 0 AGCCGCCGAG 0.981016 -157 CATGGGAGACACCCAGCGGAGCTCCTCCCGA 18 273 1 ACCCGCGGAG 0.911936 -222 TGTTTGCCTCGGCCTGCCGCGTGGTGGTGGT 25 224 1 GGCCGCCGCG 0.980097 -377 ACCTCCACTAAGCCTGCGGCGAAGGTAGGGG 27 373 0 AGCCGCGGCG 0.986464 -228 TGGAGAGTCCAGCCGGCCGAGGCGGCTTCAC 39 398 0 AGCCGCCGAG 0.981015 -203 CGGAACAAGAGGCCTGCGGAGACGAGTTCTT 40 372 0 GGCCGCGGAG 0.990358 -206 GCCCACAGCAAGCCGGCTGAGCCCAGGCGCT 41 343 0 AGCCGCTGAG 0.908274 -181 ATGGGAGAAAGGCTCGCGGCGCCTCATCTCA 45 426 0 GGCTGCGGCG 0.85842 -175 GTCTCCAGCTAGCCGGGGGAGTACATTCGGC 49 254 0 AGCCGGGGAG 0.904069 -347 GTTCCGGCGAGGCCCGCGAAGCTCGCTTTCT 49 335 1 GGCCGCGAAG 0.88053 -266 TGGTCACTCTAGACGGCCGCGTCTGTACAAA 50 131 0 AGACGCCGCG 0.7531 -170 TTTATAATATGTCCTGCGGAGAATTCGATGA 53 394 0 GTCCGCGGAG 0.890031 -164 **** ****** Masking position 6 Map Score: 4.06783 Number of sites scoring better than the average of aligned sites = 90 Number in coding regions = 61 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159 Motif number 15 TTCTTTTCATCTCTTCTTGTGAAAAACTCGG 1 482 0 CTTTCTTGTG 0.911356 -119 GTACATTTTACTACTCTTTTTTTTTTTGCGT 5 142 1 CTCTCTTTTT 0.83205 -252 TTCAGAAGGTCTGCTCTTGTGGCTGGTTCAT 18 245 1 CTCTCTTGTG 0.917715 -250 CTTTTTGCTTCTATTCTTGTGAAGCGCATCC 19 52 0 CTTTCTTGTG 0.911356 -549 CTTAAGTTCTCTCTTCTTTTTTTTTCTCTTT 26 15 1 CTTTCTTTTT 0.820367 -586 CTTATCTTATCTCTTCTTGTGCTATTTCGGT 31 566 0 CTTTCTTGTG 0.911356 -35 TTTTGCTGCTCTTTTATGCTTTGCTT 33 292 0 CTCTCTTTTA 0.83205 -16 ATACTAACTGCTTTTCTTTTTTCCGTTCGAA 34 143 1 CTTTCTTTTT 0.820367 -179 TCTTTTCTTCCTTTTCTTGTTTACCTTTTTT 39 135 1 CTTTCTTGTT 0.865718 -466 GACATCCATGCTGCTCTTTTTTTTTCAGTGG 39 298 0 CTCTCTTTTT 0.83205 -303 TCTTGGGATTCTTCTCTTGTATACTTTACTA 42 226 0 CTCTCTTGTA 0.874901 -375 ATGGTATGGTCTCTTCTTTTATTTGTTCTTG 48 489 1 CTTTCTTTTA 0.820367 -112 CTTATTATGGCTTTTCTTTTGGGACCATACA 51 54 1 CTTTCTTTTG 0.879269 -247 AGATAGAAATCTTCTCTTTTAAGTATTCTTT 55 520 1 CTCTCTTTTA 0.83205 -81 CTTTTCTTGTAGTTTGTTGTT 56 290 0 CTTTCTTGTA 0.865718 -11 ** ******** Masking position 5 Map Score: 4.69172 Number of sites scoring better than the average of aligned sites = 695 Number in coding regions = 482 Number in noncoding regions = 213 Number of orfs with sites within 600 bp upstream = 211 Fraction of orfs with sites within 600 bp upstream = 0.0338901