AlignACE version 2.2 July 7, 1998 AlignACE -jSPO.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YAL009W 300 bp YAL009W spo7 1-780 sporulation protein #2 YHL022C 303 bp YHL022C spo11 1-1197 Encodes one of the earliest meiosis-specific recombination functions. #3 YHR014W 599 bp YHR014W spo13 1-876 Encodes a 33.4 kDa basic protein that localizes to the nucleus. Thought to be a meiosis-specific negative regulator of M-phase during meiosis I, coordinating sister-chromatid\/centromere cohesion with nuclear division. Spo13p has transcriptional activation activity in one-hybrid analysis. #4 YHR152W 585 bp YHR152W SPO12 1-522 20 kDa protein with negatively charged C-terminus required for function\; thought to be a positive regulator of exit from M-phase in mitosis and meiosis. Spo12p interacts with Dbf2p and Dbf20p protein kinases. #5 YHR153C 300 bp YHR153C SPO16 1-597 sporulation protein #6 YKR031C 300 bp YKR031C spo14 1-5052 Phospholipase D #7 YMR017W 600 bp YMR017W SPO20 1-1194 DBF2 Interacting Protein\; SNAP 25 homolog #8 YNL012W 544 bp YNL012W spo1 1-1611 encodes a protein with high similarity to phospholipase B Motif number 1 TTAATTTTACTTTGACTTTATTGTTGAGTGAA 1 178 0 TTGACTTTAT 0.613958 -123 TCCACTACCTTTCTTCCTTTGTGTGTATAATC 1 260 0 TCTTCCTTTT 0.72751 -41 TCTTTATATTTATTTATTTTCTCTCTGTGTAG 2 39 1 TTTTATTTTT 0.914765 -265 GTAGTGACAATTTTTTTTTAATGTTTCATGTT 2 67 1 TTTTTTTTAT 0.877015 -237 TCTTTTACGTTATTCCTTTTATAATTTTAATT 2 159 0 TTTCCTTTTT 0.897045 -145 TTTCAGACGGTGCTTTTTTTTTCTGTTCAAAA 3 104 1 TCTTTTTTTT 0.874452 -496 CCAATGCTAATTTGTCTTTATTGATCTCTAGG 3 167 0 TTGTCTTTAT 0.933258 -433 TATTCTTCCCTTTTTCTTTTGTTCATTTGCAT 4 32 0 TTTTCTTTTT 0.980208 -554 AATTTTGGCATTTTTCTTTTTTCCACAATGGG 4 246 0 TTTTCTTTTT 0.980208 -340 TCAGACCTGCTTTTTTTTTTCTGTAACCCTTT 4 293 0 TTTTTTTTTT 0.953901 -293 AAACAGGGCATCTTTCCTTTTTTTCTCCTAAT 4 372 1 TTTTCCTTTT 0.888042 -214 CATTGTGATGTATTTATTTATTGGCAAAAAAT 5 110 1 TTTTATTTAT 0.787168 -191 CTATATCAGATGTGACTTTTCTTTTTCACTCA 5 165 0 TTGACTTTTT 0.821903 -136 TTTACACTATTTCGTATTTTCTCGGTTTTAGC 5 227 0 TCGTATTTTT 0.747452 -74 TCGTTATGTTTGTGTCTTTTGTTCAACCCAAA 6 146 0 TTGTCTTTTT 0.975947 -155 CGGAATCATCTCTTCATTTTTTCAGCGCTTGT 7 84 1 TTTCATTTTT 0.653755 -517 AGTATTTCCTTCTTTCTTTTCTTTGTAGTTTT 7 185 1 TTTTCTTTTT 0.980208 -416 TTAACACTATTATTTTTTTATTACTTTAGATT 7 545 1 TTTTTTTTAT 0.877015 -56 CCTTATTCTTTTTTTATATTTTTATTT 8 6 1 TCTTTTTTTT 0.874452 -539 TTTATATTTTTATTTTTTTTATGTTTATTTTC 8 23 1 TTTTTTTTTT 0.953901 -522 GCCGCTGAAGTATGTTTTTTTTTACCTTTCTT 8 72 0 TTGTTTTTTT 0.9443 -473 TTGGGATATTTATGTCTTTACTTAGGTTTTTT 8 150 0 TTGTCTTTAT 0.933258 -395 AAAACTCCTCTTTGTCTTTTCTGTGTTATTGA 8 191 1 TTGTCTTTTT 0.975947 -354 TTCGTTTTAATTTTTTTTTTCTTCAGATACAA 8 399 0 TTTTTTTTTT 0.953901 -146 * ******** * Masking position 8 Map Score: 28.1035 Number of sites scoring better than the average of aligned sites = 10473 Number in coding regions = 2276 Number in noncoding regions = 8197 Number of orfs with sites within 600 bp upstream = 2284 Fraction of orfs with sites within 600 bp upstream = 0.366849 Motif number 2 TCGTGTCTTTTTCCTAACGTATATTTGCTTTGTTTCTTCA 1 142 1 TTCGTATCTT 0.988241 -159 TTATTTAGCTTTCCACTACCTTTCTTCCTTTGTGTGTATA 1 263 0 TTCCTTTCTT 0.716736 -38 TTTATTTATTTTCTCTCTGTGTAGTGACAATTTTTTTTTA 2 47 1 TTCGTATCAA 0.898577 -257 AGATAAAGAATTCATAAAGTATAATCTCCATGAGACTTCC 3 245 0 TTCGTATCCA 0.933567 -355 TCGACTCAACTTCAATCCGTTTTCTTTCTTCTTATTGCGC 3 562 0 TTCGTTTCTT 0.977236 -38 TAACCTCGCTTTTTCAAAGACTATCTCCATTCTATTCTTC 4 56 0 TTTGTACCAT 0.632653 -530 ATTTCAATGATTCCCATTGTATTGCCTCTTCCCATTGTGG 4 216 1 TTCGTTCCTT 0.935874 -370 TGAAATGCAGTTCGCCATGGTTAATATCTTTTCCTAATTT 4 322 1 TTCGTATCTT 0.988241 -264 AATTCTCCTCTTGTGGCAGTATTGTTTCATGCTTTTGCTT 4 413 0 TTGGTTTCAT 0.757579 -173 CAGCCAAACGTTCATTCAGATTAGTTACTATCTTGGAATA 4 501 1 TTCGTATCTA 0.964739 -85 TTTTCTATTGTTCTTACTGTATATGTTATTTTGTTTTCCT 4 549 0 TTCGTAGATT 0.531865 -37 AGAAATGTTGTTCCAGAAGTTTATTCTCTTGAACCTTTAC 5 254 0 TTCGTATCTT 0.988241 -47 CCGTTTGTCGTTGATAACGAGTTTCCACCTTATCACTTAT 6 87 0 TTGGTTCCCT 0.627578 -214 ATCCTACCTTTTCTTCTTGCGTACGTGCCTCTCAATGCGT 6 256 0 TTCGTAGCCT 0.9362 -45 CATCGGCACCTTCCTGGGGATTAATTCCTTACAAGCGCTG 7 106 0 TTCGTATCTT 0.988241 -495 TTGTATCTCTTTGGTTCGGAGTATTTCCTTCTTTCTTTTC 7 166 1 TTGGTATCTT 0.94973 -435 TAACAACCTTTTTGAAGCGCGTATTTACCACCGGCAAAAG 7 375 1 TTTGTATCCA 0.723457 -226 TATTTTTATTTTTTTTATGTTTATTTTCTATTACTGATTT 8 27 1 TTTGTATCTA 0.835888 -518 CTTGTATACTTTCTCTGAGTGCATTTACTTAAATATGGTT 8 109 0 TTCGCATCTT 0.889305 -436 TATTTATGTCTTTACTTAGGTTTTTTACTTGTATACTTTC 8 136 0 TTTGTTTCTT 0.888787 -409 TTTTGGTATATTCGGTTAGTTTTGGCCCATATTTGTTAAA 8 312 0 TTCGTTGCAT 0.825353 -233 *** * ** * *** Masking position 2 Map Score: 14.1088 Number of sites scoring better than the average of aligned sites = 1471 Number in coding regions = 1104 Number in noncoding regions = 367 Number of orfs with sites within 600 bp upstream = 332 Fraction of orfs with sites within 600 bp upstream = 0.0533248 Motif number 3 AATTAGTATTTAATTTTACTTTGACTTTATT 1 188 0 TAATTTACTT 0.829771 -113 TGTGATTCTTTATATTTATTTATTTTCTCTC 2 33 1 TATTTTATTT 0.95716 -271 TCATGTTAAATATATTTATTTTAAGAAGCCG 2 92 1 TATTTTATTT 0.95716 -212 TTTATAATTTTAATTTTAGTTATTGATTTCA 2 143 0 TAATTTAGTT 0.899705 -161 TTATTTGAATGATATTTAGTTGGATATAATC 2 227 0 GATTTTAGTT 0.850434 -77 GGTTGACGAAGTTTATTTTGGAGCTTGA 3 8 1 GAATTTATTT 0.950016 -592 TTATAATTCTGAAGTTTATTCAGAAAATATC 3 322 0 GAATTTATTC 0.857237 -278 ACACCCTGTTTAACTTTATTTGTCACCTTTT 4 119 0 TAATTTATTT 0.962803 -467 TGTTGTTCCAGAAGTTTATTCTCTTGAACCT 5 258 0 GAATTTATTC 0.857237 -43 TCTTTTTTTATATTTTTATTTTTTTTATGTT 8 17 1 TATTTTATTT 0.95716 -528 TTATTTTTTTTATGTTTATTTTCTATTACTG 8 32 1 TATTTTATTT 0.95716 -513 GCCGCTGAAGTATGTTTTTTTTTACCTTTCT 8 73 0 TATTTTTTTT 0.820254 -472 TTCTTCGTTTTAATTTTTTTTTTCTTCAGAT 8 403 0 TAATTTTTTT 0.840932 -142 *** ******* Masking position 2 Map Score: 7.94291 Number of sites scoring better than the average of aligned sites = 824 Number in coding regions = 387 Number in noncoding regions = 437 Number of orfs with sites within 600 bp upstream = 278 Fraction of orfs with sites within 600 bp upstream = 0.0446515 Motif number 4 CGAGAACATTATTAGATTTCC 1 1 0 ATAGATTTCC 0.980584 -300 GTGTATAATCAATAGATTTTCGCTAAATTTC 1 239 0 ATAGATTTTC 0.962555 -62 TTCCTTGGGTAGTAGACTTTCTTTTACGTTA 2 179 0 ATAGACTTTC 0.961824 -125 CACTAAATAAAGTAGATTTTCCTTGGGTAGT 2 197 0 ATAGATTTTC 0.962555 -107 TATAATCTCCATGAGACTTCCAGGACAAATA 3 235 0 AGAGACTTCC 0.984552 -365 CATTTGTTCCATGATATTTTCTGAATAAACT 3 310 1 AGATATTTTC 0.787037 -290 ACTCCTAATTAATACATTTCCGTGCAAAGGT 3 471 0 ATACATTTCC 0.893149 -129 AGACACTTTTATGAGACTTCCTTTTTGTCGG 3 519 0 AGAGACTTCC 0.984552 -81 CTGCCACAAGAGGAGAATTCCTCCTTTTGAA 4 434 1 AGAGAATTCC 0.941318 -152 * ********* Masking position 6 Map Score: 5.4695 Number of sites scoring better than the average of aligned sites = 229 Number in coding regions = 187 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 5 AATTATTCTTAAAAGGGAAGATGCGAAATT 1 215 1 AAAAGGGAAG 0.982851 -86 GATTATACACACAAAGGAAGAAAGGTAGTG 1 260 1 ACAAAGGAAG 0.916583 -41 ACTATGCTGAAAAAATGAAG 2 1 0 AAAAATGAAG 0.898109 -303 TTCAATGAAACAAAAGGAAACTGACGGCTT 2 117 0 CAAAAGGAAA 0.953113 -187 TTGCCAAGTGAAAAGGGAAACCTAAATACA 3 44 0 AAAAGGGAAA 0.957938 -556 AGCCGCCGACAAAAAGGAAGTCTCATAAAA 3 514 1 AAAAAGGAAG 0.985849 -86 GAACAAAAGAAAAAGGGAAGAATAGAATGG 4 40 1 AAAAGGGAAG 0.982851 -546 CTTTTTTCCACAATGGGAAGAGGCAATACA 4 233 0 CAATGGGAAG 0.817467 -353 ATTAGGAGAAAAAAAGGAAAGATGCCCTGT 4 374 0 AAAAAGGAAA 0.965137 -212 CTTTAGACTTCAAAAGGAGGAATTCTCCTC 4 443 0 CAAAAGGAGG 0.889728 -143 CAAGCGCTGAAAAAATGAAGAGATGATTCC 7 85 0 AAAAATGAAG 0.898109 -516 AAAGAAAAGAAAGAAGGAAATACTCCGAAC 7 179 0 AAGAAGGAAA 0.813654 -422 TGGCTATTCACAAACGGAAAAATCTAAAGT 7 567 0 CAAACGGAAA 0.826073 -34 ********** Masking position 8 Map Score: 12.9999 Number of sites scoring better than the average of aligned sites = 2182 Number in coding regions = 1278 Number in noncoding regions = 904 Number of orfs with sites within 600 bp upstream = 746 Fraction of orfs with sites within 600 bp upstream = 0.11982 Motif number 6 GTACTAAGGGCATTTTATCAGAGCACCCATT 1 71 0 CATTTTATCG 0.932022 -230 CTTCATTTTTTCAGCATAGTTATG 2 4 1 CATTTTTTCG 0.932022 -300 AAGTTTGAAACCTTTTGTCAGCAACGAGTAA 3 74 0 CCTTTTGTCG 0.987306 -526 CGCTGAAGTGCCTTCTGCCCGGAGATAAAGA 3 276 0 CCTTCTGCCG 0.936339 -324 ATGAGACTTCCTTTTTGTCGGCGGCTATTTC 3 509 0 CTTTTTGTCG 0.909814 -91 TTATTTGTCACCTTTTTGCTGGTATTTTTTA 4 104 0 CCTTTTTGCG 0.939848 -482 GGAATTCTCCTCTTGTGGCAGTATTGTTTCA 4 424 0 TCTTGTGGCG 0.808616 -162 TATCTCGCTGCATTGTGGCGGCA 6 3 0 CATTGTGGCG 0.975656 -298 ATCATCTCTTCATTTTTTCAGCGCTTGTAAG 7 88 1 CATTTTTTCG 0.932022 -513 GACACAATGGCCTTTTGCCGGTGGTAAATAC 7 395 0 CCTTTTGCCG 0.982262 -206 GGCAAAAGGCCATTGTGTCACATAAAAAAAA 7 407 1 CATTGTGTCC 0.846036 -194 AGAGCTAGGACATTGTACCTGAAATGGTGCT 8 239 0 CATTGTACCG 0.918754 -306 CCAGAAGAAACCTTGTATCTGAAGAAAAAAA 8 387 1 CCTTGTATCG 0.962151 -158 ********* * Masking position 6 Map Score: 9.18611 Number of sites scoring better than the average of aligned sites = 574 Number in coding regions = 425 Number in noncoding regions = 149 Number of orfs with sites within 600 bp upstream = 123 Fraction of orfs with sites within 600 bp upstream = 0.0197559 Motif number 7 CTAAAATTAAAATTATAAAAGGAATAACGTA 2 155 1 AATTTAAAAG 0.649231 -149 AGTAATTGCCAAGTGAAAAGGGAAACCTAAA 3 48 0 AAGTAAAAGG 0.982945 -552 TGAAAAAGCGAGGTTAAAAGCGACTAAAAAA 4 80 1 AGGTAAAAGC 0.94884 -506 TGCAAACCCTAATTTAAAAGGGTTACAGAAA 4 277 1 AATTAAAAGG 0.934533 -309 CCTCCTTTTGAAGTCTAAAGCGCCATTTCAA 4 453 1 AAGTTAAAGC 0.976 -133 AAATACGAAATAGTGTAAAGGTTCAAGAGAA 5 240 1 TAGTTAAAGG 0.860387 -61 CACTAGTGATAAGTGATAAGGTGGAAACTCG 6 79 1 AAGTATAAGG 0.879854 -222 TGGGGTAATAAGGTTAAAAGCCATTGTTGAA 7 50 1 AGGTAAAAGC 0.94884 -551 CTACACCGCCAAGTATAAAGCTTTTCCCAAC 7 299 0 AAGTTAAAGC 0.976 -302 GCGGTGTAGTAATTGTAAAGGATCAAGATTG 7 321 1 AATTTAAAGG 0.92316 -280 GAAAGTATACAAGTAAAAAACCTAAGTAAAG 8 136 1 AAGTAAAAAC 0.881584 -409 **** ****** Masking position 8 Map Score: 4.54354 Number of sites scoring better than the average of aligned sites = 463 Number in coding regions = 311 Number in noncoding regions = 152 Number of orfs with sites within 600 bp upstream = 128 Fraction of orfs with sites within 600 bp upstream = 0.0205589 Motif number 8 TATTTCTCAATATACTCCTAATTAATACATTT 3 483 0 TTATCCTAAT 0.86824 -117 TCTTTCTTCTTATTGCGCTAATTGTCTGTTAG 3 548 0 TTTCGCTAAT 0.907217 -52 ATGGTTAATATCTTTTCCTAATTTGGAAATAT 4 338 1 TTTTCCTAAT 0.969457 -248 TCTTTCCTTTTTTTCTCCTAATGAAAATTGTA 4 382 1 TTTTCCTAAT 0.969457 -204 TATGTTATTTTGTTTTCCTACTAGAAGTATTC 4 536 0 TTTTCCTACT 0.868756 -50 TCGCGTCACATTTTTTGCCAATAAATAAATAC 5 119 0 TTTTGCCAAT 0.916359 -182 GTGCCTATAATGTCCTGCTAATTTCCCACTAA 6 200 0 TTCTGCTAAT 0.974797 -101 TCTTTGTAGTTTTTATGCAAATGCAGGGAACA 7 204 1 TTTTGCAAAT 0.880838 -397 ATCAAGATTGTGTCATGCTAATGTGCCGCTGT 7 342 1 TTCTGCTAAT 0.974797 -259 TCTGGACAGAGTTCATGCTAATAAACAAAGGA 8 360 0 GTCTGCTAAT 0.889699 -185 * ** ******* Masking position 3 Map Score: 2.19542 Number of sites scoring better than the average of aligned sites = 220 Number in coding regions = 133 Number in noncoding regions = 87 Number of orfs with sites within 600 bp upstream = 64 Fraction of orfs with sites within 600 bp upstream = 0.0102795 Motif number 9 AAGATCGGTCTTCTCTGTTCGTGTCTTTTT 1 124 1 TTCTCTGTTC 0.985763 -177 ATTTCGCATCTTCCCTTTTAAGAATAATTA 1 214 0 TTCCCTTTTA 0.897277 -87 GTATTTAGGTTTCCCTTTTCACTTGGCAAT 3 45 1 TTCCCTTTTC 0.918339 -555 GGTGCTTTTTTTTTCTGTTCAAAAAACCAA 3 112 1 TTTTCTGTTC 0.885476 -488 ATTGCGCTAATTGTCTGTTAGACACTTTTA 3 539 0 TTGTCTGTTA 0.898999 -61 TGATATAGCTTACCCTGTTAACGCGTGAAA 5 189 1 TACCCTGTTA 0.933404 -112 CTTAACCGGGTACTCTGTTCCCTGCATTTG 7 221 0 TACTCTGTTC 0.956293 -380 CTGATAAACCTTCTCTGTTAACACTATTAT 7 528 1 TTCTCTGTTA 0.981745 -73 TCTTTGTCTTTTCTGTGTTATTGACAGTAG 8 199 1 TTCTGTGTTA 0.886546 -346 ********** Masking position 6 Map Score: 4.12968 Number of sites scoring better than the average of aligned sites = 609 Number in coding regions = 397 Number in noncoding regions = 212 Number of orfs with sites within 600 bp upstream = 180 Fraction of orfs with sites within 600 bp upstream = 0.028911 Motif number 10 TATTTGCTTTGTTTCTTCACTCAACAATAA 1 163 1 GTTTCTTCAC 0.876547 -138 GACCTCCTTTATTTAGCTTTCCACTA 1 285 0 CTTTATTTAG 0.824685 -16 GGAAAATCTACTTTATTTAGTGATTATATC 2 206 1 CTTTATTTAG 0.824685 -98 GGTTGACGAAGTTTATTTTGGAGCTTGATC 3 11 1 GTTTATTTTG 0.943035 -589 TAATTCTGAAGTTTATTCAGAAAATATCAT 3 320 0 GTTTATTCAG 0.94338 -280 AATCCGTTTTCTTTCTTCTTATTGCGCTAA 3 559 0 CTTTCTTCTT 0.686544 -41 ATTCTTCCCTTTTTCTTTTGTTCATTTGCA 4 33 0 TTTTCTTTTG 0.723541 -553 TCAGCCAAACGTTCATTCAGATTAGTTACT 4 500 1 GTTCATTCAG 0.806239 -86 TGTTCCAGAAGTTTATTCTCTTGAACCTTT 5 256 0 GTTTATTCTC 0.91793 -45 CGTTATGTTTGTGTCTTTTGTTCAACCCAA 6 147 0 GTGTCTTTTG 0.691581 -154 TTAAATGGGCCTTAATTCTGTAGACACTCT 7 18 1 CTTAATTCTG 0.58205 -583 GTATTTCCTTCTTTCTTTTCTTTGTAGTTT 7 186 1 CTTTCTTTTC 0.782247 -415 CCAAAGCCAGGTTCATTTTGCATAAGATTC 7 445 1 GTTCATTTTG 0.805208 -156 TTTTTTTTATGTTTATTTTCTATTACTGAT 8 35 1 GTTTATTTTC 0.861088 -510 CAGATACAAGGTTTCTTCTGGACAGAGTTC 8 378 0 GTTTCTTCTG 0.971419 -167 TTAATTTTTTTTTTCTTCAGATACAAGGTT 8 395 0 TTTTCTTCAG 0.724869 -150 AACTGAATCAGTTTATTCTTCGTTTTAATT 8 419 0 GTTTATTCTT 0.790768 -126 ********** Masking position 6 Map Score: 5.58502 Number of sites scoring better than the average of aligned sites = 3191 Number in coding regions = 2391 Number in noncoding regions = 800 Number of orfs with sites within 600 bp upstream = 619 Fraction of orfs with sites within 600 bp upstream = 0.0994218 Motif number 11 TTCCTTTTTGTCGGCGGCTATTTCTCAATA 3 503 0 TCGGCGGCTA 0.968693 -97 GCGTGAAAAGTGGGCGGCTAAAACCGAGAA 5 211 1 TGGGCGGCTA 0.916381 -90 CACGACGCATTGAGAGGCACGTACGCAAGA 6 252 1 TGAGAGGCAC 0.918506 -49 TTCTCTCATTACATCGGCACCTTCCTGGGG 7 127 0 ACATCGGCAC 0.9065 -474 AGGCTGTTAGTCAGCCGCACTCTACACAAA 7 249 1 TCAGCCGCAC 0.958423 -352 AGGTTGTTACACAGCGGCACATTAGCATGA 7 354 0 ACAGCGGCAC 0.988613 -247 AAAACATACTTCAGCGGCTATACAACCATA 8 86 1 TCAGCGGCTA 0.982057 -459 AAAATCCTTGACAGAGGCAAAGTTTAGTTC 8 452 1 ACAGAGGCAA 0.926033 -93 ********** Masking position 7 Map Score: 1.40562 Number of sites scoring better than the average of aligned sites = 796 Number in coding regions = 595 Number in noncoding regions = 201 Number of orfs with sites within 600 bp upstream = 176 Fraction of orfs with sites within 600 bp upstream = 0.0282686 Motif number 12 AGGCTCAATCCTCACTTTCTCGCGTCAATTG 3 139 0 CTCACTTTTC 0.831799 -461 TCTTAAAGCGCTTGCTTTAGTAGTATTGCAT 3 199 0 CTTGCTTTGT 0.945768 -401 CTTTTGTTCATTTGCATTCGCATCGTTATAG 4 18 0 TTTGCATTGC 0.688768 -568 CGCTTTTAACCTCGCTTTTTCAAAGACTATC 4 71 0 CTCGCTTTTC 0.9523 -515 GCATTTCAGACCTGCTTTTTTTTTTCTGTAA 4 299 0 CCTGCTTTTT 0.678614 -287 AGTATTGTTTCATGCTTTTGCTTACAATTTT 4 405 0 CATGCTTTGC 0.972805 -181 TACTCTGTTCCCTGCATTTGCATAAAAACTA 7 210 0 CCTGCATTGC 0.932106 -391 CAAAATGAACCTGGCTTTGGCGGGAGTTTTT 7 434 0 CTGGCTTTGC 0.96781 -167 CAGTAATTTGCTCGCTTTAGCTACTGATAAA 7 505 1 CTCGCTTTGC 0.987745 -96 TAAAAAAAAACATACTTCAGCGGCTATACAA 8 80 1 CATACTTCGC 0.625278 -465 AAGAGTTTAACTTACTTTGGCCTCCCTAATA 8 275 0 CTTACTTTGC 0.965564 -270 ******** ** Masking position 7 Map Score: 1.97457 Number of sites scoring better than the average of aligned sites = 1044 Number in coding regions = 748 Number in noncoding regions = 296 Number of orfs with sites within 600 bp upstream = 247 Fraction of orfs with sites within 600 bp upstream = 0.0396723 Motif number 13 ********** No masking Map Score: -1.01583e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -1.01583e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -1.01583e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0