AlignACE version 2.2 July 7, 1998 AlignACE -jSPC.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YAL047C 300 bp YAL047C SPC72 1-1869 Spc72p interacts with Stu2p in the two-hybrid assay\; Spc72p localizes to the spindle pole bodies. Molecular weight is 72 kD #2 YDR201W 300 bp YDR201W SPC19 1-498 component of spindle pole #3 YER018C 300 bp YER018C SPC25 1-666 component of spindle pole #4 YGL093W 420 bp YGL093W SPC105 1-2754 component of spindle pole #5 YHR172W 600 bp YHR172W SPC97 1-2472 spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP #6 YJR010C-A 300 bp YJR010C-A SPC1 1-285 Homologue of the SPC12 subunit of mammalian signal peptidase complex. Protein is important for efficient signal peptidase activity. #7 YKL042W 600 bp YKL042W SPC42 1-1092 component of the spindle pole body #8 YKR037C 300 bp YKR037C SPC34 1-888 component of spindle pole #9 YLR066W 300 bp YLR066W SPC3 1-555 signal peptidase subunit #10 YML055W 600 bp YML055W SPC2 1-537 subunit of signal peptidase complex, homologous to mammalian protein SPC25 #11 YMR117C 300 bp YMR117C SPC24 1-642 component of spindle pole #12 YNL126W 378 bp YNL126W SPC98 1-2541 spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP Motif number 1 AAATCAAACCAAACCAAAACAAAACAAAAAC 3 208 1 AAACAAAACA 0.935609 -93 AACCAAAACAAAACAAAAACAAAAACAAAAA 3 219 1 AAAAAAAACA 0.956572 -82 ACAAAAACAAAAACAAAAACAGGCTAAGCCG 3 231 1 AAAAAAAACA 0.956572 -70 AATGCAGTTCAAAACAAAAAATAAGCAAATA 4 72 1 AAACAAAAAA 0.932324 -349 AAAAATAAGCAAATAAAAAAATTTTCAGAAT 4 88 1 AAAAAAAAAA 0.954304 -333 ATGTGGGCATAGAGGAACACAAGAAATAGAA 4 177 0 AGAGAACACA 0.826415 -244 TAATACAAATAGATAAACACATAACAAAACA 4 315 1 AGAAAACACA 0.861367 -106 ATAAACACATAACAAAACAAAGGCTAATTAG 4 327 1 AACAAACAAA 0.68086 -94 TCTTCTTGTTAAAACTACAAAAAATA 5 6 0 AAACTACAAA 0.532717 -595 TTTACTCACAAAACATAAACATAAAATGTAA 5 49 1 AAAATAAACA 0.833822 -552 TAAGTAATGAAAATGTAAACAAAAAGGAACT 5 435 1 AAAGTAAACA 0.793589 -166 GAAACTATTTAGAGAAAAAAACGAGGCAGAT 6 209 1 AGAAAAAAAA 0.941915 -92 TAACGGACATAAAAAAAAAAATTGTAACATT 7 111 1 AAAAAAAAAA 0.954304 -490 GGTACAAAATAAATAAAAAAATACCTGCTAA 7 400 1 AAAAAAAAAA 0.954304 -201 GAACACAATCAGAAGAAAACAACAAGGACTT 7 502 1 AGAGAAAACA 0.929105 -99 GCGCCAAAAAAAAGAAAAAAAAAACCAAGAG 7 540 1 AAAAAAAAAA 0.954304 -61 GTTTTCTAAAAAAAAAAAAGGCTATTATA 7 582 0 AAAAAAAAAA 0.954304 -19 CAATAAACAAAGCTCAAAAAAATTAGATCAT 8 248 1 AGCCAAAAAA 0.750513 -53 AAAAGATAATAGATGAAAAAAAGGTAGTATT 9 116 0 AGAGAAAAAA 0.925514 -185 TGAGAAAAAGAGATGAAAAAATGCGATGAGC 10 128 1 AGAGAAAAAA 0.925514 -473 AAAAAAAAAAAAAAAAAAAAACTGAAAAAGC 10 204 0 AAAAAAAAAA 0.954304 -397 CGAGATGCTGAAAAAAAAAAAAAAAAAAAAA 10 218 0 AAAAAAAAAA 0.954304 -383 AGCATCTCGAAGAGCAAAAAAAAGGAACGAA 10 240 1 AGACAAAAAA 0.91451 -361 GATTTTGCAGAACTGAAAAAATCTCTTAAAG 10 487 0 AACGAAAAAA 0.81818 -114 AAAGCTATGTAGCAAAAAACACTAAGTACAT 11 73 0 AGCAAAAACA 0.827877 -228 CGTCAAAAGTAAATGTAAACAATGAAGTCTT 11 196 1 AAAGTAAACA 0.793589 -105 GTTTGTAAACAAAACTAAACAAAACAAACAA 12 248 1 AAACTAAACA 0.76798 -131 AAACTAAACAAAACAAACAAATATACTCATT 12 259 1 AAAAAACAAA 0.883538 -120 *** ******* Masking position 7 Map Score: 32.8071 Number of sites scoring better than the average of aligned sites = 11842 Number in coding regions = 2466 Number in noncoding regions = 9376 Number of orfs with sites within 600 bp upstream = 2421 Fraction of orfs with sites within 600 bp upstream = 0.388853 Motif number 2 GATTTCAATTAAAATAATAAATACATATATAAAGA 1 209 0 AAATAAAAAA 0.86291 -92 CTAAGCAAACAACATAAGGAAAGTTATAGCC 1 280 1 AAATAAAAGT 0.621359 -21 CCAACTGGAAATTAGAAGGAAGGAAGACAACTGTA 2 98 0 ATAGAAAAGA 0.802117 -203 AGCAACAATGAAAATGAATAATAAACAGATCACAG 2 233 1 AAATGAAAAA 0.79036 -68 TGAAGCACTGAACGGGACCAACGCAATTATGTCCG 3 45 0 AAGGGAAAGA 0.920816 -256 TCCGCGTAAAAAGGGAAAAAAAGCAGATATATGTA 3 134 0 AAGGAAAAGA 0.951017 -167 GGCATAGAGGAACACAAGAAATAGAATCTCCAAGA 4 168 0 AAACAAAAAA 0.53805 -253 GTTAGCATATATAGGAAATAACGTACTATGTGGGC 4 200 0 ATGGAAAAGA 0.834423 -221 TTACTCACAAAACATAAACATAAAATGTAATAAAG 5 50 1 AAATAAATAA 0.589132 -551 GTATTTTTCAAAAAGGATCAGTGAAAGTGTCGGTA 5 100 1 AAAGGAAGGA 0.589119 -501 AAAAAACGCCAAAATAAGTAATGAAAATGTAAACA 5 421 1 AAATAAAAGA 0.952632 -180 CAATTAGTCTATAATGAAGAAAGAACCAGGTGGTA 5 490 0 ATATGAAAGA 0.757673 -111 ATGACGGTTTAATGCAAGTAATGTAATATAATACA 6 20 1 AAGCAAAAGA 0.822275 -281 ATGTATTTAAAATGTGAAAAGTGTACACATGGCGT 6 152 0 AAGTGAAGGA 0.696568 -149 TCGATATATAAATATAAATAACGGACATAAAAAAA 7 93 1 AAATAAAAGA 0.952632 -508 AACCTGGTACAAAATAAATAAAAAAATACCTGCTA 7 395 1 AAATAAAAAA 0.86291 -206 AATATCAAATAAAGTAAGGAAGGTAATACAAAAAG 7 433 1 AAGTAAAAGA 0.961544 -168 AGCGCCAAAAAAAAGAAAAAAAAAACCAAGAGAAC 7 539 1 AAAGAAAAAA 0.830153 -62 AAAAAAAACCAAGAGAACGAAAGCTTTATAATAGC 7 556 1 AAAGAAAAGT 0.560296 -45 TGGAAGCGCGAAAATAAGCAAGAGACATTTGAAAA 8 209 1 AAATAAAAAA 0.86291 -92 GAGACATTTGAAAATAATCAATAAACAAAGCTCAA 8 230 1 AAATAAAAAA 0.86291 -71 GAAAAATTTCAACGTAATTAAAAAAAGATAATAGA 9 134 0 AAGTAAAAAA 0.886692 -167 TACCAGACAAAAAATGACAATTGTACACGTTGAAA 10 519 1 AAATGAATGA 0.732908 -82 TACACGTTGAAACGGAATTATAGAAGGAAAAGCAC 10 542 1 AAGGAAATGA 0.815592 -59 AGCACAAGTTATTGTAAGGAAAAGAGACGCCTGTT 10 572 1 ATGTAAAAAA 0.6701 -29 CAGTAAATGAAATGTAAGGAATGTACTTAGTGTTT 11 53 1 AAGTAAAAGA 0.961544 -248 GTCAAAAGTAAATGTAAACAATGAAGTCTTCAAAA 11 197 1 AAGTAAAAGA 0.961544 -104 AGCAAGTGTAAAGGGAAGGAACGCAAGAGCC 11 280 1 AAGGAAAAGA 0.951017 -21 TGATCGCGCAATGGTGATGATTGGATCTTCATATC 12 135 1 ATGTGAATGA 0.469637 -244 ACCCGTATATATTATGATAATAGAAATCCAACAAC 12 193 0 ATATGAATGA 0.415973 -186 ** **** ** * * Masking position 7 Map Score: 22.4175 Number of sites scoring better than the average of aligned sites = 4844 Number in coding regions = 2320 Number in noncoding regions = 2524 Number of orfs with sites within 600 bp upstream = 1561 Fraction of orfs with sites within 600 bp upstream = 0.250723 Motif number 3 CCGTTTTAATACAAATAGATAAACACATAAC 4 309 1 ACAAATAGAA 0.878185 -112 TGTAGTTTTAACAAGAAGACAAATTCTTGAC 5 18 1 ACAAGAAGAA 0.954588 -583 AAAGAAAGTATCAAAAAGGTAGCTTTACCGA 5 129 0 TCAAAAAGGA 0.921695 -472 ACTTATTCTCATAAAAAGAAAGTATCAAAAA 5 143 0 ATAAAAAGAA 0.845504 -458 GAAAATGTAAACAAAAAGGAACTAAGTTGAA 5 443 1 ACAAAAAGGA 0.969438 -158 GTCAGAAGTTAGAAATAGATATGATTATGAT 7 154 0 AGAAATAGAA 0.766729 -447 ACAGTATATTAGAAGTAGACAGATAAAGATT 7 229 0 AGAAGTAGAA 0.66044 -372 CAATAGCAGCATAAAAAGACAGGTATGATGT 7 260 0 ATAAAAAGAA 0.845504 -341 ATAACATGTTTCAAAAAGGCATCATATTGTT 7 321 0 TCAAAAAGGA 0.921695 -280 GGAAGGTAATACAAAAAGAGAGCGTTGGCTC 7 450 1 ACAAAAAGAA 0.97262 -151 TGCAGCGCCAAAAAAAAGAAAAAAAAAACCA 7 536 1 AAAAAAAGAA 0.910801 -65 ACGTGTGGCTTCAAGAAGACACCAAAGGCAG 9 84 0 TCAAGAAGAA 0.886365 -217 ATAATAGATGAAAAAAAGGTAGTATTCACGT 9 111 0 AAAAAAAGGA 0.901166 -190 CAACGTAATTAAAAAAAGATAATAGATGAAA 9 129 0 AAAAAAAGAA 0.910801 -172 CAAGAGTTTGAGAAAAAGAGATGAAAAAATG 10 120 1 AGAAAAAGAA 0.941847 -481 AAAAAAAAACTGAAAAAGCCATATAAATATC 10 192 0 TGAAAAAGCA 0.655016 -409 TCGAAGAGCAAAAAAAAGGAACGAAAAAGTG 10 246 1 AAAAAAAGGA 0.901166 -355 CATTGATCTTACAAGAAGCTAGCTAATGGTA 10 416 0 ACAAGAAGCA 0.869127 -185 TTCCGCCTCATCAAGAAGGCATATTCCTTTA 10 455 0 TCAAGAAGGA 0.874454 -146 ********* * Masking position 7 Map Score: 16.0947 Number of sites scoring better than the average of aligned sites = 3210 Number in coding regions = 1313 Number in noncoding regions = 1897 Number of orfs with sites within 600 bp upstream = 1333 Fraction of orfs with sites within 600 bp upstream = 0.214102 Motif number 4 TTGCGCTTTCCGCGTAAAAAGGGAAAAAAA 3 147 0 CGCGTAAAAA 0.944103 -154 AACAACAAAAAACGCCAAAATAAGTAATGA 5 415 1 AACGCCAAAA 0.786094 -186 GTACACATCTTGCGTGAAAAA 5 590 1 TGCGTGAAAA 0.905467 -11 CCACAATAGCAGCATAAAAAGACAGGTATG 7 264 0 AGCATAAAAA 0.787307 -337 ATTGTTTTTTCGCGCGAAAAGATGACGGTT 7 297 0 CGCGCGAAAA 0.981869 -304 ACTTTTTTGCAGCGCCAAAAAAAAGAAAAA 7 529 1 AGCGCCAAAA 0.976778 -72 ACCTTGTGGAAGCGCGAAAATAAGCAAGAG 8 203 1 AGCGCGAAAA 0.976778 -98 CCTTGACAGGCGCGTCAAAAGTAAATGTAA 11 184 1 CGCGTCAAAA 0.980386 -117 TCAATGGAGGAGCATGAAAACCCCTTAAAT 12 95 1 AGCATGAAAA 0.916351 -284 ACAAACGCGACGCATCAAAAATCGTTACCC 12 224 0 CGCATCAAAA 0.93379 -155 ********** Masking position 7 Map Score: 5.77885 Number of sites scoring better than the average of aligned sites = 356 Number in coding regions = 191 Number in noncoding regions = 165 Number of orfs with sites within 600 bp upstream = 138 Fraction of orfs with sites within 600 bp upstream = 0.0221651 Motif number 5 TTACACGAGCTTTTTTGGTTCCAAACTGTT 1 139 0 TTTTTTGGTT 0.924172 -162 TTTCCTTATGTTGTTTGCTTAGTTTTTTGA 1 272 0 TTGTTTGCTT 0.884171 -29 TGGTTTGATTTATTTTGGTTTGGCTTAAAT 3 189 0 TATTTTGGTT 0.785904 -112 TGTTTTGTTTTGGTTTGGTTTGATTTATTT 3 204 0 TGGTTTGGTT 0.89867 -97 GTTTTTGTTTTTGTTTTGTTTTGGTTTGGT 3 215 0 TTGTTTTGTT 0.967474 -86 AGCCTGTTTTTGTTTTTGTTTTTGTTTTGT 3 226 0 TGTTTTTGTT 0.843929 -75 TATTTGCTTATTTTTTGTTTTGAACTGCAT 4 73 0 TTTTTTGTTT 0.858991 -348 GAAAATTTTTTTATTTGCTTATTTTTTGTT 4 84 0 TTATTTGCTT 0.603132 -337 CTTTCGCGTATTGTTTTTTTCAATGAGAGA 4 262 0 TTGTTTTTTT 0.936976 -159 TAATTAGCCTTTGTTTTGTTATGTGTTTAT 4 327 0 TTGTTTTGTT 0.967474 -94 TAGATTATACTAGTTTGGTTGGCTTCTTAG 6 97 1 TAGTTTGGTT 0.880155 -204 ATGTTACAATTTTTTTTTTTATGTCCGTTA 7 111 0 TTTTTTTTTT 0.881389 -490 AAAGTCCTTGTTGTTTTCTTCTGATTGTGT 7 504 0 TTGTTTTCTT 0.903022 -97 TTCGTTCTCTTGGTTTTTTTTTTCTTTTTT 7 547 0 TGGTTTTTTT 0.843929 -54 TATAATAGCCTTTTTTTTTTTTAGAAAAC 7 582 1 TTTTTTTTTT 0.881389 -19 GGTGATGATCTAATTTTTTTGAGCTTTGTT 8 253 0 TAATTTTTTT 0.471312 -48 TTGCCACGTCTTATTTTGTTAGGTGATGAT 8 274 0 TTATTTTGTT 0.855528 -27 TTCAGTTTTTTTTTTTTTTTTTTTTTTTTT 10 209 1 TTTTTTTTTT 0.881389 -392 TTTTTTTTTTTTTTTTTTTTCAGCATCTCG 10 219 1 TTTTTTTTTT 0.881389 -382 TTGTTTTGTTTAGTTTTGTTTACAAACGCG 12 245 0 TAGTTTTGTT 0.899585 -134 GTATATTTGTTTGTTTTGTTTAGTTTTGTT 12 255 0 TTGTTTTGTT 0.967474 -124 ********** Masking position 5 Map Score: 21.8821 Number of sites scoring better than the average of aligned sites = 2499 Number in coding regions = 1224 Number in noncoding regions = 1275 Number of orfs with sites within 600 bp upstream = 887 Fraction of orfs with sites within 600 bp upstream = 0.142467 Motif number 6 CTTTTAGTTTACTTTTGCTTCCCTCTGTGTATA 1 175 1 ACTTTGCTCC 0.989088 -126 CTTCGAGGAAATTTGCGCTTTCCGCGTAAAAAG 3 156 0 ATTGCGCTCC 0.922568 -145 TTATAGACTAATTGTTGCGTGCCAAGAAGTTGT 5 511 1 ATTTTGCTCC 0.962372 -90 TTTGAACTAGCCTGTTTCCTCCCTGCTTTGCCA 9 23 1 CCTTTTCTCC 0.900379 -278 GGCTCATCGCATTTTTTCATCTCTTTTTCTCAA 10 127 0 ATTTTTCTTC 0.653598 -474 TTGCCGTGGCACTTTTTCGTTCCTTTTTTTTGC 10 253 0 ACTTTTCTCC 0.9748 -348 GATTAAAAGCACTAGTGCGTCCCTCAAGTCTAT 10 337 1 ACTGTGCTCC 0.98992 -264 CCTTACAATAACTTGTGCTTTTCCTTCTATAAT 10 558 0 ACTGTGCTTC 0.944372 -43 TTCCCTTTACACTTGCTCTTCCCTCGTTACTTC 11 264 0 ACTGCTCTCC 0.947425 -37 GGCTCTTGCGTTCCTTCCCTTTAC 11 287 0 GCTTTGCTCC 0.954911 -14 *** **** * ** Masking position 10 Map Score: 3.27019 Number of sites scoring better than the average of aligned sites = 346 Number in coding regions = 240 Number in noncoding regions = 106 Number of orfs with sites within 600 bp upstream = 90 Fraction of orfs with sites within 600 bp upstream = 0.0144555 Motif number 7 AGACAACTGTAAATTCTTGGCATGGTAGAAC 2 78 0 AATTCTTGGC 0.987811 -223 GTGTTCTAGTAATCTCTTAGGGTGTAATGCA 4 47 1 AACTCTTAGG 0.904725 -374 ACAAGAAGACAAATTCTTGACTTTACTCACA 5 28 1 AATTCTTGAC 0.900492 -573 AATACGTTTTAAGTTCGTTGCTGACGGCTAA 5 211 1 AATTCGTTGC 0.879126 -390 TCCTCTTACCAATTTCTTAGCCGTCAGCAAC 5 227 0 AATTCTTAGC 0.964767 -374 ATACACAAACAACTTCTTGGCACGCAACAAT 5 521 0 AATTCTTGGC 0.987811 -80 TCTTTTTCTCAAACTCTTGGGCTTAAATTTT 10 108 0 AACTCTTGGG 0.965639 -493 CTAATGTGAAAAACTCTTTGCCGTGGCACTT 10 272 0 AACTCTTTGC 0.96408 -329 ** ******** Masking position 2 Map Score: 1.44731 Number of sites scoring better than the average of aligned sites = 524 Number in coding regions = 405 Number in noncoding regions = 119 Number of orfs with sites within 600 bp upstream = 110 Fraction of orfs with sites within 600 bp upstream = 0.0176678 Motif number 8 TTTATATATGTATTTATTATTTTAATTGAA 1 211 1 TATTTATTAT 0.965232 -90 TTTCATTATGTATTTATTATTGGCGATTAT 2 174 1 TATTTATTAT 0.965232 -127 GTCTGTGATCTGTTTATTATTCATTTTCAT 2 240 0 TGTTTATTAT 0.852717 -61 AAGTTGTATTTCTTTATTATGTATGATACG 5 170 1 TCTTTATTAT 0.852717 -431 GTATCCATAATATTTATTATCAAACTGATC 5 548 1 TATTTATTAT 0.965232 -53 TCTATAAATGTATAGATTATACTAGTTTGG 6 85 1 TATAGATTAT 0.809306 -216 GGTATTTTTTTATTTATTTTGTACCAGGTT 7 395 0 TATTTATTTT 0.779125 -206 GAGCTTTGTTTATTGATTATTTTCAAATGT 8 233 0 TATTGATTAT 0.914199 -68 TCGTTACCCGTATATATTATGATAATAGAA 12 203 0 TATATATTAT 0.917067 -176 CTGGCTCTTCTATTTCTTATATGCAGATGA 12 298 0 TATTTCTTAT 0.839437 -81 TAGACTGTAATATATATTATGGTTATGCTT 12 334 0 TATATATTAT 0.917067 -45 ********** Masking position 7 Map Score: 7.25682 Number of sites scoring better than the average of aligned sites = 462 Number in coding regions = 140 Number in noncoding regions = 322 Number of orfs with sites within 600 bp upstream = 177 Fraction of orfs with sites within 600 bp upstream = 0.0284292 Motif number 9 CTTCCCAGTTGACTTCTTAGTGGTCAATTGT 1 91 0 GCTTCTTAGT 0.928039 -210 GGAGGGGGCCGTCTTCTTTTTTCCAGTTCTA 2 53 1 GCTTCTTTTT 0.943004 -248 GAACATCTCTGTCTTTTCTGTTGTACATATA 3 111 1 GCTTTTCTGT 0.939866 -190 GGCGGGTGGCGCCTTCTCTTTCGCGTATTGT 4 278 0 GCTTCTCTTT 0.893075 -143 TCAAGAATTTGTCTTCTTGTTAAAACTACAA 5 17 0 GCTTCTTGTT 0.757033 -584 ACTTATTTTGGCGTTTTTTGTTGTTCCGCGA 5 409 0 GGTTTTTTGT 0.858343 -192 TAGTTTGGTTGGCTTCTTAGCGTTTCTCTCA 6 107 1 GCTTCTTAGC 0.913863 -194 AAACAACAAGGACTTTTTTGCAGCGCCAAAA 7 518 1 GCTTTTTTGC 0.962222 -83 CTTTATAATAGCCTTTTTTTTTTTTAGAAAA 7 579 1 GCTTTTTTTT 0.898984 -22 GATCGTGAAGGACTTTTCTGAAACTGTTGTT 8 31 1 GCTTTTCTGA 0.711306 -270 ATTTTCTCTGGTCTTCTTTGCTGCTTGAACC 10 52 0 GCTTCTTTGC 0.979318 -549 AATGTACTTAGTGTTTTTTGCTACATAGCTT 11 72 1 GGTTTTTTGC 0.832909 -229 TTATTTTGAAGACTTCATTGTTTACATTTAC 11 204 0 GCTTCATTGT 0.859656 -97 * ********* Masking position 5 Map Score: 4.29728 Number of sites scoring better than the average of aligned sites = 1472 Number in coding regions = 1135 Number in noncoding regions = 337 Number of orfs with sites within 600 bp upstream = 290 Fraction of orfs with sites within 600 bp upstream = 0.0465789 Motif number 10 ********** No masking Map Score: 8.71369e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ********** No masking Map Score: 8.71369e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ACGCCCTGTGAAAACAAACTTTATAATCGC 2 196 0 AAAACAAACT 0.754853 -105 ACCAAAACAAAACAAAAACAAAAACAAAAA 3 220 1 AACAAAAACA 0.933 -81 CAAAAACAAAAACAAAAACAGGCTAAGCCG 3 232 1 AACAAAAACA 0.933 -69 ATACGTATACAACACATACACACATACAAG 3 280 1 AACACATACA 0.910994 -21 TTACTCACAAAACATAAACATAAAATGTAA 5 50 1 AACATAAACA 0.887603 -551 ATATTATGGATACACAAACAACTTCTTGGC 5 531 0 TACACAAACA 0.969776 -70 AATAAGGTTCTACACAAACATCTATAAATG 6 65 1 TACACAAACA 0.969776 -236 GGTCAAGCAATACTCAAACAAGATCAACGT 6 262 1 TACTCAAACA 0.803028 -39 AGCGGTTTCGAACACAATCAGAAGAAAACA 7 493 1 AACACAATCA 0.910994 -108 CCATTCTACCAACACAAACTTAGACCACTG 9 57 1 AACACAAACT 0.952351 -244 AAAACTAAACAAAACAAACAAATATACTCA 12 258 1 AAAACAAACA 0.925429 -121 ********** Masking position 6 Map Score: 7.4116 Number of sites scoring better than the average of aligned sites = 730 Number in coding regions = 495 Number in noncoding regions = 235 Number of orfs with sites within 600 bp upstream = 199 Fraction of orfs with sites within 600 bp upstream = 0.0319627 Motif number 13 ********** No masking Map Score: 8.71369e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ATACACAGAGGGAAGCAAAAGTAAACTAAA 1 177 0 GGAAGCAAAA 0.858273 -124 GAAATTAGAAGGAAGGAAGACAACTGTAAA 2 96 0 GGAAGGAAGA 0.980115 -205 GTGTACGAATTGAAGGATAGGCAAAATAAC 2 280 1 TGAAGGATAG 0.571737 -21 GTTCACGAGAGGAAGGAAGATGGTCAATCT 3 85 0 GGAAGGAAGA 0.980115 -216 TGAATTATTAGGAGGGGAAACTTGGATACG 5 327 0 GGAGGGGAAA 0.928156 -274 GACTACCAGGGGAAGGGTAATAGCAACGCT 5 381 0 GGAAGGGTAA 0.890649 -220 CTCGCGTGGAGGAGGGATAATAGAAACTAT 6 187 1 GGAGGGATAA 0.948995 -114 ATCAAATAAAGTAAGGAAGGTAATACAAAA 7 436 1 GTAAGGAAGG 0.791485 -165 GCAAAAAAAAGGAACGAAAAAGTGCCACGG 10 253 1 GGAACGAAAA 0.858273 -348 ACGGAATTATAGAAGGAAAAGCACAAGTTA 10 553 1 AGAAGGAAAA 0.828066 -48 ACAAGTTATTGTAAGGAAAAGAGACGCCTG 10 575 1 GTAAGGAAAA 0.886312 -26 AAAGAAGTAACGAGGGAAGAGCAAGTGTAA 11 261 1 CGAGGGAAGA 0.776564 -40 AAGTGTAAAGGGAAGGAACGCAAGAGCC 11 283 1 GGAAGGAACG 0.902742 -18 ATAAACATAGGGAGGGATAGGAGATTGTTA 12 58 0 GGAGGGATAG 0.925022 -321 ********** Masking position 3 Map Score: 4.32902 Number of sites scoring better than the average of aligned sites = 1837 Number in coding regions = 1236 Number in noncoding regions = 601 Number of orfs with sites within 600 bp upstream = 493 Fraction of orfs with sites within 600 bp upstream = 0.0791841 Motif number 15 ********** No masking Map Score: 8.71369e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0