AlignACE version 2.2 July 7, 1998 AlignACE -jSAP.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YER047C 478 bp YER047C SAP1 1-2694 member of the AAA ATPase family of proteins #2 YFR040W 600 bp YFR040W SAP155 1-2718 155 kDa SIT4 protein phosphatase-associated protein #3 YGL229C 600 bp YGL229C SAP4 1-2457 SAP4 is related to SAP155, SAP185, and SAP190, all of which associate with the SIT4 protein phosphatase #4 YJL098W 427 bp YJL098W SAP185 1-3177 SIT4 associated protein, MW of 185 kDa #5 YKR028W 595 bp YKR028W SAP190 1-3297 Type 2A-related protein phosphatase #6 YMR159C 300 bp YMR159C SAP18 1-453 Protein homologous to human Sin3 complex component SAP18, possible coiled-coil protein Motif number 1 CAATCAATTACAAAGCGAAGAAAAAAAACCCTATG 1 57 1 CAAAAAAAAA 0.975419 -422 AAATTGAAATCAAGAATAATAAAAATTCTTGATTC 1 239 1 CAAAAAAAAA 0.975419 -240 TGTAAAAAGACTATATTAAAAAAAGAACTGCAGCC 1 370 0 CTAAAAAAAG 0.885375 -109 CGCACGAGTGAAAGGGAAAGAAAAATTGCGTTTGT 1 418 0 AAAAAAAAAA 0.940787 -61 CGCTCCAAAGCAACTAGAAGAAAGGCCTTATTTGA 2 14 1 CAAAAAAAGG 0.961829 -587 AATAAAATCAAAATAATAAAAAAAGAGGAGGAAAA 2 136 0 AAAAAAAAAG 0.97739 -465 GAAATAAAATCAAAATGAAATAAAATCAAAATAAT 2 154 0 CAAAATAAAA 0.889542 -447 CAGTTTTTACAAAAGAAAAGAAAAAAAAGACGAAA 2 265 1 AAAAAAAAAA 0.940787 -336 AAGAAAGGATCAACTTGAAGAACAGCCTTAAAGTA 3 72 0 CAAAAAACAG 0.919671 -529 GAACAATTTTCAAAAGTAAGAAATGTCCTATACGT 3 184 0 CAAAAAAATG 0.942164 -417 CGATAAAGCTAAAATAAAATAAAAAT 3 585 1 AAAAAAAAAA 0.940787 -16 CAAAATGTAAAAAAAAAAATAAAAGGTATACGGTT 4 74 0 AAAAAAAAAG 0.97739 -354 CACTATTCTTAAACACTAACTAAAACGAATTTTTC 4 364 0 AAAAATAAAA 0.763281 -64 GAAGACATATCAAAGATAAGAAAGGTGTTGGATAT 5 231 1 CAAAAAAAGG 0.961829 -365 CCCGTCAAAAAAAAAGAAATAAAAGGTGAAATTAC 5 274 0 AAAAAAAAAG 0.97739 -322 TCTTATAATACAAATAGAAAAAATGACAATTAACC 5 411 0 CAAAAAAATG 0.942164 -185 AGTAAATGAACAAACAAAACAAAAGATGATAAAGA 5 488 0 CAAAAAAAAG 0.990823 -108 AGTAAATGAAGAAATGAAATAAAAGAAGAGGATAA 5 547 0 GAAAAAAAAG 0.919883 -49 TAACAAAAATCAACGTTAAATAAAGGTCAACTACA 6 239 0 CAAAATAAAG 0.956353 -62 *** ** ***** Masking position 8 Map Score: 26.8292 Number of sites scoring better than the average of aligned sites = 2838 Number in coding regions = 1132 Number in noncoding regions = 1706 Number of orfs with sites within 600 bp upstream = 1113 Fraction of orfs with sites within 600 bp upstream = 0.178766 Motif number 2 AAAGGCCTTATTTGACCATTGGATTCAGTAT 2 34 1 TTTGCCATTG 0.893635 -567 TTTGAGTGACTATCCCCTTTTTTCCTCCTCT 2 117 1 TATCCCTTTT 0.884444 -484 GGCTTGTTGTTTTCGTCTTTTTTTTCTTTTC 2 279 0 TTTCTCTTTT 0.94037 -322 AAGATGTCGTTTTGGCCATTTGGACAGAATC 2 316 1 TTTGCCATTT 0.979976 -285 CAAATACCAGGTTGTCCTTTTCCCGCTGGGT 3 466 0 GTTGCCTTTT 0.959222 -135 TTATAGACAATCTGGTCTTTTGTTATTAAGT 3 510 1 TCTGTCTTTT 0.880908 -91 CGTTTATCGTTTTGCCCATTTAATAATTAGG 4 400 1 TTTGCCATTT 0.979976 -28 TCGCCGTAAATTTGTCCATTAAGAATACAGA 5 60 0 TTTGCCATTA 0.934739 -536 TTATTTTTACGCTGGTCATTTTTTACTCTGT 5 146 0 GCTGTCATTT 0.733412 -450 ACTATTGTAATTTCACCTTTTATTTCTTTTT 5 268 1 TTTCCCTTTT 0.974008 -328 ATTGAAGTATTTTCACCTTTAGCATTTTCTT 5 461 1 TTTCCCTTTA 0.916438 -135 GCATTTTCTTTATCATCTTTTGTTTTGTTTG 5 482 1 TATCTCTTTT 0.763087 -114 TTTTGTTTTGTTTGTTCATTTACTTTAGCGT 5 499 1 TTTGTCATTT 0.953694 -97 TTTTATTTCATTTCTTCATTTACTTAACTGC 5 558 1 TTTCTCATTT 0.932761 -38 TCTGTTTGTAGTTGACCTTTATTTAACGTTG 6 233 1 GTTGCCTTTA 0.873166 -68 **** ****** Masking position 3 Map Score: 12.1405 Number of sites scoring better than the average of aligned sites = 1769 Number in coding regions = 1248 Number in noncoding regions = 521 Number of orfs with sites within 600 bp upstream = 441 Fraction of orfs with sites within 600 bp upstream = 0.070832 Motif number 3 AACACAACACAGCACAACACGCTTACCAAA 3 376 0 AGCACAACAC 0.990911 -225 AACACAACACAACACAACACAGCACAACAC 3 386 0 AACACAACAC 0.991495 -215 AACACAACACAACACAACACAACACAACAC 3 396 0 AACACAACAC 0.991495 -205 CAATTAGTAGAACACAACACAACACAACAC 3 406 0 AACACAACAC 0.991495 -195 AGAACTTAATAACAAAAGACCAGATTGTCT 3 514 0 AACAAAAGAC 0.94345 -87 GAACAAACAAAACAAAAGATGATAAAGAAA 5 486 0 AACAAAAGAT 0.845388 -110 GCCGACGATGAGCCAAACACGG 6 3 0 AGCCAAACAC 0.882953 -298 CGTCCACGACAACAAAACAGATGGAAACCC 6 48 0 AACAAAACAG 0.938096 -253 TGCAGCATCAAACACAAGAGCAGCAGCAGA 6 110 0 AACACAAGAG 0.941403 -191 CTGTTTCTGCTGCACAACATCCATTATAAT 6 150 1 TGCACAACAT 0.819504 -151 GTAGCAATTTAGCACAACATATAAAACGCT 6 180 0 AGCACAACAT 0.972777 -121 ********** Masking position 6 Map Score: 12.7046 Number of sites scoring better than the average of aligned sites = 434 Number in coding regions = 304 Number in noncoding regions = 130 Number of orfs with sites within 600 bp upstream = 120 Fraction of orfs with sites within 600 bp upstream = 0.019274 Motif number 4 CTTGGGGAGCCGGTTGCTGTTGCTTCAGCCTCTT 1 282 0 CGTTCGTTGT 0.929245 -197 GTGACTATCCCCTTTTTTCCTCCTCTTTTTTTAT 2 122 1 CCTTTCCTCT 0.957552 -479 TTGGGTTAATCCTTTCCAGTTCGTGTAGCACATG 2 388 0 CCTTCGTTCT 0.98897 -213 GTTGGTAAAGCCATTCCCGCTATTTTCAACAACG 2 424 1 CCTTCGCTAT 0.978838 -177 TCCCACGTGCCGTTTTCACTTCATCACCATGACT 2 508 0 CGTTCCTTCT 0.977334 -93 CTTTCTCATACCGTTCTTGCTGATCATCCTTCTC 2 560 0 CCTTTGCTGT 0.872953 -41 GCTCCGTTCCTCTTCCTCTTTCTCATA 2 584 0 CCTTCCTTCT 0.992014 -17 AACAGAATGCCCATTACGCTTACTTTAAGGCTGT 3 52 1 CCTTCCTTAT 0.987325 -549 GGTGAAGCAACCGTTTCACTTATTCGCACAATCC 3 435 0 CCTTCCTTAT 0.987325 -166 TATACGGTTACCCTTACCCTCAGTCCATCCAACC 4 49 0 CCTTCCTCAT 0.93042 -379 TATACTAGACCCTTTTCAGCTCTTTCCTTGTCCA 5 194 1 CCTTCGCTCT 0.986625 -402 TACACTTGCTCGCTTTTACTTATTCTGTTTGTAG 6 210 1 CGTTTCTTAT 0.856502 -91 ** ** * **** * Masking position 5 Map Score: 11.1264 Number of sites scoring better than the average of aligned sites = 567 Number in coding regions = 403 Number in noncoding regions = 164 Number of orfs with sites within 600 bp upstream = 152 Fraction of orfs with sites within 600 bp upstream = 0.0244137 Motif number 5 TACAAAGCGAAGAAAAAAAACCCTATGTAT 1 65 1 AGAAAAAAAA 0.950115 -414 TGATATGTCTAGAATACATAGGGTTTTTTT 1 78 0 AGAATACATA 0.800047 -401 ATTGAAATCAAGAATAATAAAAATTCTTGA 1 241 1 AGAATAATAA 0.817656 -238 CGCTACTTGGAGAAAAAATACTGAATCCAA 2 52 0 AGAAAAAATA 0.841128 -549 TAAAATCAAAATAATAAAAAAAGAGGAGGA 2 139 0 ATAATAAAAA 0.750054 -462 ACAAAAGAAAAGAAAAAAAAGACGAAAACA 2 273 1 AGAAAAAAAA 0.950115 -328 ACAACAAGCCAGAGTAAAGATGTCGTTTTG 2 300 1 AGAGTAAAGA 0.91582 -301 AAAAACCGACAGAATAAAAAACAGCCATCA 3 326 0 AGAATAAAAA 0.978522 -275 ACGGTATAGAAGAAAAGAGAACTTAATAAC 3 531 0 AGAAAAGAGA 0.728982 -70 AAGCTAAAATAAAATAAAAAT 3 590 1 AAAATAAAAA 0.750054 -11 TTGTCCATTAAGAATACAGACACACACACA 5 50 0 AGAATACAGA 0.922126 -546 ACGATTTGACAGAGTAAAAAATGACCAGCG 5 138 1 AGAGTAAAAA 0.929699 -458 GGCCTTTGCAAGAATAAAAAATTCTTGACT 5 340 0 AGAATAAAAA 0.978522 -256 GGCCGGCTCACGAATAAAGAGTTGCATTTG 5 366 1 CGAATAAAGA 0.845379 -230 ********** Masking position 6 Map Score: 8.31765 Number of sites scoring better than the average of aligned sites = 3044 Number in coding regions = 1291 Number in noncoding regions = 1753 Number of orfs with sites within 600 bp upstream = 1198 Fraction of orfs with sites within 600 bp upstream = 0.192419 Motif number 6 GAGCCGGTTGCTGTTGCTTCAGCCTCTTATG 1 279 0 CTGTTGCTCA 0.98745 -200 TTTGTAAAAACTGCTGCTCCAAAAATCAATA 2 247 0 CTGCTGCTCA 0.996545 -354 ATAAGTGAAACGGTTGCTTCACCCAGCGGGA 3 446 1 CGGTTGCTCA 0.954333 -155 GTGGGACTTCCTGCTGGTCCTCTCGTATCTG 6 83 1 CTGCTGGTCT 0.945874 -218 CCTCTCGTATCTGCTGCTGCTCTTGTGTTTG 6 101 1 CTGCTGCTCT 0.990618 -200 GCTCTTGTGTTTGATGCTGCAACTGTTTATC 6 119 1 TTGATGCTCA 0.945773 -182 GTTTATCCTGTTTCTGCTGCACAACATCCAT 6 143 1 TTTCTGCTCA 0.926414 -158 TTGTGCTAAATTGCTACTACACTTGCTCGCT 6 193 1 TTGCTACTCA 0.926414 -108 ******** ** Masking position 5 Map Score: 4.00164 Number of sites scoring better than the average of aligned sites = 1105 Number in coding regions = 989 Number in noncoding regions = 116 Number of orfs with sites within 600 bp upstream = 93 Fraction of orfs with sites within 600 bp upstream = 0.0149374 Motif number 7 TCTTAGCCGAGATTCGCGGAGAAAATTGAAATCAAG 1 217 1 GATTGGGAAT 0.942788 -262 CCGCACGAGTGAAAGGGAAAGAAAAATTGCGTTTGT 1 418 0 GAAAGAGAAA 0.749618 -61 AATAGAATGGGAACGGCAGAGACTATAGTCTAGGGA 2 215 0 GAACGAGCAT 0.969519 -386 ATATTAATAAGATCCTAGATGAATATTTTCATGTGC 2 359 1 GATCTGGAAT 0.902972 -242 CCTCGTTCCTGAACGTTGTTGAAAATAGCGGGAATG 2 435 0 GAACTGGAAT 0.947211 -166 GCACGTGGGAGATCAGAAGAGTCGATTTGAGAAGGA 2 532 1 GATCGAGCAT 0.942847 -69 GTTATACATAGAAACGTATAGGACATTTCTTACTTT 3 171 1 GAAAGAGAAT 0.962753 -430 AACTCTCGAGGATAATAACAGACAATAAACCAAGAG 3 278 1 GATATAGCAT 0.64956 -323 TTTACATTTTGAACTGGGAAGAAAATTTTTTTTGCG 4 98 1 GAACGGGAAT 0.987847 -330 TAGTGTTTAAGAATAGTGGCGTTTATCGTTTTGCCC 4 381 1 GAATGGGTAT 0.833572 -47 TCAAAGATAAGAAAGGTGTTGGATATTTACTATTGT 5 240 1 GAAAGGGAAT 0.976399 -356 TTAACCGTACGAATTGCAAGGCAAATGCAACTCTTT 5 381 0 GAATGAGAAT 0.95204 -215 **** * * * * ** Masking position 2 Map Score: 2.83187 Number of sites scoring better than the average of aligned sites = 691 Number in coding regions = 504 Number in noncoding regions = 187 Number of orfs with sites within 600 bp upstream = 129 Fraction of orfs with sites within 600 bp upstream = 0.0207196 Motif number 8 GACTTGAAAGGTTGGTGTGAGAAAACCCGTA 1 114 0 GTTGGTGTGG 0.990256 -365 AAGCTAGATAGTGGGTTTGAGTGACTATCCC 2 102 1 GTGGGTTTGG 0.988967 -499 GATCAGAAGAGTCGATTTGAGAAGGATGATC 2 542 1 GTCGATTTGG 0.963318 -59 TTTTTATTCTGTCGGTTTTTGGTTGCCGTAG 3 336 1 GTCGGTTTTG 0.904583 -265 GCTGTGTTGTGTTGTGTTGTGTTGTGTTGTG 3 393 1 GTTGTGTTGG 0.843991 -208 CAACCTGGTATTTGGTGTGAGATAAAGTTAT 3 483 1 TTTGGTGTGG 0.888984 -118 AGTTTAGCTTGTGTATTTGGGAAAGGTACGC 4 254 1 GTGTATTTGG 0.854929 -174 GCTAATTTTAGTTGATTAGAGATTCTGAAAA 4 338 1 GTTGATTAGG 0.854916 -90 TATATATACTGTGTGTGTGTGTCTGTATTCT 5 39 1 GTGTGTGTGG 0.928132 -557 TGTCGTGGACGTTGGGGTGGGACTTCCTGCT 6 67 1 GTTGGGGTGG 0.975003 -234 TTTATTTAACGTTGATTTTTGTTATTAACCT 6 250 1 GTTGATTTTG 0.87722 -51 ********* * Masking position 2 Map Score: 3.78776 Number of sites scoring better than the average of aligned sites = 925 Number in coding regions = 648 Number in noncoding regions = 277 Number of orfs with sites within 600 bp upstream = 164 Fraction of orfs with sites within 600 bp upstream = 0.0263412 Motif number 9 TAACACTGGCAACCCAAGCATCTTAGCCGAG 1 197 1 AACCAAGCAT 0.937822 -282 GAGAAAATTGAAATCAAGAATAATAAAAATT 1 235 1 AAACAAGAAT 0.932988 -244 TTATGACCGTGAATCAAGAATTTTTATTATT 1 253 0 GAACAAGAAT 0.919702 -226 ACACGATTAAGACACAAGCGTTACTTCCCTA 2 190 1 GACCAAGCGT 0.974664 -411 GGAAAGGATTAACCCAAGCGTTGGTAAAGCC 2 405 1 AACCAAGCGT 0.979063 -196 GAACAGCCTTAAAGTAAGCGTAATGGGCATT 3 57 0 AAATAAGCGT 0.797567 -544 AACAGACAATAAACCAAGAGTTCATCCACGT 3 294 1 AAACAAGAGT 0.977358 -307 CCCGCTGGGTGAAGCAACCGTTTCACTTATT 3 445 0 GAACAACCGT 0.813938 -156 GCTTTATCGAAAAGCAAGAGAGCAGTAAACT 3 563 0 AAACAAGAGA 0.84579 -38 ATTTTCTATCAAGTCAAGAATTTTTTATTCT 5 329 1 AAGCAAGAAT 0.787141 -267 GCCGGCTCACGAATAAAGAGTTGCATTTGCC 5 367 1 GAAAAAGAGT 0.736704 -229 TGCAGCATCAAACACAAGAGCAGCAGCAGAT 6 109 0 AACCAAGAGC 0.883751 -192 *** ******* Masking position 6 Map Score: 3.92914 Number of sites scoring better than the average of aligned sites = 1056 Number in coding regions = 750 Number in noncoding regions = 306 Number of orfs with sites within 600 bp upstream = 267 Fraction of orfs with sites within 600 bp upstream = 0.0428847 Motif number 10 TGCTGTTGCTTCAGCCTCTTATGACCGTGA 1 272 0 TCAGCCTCTT 0.963243 -207 TCCCCTTTTTTCCTCCTCTTTTTTTATTAT 2 129 1 TCCTCCTCTT 0.968111 -472 GCTCCGTTCCTCTTCCTCTTTCTCATACCG 2 581 0 TCTTCCTCTT 0.953452 -20 CAAGCTTTTCTCATTCTCTTCGGAGTGTTT 4 155 0 TCATTCTCTT 0.957567 -273 AGCATTTTCTTTATCATCTTTTGTTTTGTT 5 481 1 TTATCATCTT 0.874153 -115 ATAAGTCCTGTTATCCTCTTCTTTTATTTC 5 537 1 TTATCCTCTT 0.984178 -59 CTGCAACTGTTTATCCTGTTTCTGCTGCAC 6 135 1 TTATCCTGTT 0.956535 -166 TCGCTTTTACTTATTCTGTTTGTAGTTGAC 6 219 1 TTATTCTGTT 0.834261 -82 ********** Masking position 7 Map Score: 3.00061 Number of sites scoring better than the average of aligned sites = 1468 Number in coding regions = 1177 Number in noncoding regions = 291 Number of orfs with sites within 600 bp upstream = 256 Fraction of orfs with sites within 600 bp upstream = 0.0411179 Motif number 11 TCACAGTGCGATATAATCAATCCTGGTAAA 1 455 0 ATATAATCAA 0.927575 -24 TCAAAATGAAATAAAATCAAAATAATAAAA 2 150 0 ATAAAATCAA 0.981101 -451 TCGTGTTGAAATAAAATCAAAATGAAATAA 2 166 0 ATAAAATCAA 0.981101 -435 TAAAGCTAAAATAAAATAAAAAT 3 588 1 ATAAAATAAA 0.889269 -13 ATATAGATTCATTAAATCAATTTGATCAG 5 10 0 ATTAAATCAA 0.927572 -586 CAGCGTAAAAATAACATCAATACGTCAAGG 5 163 1 ATAACATCAA 0.949954 -433 ********** Masking position 6 Map Score: 2.41874 Number of sites scoring better than the average of aligned sites = 143 Number in coding regions = 102 Number in noncoding regions = 41 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 12 GCGAAGAAAAAAAACCCTATGTATTCTAGA 1 71 1 AAAACCCTAT 0.928222 -408 GTTTCTATGTATAACCCTAAGATAGTCAGG 3 156 0 ATAACCCTAA 0.928216 -445 GGCTGGCATCAATACCCTAACTAAACCCTG 3 230 0 AATACCCTAA 0.954681 -371 GCCAGCCCTAAATCCCCTAAATAAGAACTC 3 253 1 AATCCCCTAA 0.814581 -348 TTAAATGGGCAAAACGATAAACGCCACTAT 4 393 0 AAAACGATAA 0.802541 -35 ATTTACGGCGATAATGCTAATACTTTAGCG 5 80 1 ATAATGCTAA 0.784887 -516 TAGCGCGGGTAATATCCTAATAGTAATTTT 5 105 1 AATATCCTAA 0.855987 -491 GATGATAAAGAAAATGCTAAAGGTGAAAAT 5 469 0 AAAATGCTAA 0.929212 -127 ACTTATCAACTAAACGCTAAAGTAAATGAA 5 513 0 TAAACGCTAA 0.867449 -83 CACAACATATAAAACGCTATTATAATGGAT 6 168 0 AAAACGCTAT 0.928155 -133 ********** Masking position 8 Map Score: 1.52899 Number of sites scoring better than the average of aligned sites = 1146 Number in coding regions = 826 Number in noncoding regions = 320 Number of orfs with sites within 600 bp upstream = 254 Fraction of orfs with sites within 600 bp upstream = 0.0407967 Motif number 13 TTACCAATATATTTGATAAGAAAGTATATC 1 333 0 ATTTGATAAG 0.974281 -146 CGTTTTGGCCATTTGGACAGAATCTTAATC 2 323 1 ATTTGGACAG 0.860416 -278 AGAAGAGTCGATTTGAGAAGGATGATCAGC 2 546 1 ATTTGAGAAG 0.962251 -55 AGTAAATATAATTTGGTAAGCGTGTTGTGC 3 365 1 ATTTGGTAAG 0.973774 -236 TAGCTTGTGTATTTGGGAAAGGTACGCAAA 4 258 1 ATTTGGGAAA 0.736159 -170 TGCTAATTTTAGTTGATTAGAGATTCTGAA 4 337 1 AGTTGATTAG 0.841072 -91 CATTAAATCAATTTGATCAG 5 1 0 ATTTGATCAG 0.962252 -595 TTTAGCGTTTAGTTGATAAGTCCTGTTATC 5 522 1 AGTTGATAAG 0.955459 -74 ********** Masking position 9 Map Score: 1.25206 Number of sites scoring better than the average of aligned sites = 548 Number in coding regions = 439 Number in noncoding regions = 109 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 14 GCATACGGGTTTTCTCACACCAACCTTTCAA 1 111 1 TTCTCACACC 0.992361 -368 AAGGGGATAGTCACTCAAACCCACTATCTAG 2 105 0 TACTCAAACC 0.93434 -496 CCTCTTCCTCTTTCTCATACCGTTCTTGCTG 2 572 0 TTCTCATACC 0.970333 -29 ATCCGCCTTATTTCCGAAACCTGACTATCTT 3 137 1 TTCCGAAACC 0.931418 -464 TCTATAACTTTATCTCACACCAAATACCAGG 3 486 0 TTCTCACACC 0.992361 -115 CAATAGTAAATATCCAACACCTTTCTTATCT 5 244 0 TTCCAACACC 0.953802 -352 * ********* Masking position 7 Map Score: 0.244448 Number of sites scoring better than the average of aligned sites = 153 Number in coding regions = 106 Number in noncoding regions = 47 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159 Motif number 15 TCTATTATTCAGTATATATATGGAATTAAC 1 171 1 AGTATATATA 0.919846 -308 TGTTAGCTGCAATAAATGTAAAAAGACTAT 1 391 0 AATAAATGTA 0.805498 -88 TGGTTGCCGTAGTAAATATAATTTGGTAAG 3 355 1 AGTAAATATA 0.963549 -246 ACACACACACAGTATATATATATAGATTCA 5 29 0 AGTATATATA 0.919846 -567 AAATTACAATAGTAAATATCCAACACCTTT 5 251 0 AGTAAATATC 0.89053 -345 TAAACGCTAAAGTAAATGAACAAACAAAAC 5 503 0 AGTAAATGAA 0.93284 -93 CTCGCAGTTAAGTAAATGAAGAAATGAAAT 5 562 0 AGTAAATGAA 0.93284 -34 ********** Masking position 6 Map Score: 0.0975108 Number of sites scoring better than the average of aligned sites = 626 Number in coding regions = 280 Number in noncoding regions = 346 Number of orfs with sites within 600 bp upstream = 234 Fraction of orfs with sites within 600 bp upstream = 0.0375843