AlignACE version 2.2 July 7, 1998 AlignACE -jTAF.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YBR198C 385 bp YBR198C TAF90 1-2397 Probable transcription-associated factor protein, probable -transducin type #2 YDR145W 600 bp YDR145W TAF61 1-1620 TFIID subunit #3 YDR167W 300 bp YDR167W TAF25 1-621 TFIID subunit #4 YGL112C 300 bp YGL112C TAF60 1-1551 TATA-binding protein-associated-factor #5 YGR274C 300 bp YGR274C TAF145 1-3201 Component of the TAFII complex required for activated transcription #6 YML098W 300 bp YML098W TAF19 1-504 TFIID subunit #7 YML015C 300 bp YML015C TAF40 1-1041 TFIID subunit #8 YMR227C 300 bp YMR227C TAF67 1-1773 TFIID subunit #9 YMR236W 300 bp YMR236W TAF17 1-474 TFIID subunit #10 YPL011C 314 bp YPL011C TAF47 1-1062 Component of the TAF(II) complex (TBP-associated protein complex) Motif number 1 TCTTATTTTTCAAGTATCTCAACTTGAACCCGGAG 1 361 0 TTTTCTTCTT 0.923981 -25 CGACAAAAGCTTGTTCTCTCGTTGATACTTTTAGCCAATT 2 25 1 TTTTCTGCTT 0.692224 -576 TCGAGAAAGTTTATTTGGCAGTTTTCTTTTAAAGTTTTGA 2 164 0 TTTTTTTTTT 0.974304 -437 CGCGTTTTTTTTTTTTTGAAGTTGAAATTTCAGCTACGCA 2 204 0 TTTTTTGTTT 0.87525 -397 AAAGCTGTCATGAATCAAGATTGTACATTTATATACCATA 2 357 0 TGATCTTTTT 0.607644 -244 GGTACCAAACTTTTTTTCGCTACTTTATTTCAACAGAAAC 3 84 1 TTTTTATTTT 0.872681 -217 TGCAGCTTCTTTAATTTTTCGTTTCTGTTTTCAACTTGAA 3 203 0 TTATTTTTTT 0.827095 -98 AGTTTCAGTTATTCTTTCCTCTGTTCTTCGCTGCCAGT 3 273 0 TTTTCTTCTT 0.923981 -28 CTTTACAAAATTTTTCAGCTTTATTTTATTACCAAAAAAA 4 145 1 TTTTCTTATT 0.925376 -156 TTGTTATTGATGGTTTCCGGGTATTTTTTTGGTAATAAAA 4 168 0 TGTTTTTTTT 0.9374 -133 ACGTAGCTCTTTCTTTCCAACATTAGGTTTTATCGCCTTG 5 149 1 TTTTTATTTT 0.872681 -152 TTCGCGGCGATGGTTTTCAAATGTGCTTTTAAGAGAATAA 5 218 1 TGTTTTTTTT 0.9374 -83 CCTGTTGTACTTCTTTTTCTCTCTGTGTTTAAAATGCTAT 5 258 0 TTTTTTTTTT 0.974304 -43 GCAAGGTGTATTTTTTTTTCATTTATTTTTGAGTTCTAGC 6 169 1 TTTTTTTTTT 0.974304 -132 CATTACCGAATTTTTTCTCTTATTCCCATTTCTTCGACTG 7 171 1 TTTTTATATT 0.732227 -130 AAGCTCAAACTTACTTTGTGCTCTTCATTTATATGGATAA 7 258 0 TTCTTTTTTT 0.80082 -43 GTTCTTCCTATTCTTCTCGCTTTTATTATTTTTGCTAGCA 8 215 0 TTTTCTTATT 0.925376 -86 ATTCTACTTTTGATTTAAAGCTCTTAGTTTGGTCATGGAA 9 214 0 TGTTTTTTTT 0.9374 -87 TGTTGTCGTGTTGTTTCATAATGTCAAATTCTACTTTTGA 9 241 0 TTTTTTTATT 0.93799 -60 TAGACAGAAGTTCTTTAGGCATTTAGGTTTTGTTTGTGAG 10 52 0 TTTTTTTTTT 0.974304 -263 TTTAGTTTTTTTTTTCAGTAATTTCATATTGCATGATGAA 10 186 1 TTTTCTTATT 0.925376 -129 ** *** * * *** Masking position 5 Map Score: 16.352 Number of sites scoring better than the average of aligned sites = 6506 Number in coding regions = 2106 Number in noncoding regions = 4400 Number of orfs with sites within 600 bp upstream = 1718 Fraction of orfs with sites within 600 bp upstream = 0.27594 Motif number 2 CCTGCTTTATTGCTCTTTCTGCCACTTTGTAGACTTC 1 284 0 TCTTGCACTT 0.992582 -102 TCTCTTTTCCTACCCTTATGCCTGCTTTATTGCTCTT 1 304 0 TCCTCCGCTT 0.971509 -82 AAACTCCGGGTTCAAGTTGAGATACTTGAAAAATAAG 1 358 1 TCATGAACTT 0.745605 -28 ATGCCCATTATTCATTTGCTCCGACTTAAGTCTAACA 2 478 0 TCATCCACTT 0.950075 -123 GAAACTTCTTTCCTAGTTTAGCAGCTTTAACGCAGCT 3 119 1 TCTTGCGCTT 0.99359 -182 TAGGCATGAATGCTGAATCTGCAGCTTCTTTAATTTT 3 225 0 TCTAGCGCTT 0.951681 -76 GCTCATGAACTACTTTTGCTGCTACTTGAATCGGTGT 4 208 0 TCTTGCACTT 0.992582 -93 CATACTCCTGTTCTTTTTCAGCCGCTTGGTTTATCTC 7 76 1 TCTTGCGCTT 0.99359 -225 ACCGAATTTTTTCTCTTATTCCCATTTCTTCGACTGA 7 175 1 TCTTCCATTT 0.830854 -126 ATGTAGTTCTTCCTATTCTTCTCGCTTTTATTATTTT 8 223 0 TCTTCTGCTT 0.862041 -78 ATCGCGAGCTTACCCGTTTCGCCACTTCTGTCAAGTG 10 147 0 TCCTGCACTT 0.982917 -168 GATTTGGAATTGCTCAGGAAGCTACTTCAAGTGTTAT 10 237 0 TCTGGCACTT 0.961832 -78 * ** * ** **** Masking position 16 Map Score: 8.56359 Number of sites scoring better than the average of aligned sites = 619 Number in coding regions = 489 Number in noncoding regions = 130 Number of orfs with sites within 600 bp upstream = 117 Fraction of orfs with sites within 600 bp upstream = 0.0187922 Motif number 3 ATCTTGAAACTTTTTTGCTTTTGAACAATTCAT 1 244 0 TTTTTGCTTG 0.989223 -142 TTATGCCTGCTTTATTGCTCTTTCTGCCACTTT 1 293 0 TTTTTGCTTT 0.848193 -93 TTACACGCGTTTTTTTTTTTTTGAAGTTGAAAT 2 216 0 TTTTTTTTTG 0.791091 -385 GCAGCTTATTTTTGTTACTTTAGTTGAATAGTA 3 150 1 TTTTTACTTG 0.963482 -151 CTGCCAGTTCTTTTTAGCTTAGGCATGAATGCT 3 248 0 TTTTAGCTAG 0.878054 -53 TGAATCGGTGTTTGTTATTGATGGTTTCCGGGT 4 186 0 TTTTTATTAG 0.838924 -115 TTAAAGCCAATCTATTGTTTTCGCTCATGAACT 4 234 0 TCTTTGTTTG 0.952258 -67 GCCAATAAGGTTTCTTACTATGGCAACCCTACG 5 71 0 TTTTTACTTG 0.963482 -230 ATTTTCTCTATCTCTTGCTGACGTAGCTCTTTC 5 129 1 TCTTTGCTAG 0.946403 -172 CTCTTTTAGATTTGATGCTTTAGTGGGCAATAG 6 127 0 TTTATGCTTG 0.900338 -174 TCTTCTCGCTTTTATTATTTTTGCTAGCAAGTT 8 211 0 TTTTTATTTG 0.925699 -90 GGTAACACTGTCTCTTGTTTATGTAGTTCTTCC 8 247 0 TCTTTGTTAG 0.892914 -54 TCGAAACAGATTTTTAGCTATGGCTACCTTGCA 9 62 0 TTTTAGCTTG 0.945128 -239 CCTCTAGTCTTTTCTTGTTGTCGTGTTGTTTCA 9 263 0 TTTTTGTTTG 0.977449 -38 *** ***** * * Masking position 9 Map Score: 9.08477 Number of sites scoring better than the average of aligned sites = 2099 Number in coding regions = 1425 Number in noncoding regions = 674 Number of orfs with sites within 600 bp upstream = 538 Fraction of orfs with sites within 600 bp upstream = 0.0864118 Motif number 4 GTAGGAAAAGAGAAGGAGAAAAGATACGAGAA 1 328 1 AAGGAGAAAA 0.986339 -58 TGTTGAAATAAAGTAGCGAAAAAAAGTTTGGT 3 87 0 AGAGCGAAAA 0.870044 -214 AATGAACATAATACAGAGAAAATTTAACCATA 4 86 0 AAAGAGAAAA 0.985216 -215 CGTCAGCAAGAGATAGAGAAAATGGACCCACA 5 120 0 AAAGAGAAAA 0.985216 -181 TTATTAATGAACAAGGCGATAAAACCTAATGT 5 168 0 AAGGCGATAA 0.933586 -133 CATTTTAAACACAGAGAGAAAAAGAAGTACAA 5 262 1 AAAGAGAAAA 0.985216 -39 TTAAGAACCAACATGGAGATAAACCAAGCGGC 7 96 0 AAGGAGATAA 0.970319 -205 AAGAAATGGGAATAAGAGAAAAAATTCGGTAA 7 173 0 ATAGAGAAAA 0.913084 -128 AAGAAGAGGTATATAGAGATAATTATCCATAT 7 236 1 AAAGAGATAA 0.967923 -65 GCCTTCCCAGAGATGGAGTAAACTTGTTCTTC 9 11 1 AAGGAGTAAA 0.910387 -290 * * ******** Masking position 11 Map Score: 8.68114 Number of sites scoring better than the average of aligned sites = 573 Number in coding regions = 308 Number in noncoding regions = 265 Number of orfs with sites within 600 bp upstream = 226 Fraction of orfs with sites within 600 bp upstream = 0.0362994 Motif number 5 GTGAAATATTTTGAACCATTTGATATGCAGA 1 111 0 TTGAACCTTT 0.976433 -275 ATTTGAAATCTTGAAACTTTTTTGCTTTTGA 1 253 0 TTGAAACTTT 0.984019 -133 TGTTCTCTCGTTGATACTTTTAGCCAATTAC 2 36 1 TTGATACTTT 0.97929 -565 TTTTAAAGTTTTGAACCTGTTTCAATACCTT 2 147 0 TTGAACCGTT 0.927267 -454 TGATATTCATTTGATACGTTTACTTGCAAAG 2 393 0 TTGATACTTT 0.97929 -208 CGTCGCCAATTTGAAACCTATCCATGGTACC 3 59 1 TTGAAACTAT 0.927446 -242 ATAGTAGGAGTTGATACTTTTGTTTTTTCAA 3 177 1 TTGATACTTT 0.97929 -124 ******* *** Masking position 4 Map Score: 4.23352 Number of sites scoring better than the average of aligned sites = 398 Number in coding regions = 289 Number in noncoding regions = 109 Number of orfs with sites within 600 bp upstream = 108 Fraction of orfs with sites within 600 bp upstream = 0.0173466 Motif number 6 ATCTTTTCTCCTTCTCTTTTCCTACCCTTAT 1 322 0 CTTCCTTTTC 0.966961 -64 GATTCATACACATCGTTTTGCACGTAGAAAG 2 249 0 CATCTTTTGC 0.862595 -352 CGAGCAACTACTTCGTTTTTATCAGTTGAAG 3 30 0 CTTCTTTTTA 0.920054 -271 CGAGATTGGGCATCGCTTTACAAAATTTTTC 4 130 1 CATCCTTTAC 0.871045 -171 GCGTCCTTTGCTTCCTTTTTAAAGCCAATCT 4 254 0 CTTCTTTTTA 0.920054 -47 TTGCGAAAAGCATCTCTTTTAGATTTGATGC 6 142 0 CATCCTTTTA 0.964118 -159 GTTGATGAACCTTCTTTGTTATCAATGACTC 6 225 0 CTTCTTGTTA 0.904695 -76 TTCGAGACCTCATCTCTGTTCAGTTCATTAC 7 146 1 CATCCTGTTC 0.972484 -155 TGTAAAGTTTCATCTCTATTATCATCATACA 8 127 1 CATCCTATTA 0.847982 -174 GAGTACTGTGCATCATTGTTCCAGG 10 5 0 CATCTTGTTC 0.956826 -310 **** ****** Masking position 7 Map Score: 4.02883 Number of sites scoring better than the average of aligned sites = 902 Number in coding regions = 598 Number in noncoding regions = 304 Number of orfs with sites within 600 bp upstream = 258 Fraction of orfs with sites within 600 bp upstream = 0.0414391 Motif number 7 AACCCGGAGTTTCTCGTATCTTTTCTCCTTCTCTT 1 335 0 TCTATTTTTC 0.860593 -51 CGTAGAAAGTTACACGCGTTTTTTTTTTTTTGAAG 2 223 0 TCAGTTTTTT 0.961923 -378 TAGGAGTTGATACTTTTGTTTTTTCAAGTTGAAAA 3 181 1 TCTGTTTTTC 0.975652 -120 AGTTTCAGTTATTCTTTCCTCTGTTCTT 3 283 0 TCAATCTTTC 0.830062 -18 GGCGATGGTTTTCAAATGTGCTTTTAAGAGAATAA 5 223 1 TCAGTCTTTT 0.971348 -78 CGCCTTATACTCCTGTTGTACTTCTTTTTCTCTCT 5 274 0 TCTGTCTTCT 0.915458 -27 TTTGTGAACATACTCCTGTTCTTTTTCAGCCGCTT 7 68 1 TCTGTCTTTT 0.982906 -233 GATATCTCCAAACTTAAGTTCTTTTATGGTTTC 8 9 0 ACTGTCTTTT 0.879605 -292 GTCTGTGAAGTCCTCTAGTCTTTTCTTGTTGTCGT 9 272 0 TCTGTTTTTC 0.975652 -29 GCCTAAACAATGCAAACGTGTTTTTTCACTTGACA 10 121 1 TCAGTTTTTT 0.961923 -194 AAGCTCGCGATGCTTTAGTTTTTTTTTTCAGTAAT 10 173 1 TCTGTTTTTT 0.977193 -142 * ** ** ***** Masking position 9 Map Score: 5.37431 Number of sites scoring better than the average of aligned sites = 840 Number in coding regions = 523 Number in noncoding regions = 317 Number of orfs with sites within 600 bp upstream = 270 Fraction of orfs with sites within 600 bp upstream = 0.0433665 Motif number 8 ACAAAGTGGCAGAAAGAGCAATAAAGCAGG 1 291 1 AGAAAGAGCA 0.893459 -95 ATTGTTGAATATGAAGAGCACCTTATGGTA 2 334 1 ATGAAGAGCA 0.97009 -267 TTTCAAATTGGCGACGAGCAACTACTTCGT 3 45 0 GCGACGAGCA 0.955923 -256 AGAACTGGCAGCGAAGAACAGAGGAAAGAA 3 270 1 GCGAAGAACA 0.967043 -31 CTAAAAAAATGGGAAGGGCAAAGACGTTTA 6 30 0 GGGAAGGGCA 0.96047 -271 AATACACCTTGCGAAAAGCATCTCTTTTAG 6 151 0 GCGAAAAGCA 0.900848 -150 ATCCATATAAATGAAGAGCACAAAGTAAGT 7 260 1 ATGAAGAGCA 0.97009 -41 CGAGAAGAATAGGAAGAACTACATAAACAA 8 236 1 AGGAAGAACT 0.792136 -65 CCTCAGCACGAGGAAGAACAAGTTTACTCC 9 25 0 AGGAAGAACA 0.964391 -276 GTGCTGAGGAACGAAGTGCAAGGTAGCCAT 9 46 1 ACGAAGTGCA 0.938009 -255 ********** Masking position 4 Map Score: 4.39516 Number of sites scoring better than the average of aligned sites = 1099 Number in coding regions = 830 Number in noncoding regions = 269 Number of orfs with sites within 600 bp upstream = 241 Fraction of orfs with sites within 600 bp upstream = 0.0387086 Motif number 9 TTGAACAATTCATCTGAACCCGTAAAAGATGATAT 1 222 0 CACTCCGTAA 0.984323 -164 TCAAGTATCTCAACTTGAACCCGGAGTTTCTCGTA 1 352 0 CACTACCGGA 0.916564 -34 TGATTCATGACAGCTTTGCAAGTAAACGTATCAAA 2 380 1 CACTCAGTAA 0.946571 -221 CCGGGTAATACAGCCAAAATCGTGATATTCATTTG 2 411 0 CACCACGTGA 0.979036 -190 TAAATAGGCCCAGCTTCGATCGTAAAATGAGGTTA 4 53 0 CACTACGTAA 0.988788 -248 CTTACTATGGCAACCCTACGAGTAAGGAATCATGG 5 56 0 CACCCAGTAA 0.896478 -245 GGCCTATATTCACCTTTTACCGTGATATTATGCCT 9 113 1 CACTACGTGA 0.98964 -188 AATTGTCCCACAACGTGCATAGTGACATGCATTCC 9 183 1 CACGAAGTGA 0.877409 -118 CGATATTCCACACCTTGTAGCCTAAACAATGCAAA 10 102 1 CACTACCTAA 0.959319 -213 AATTCCAAATCACCTACTAGCGGAAAACAGCGATA 10 263 1 CACTACGGAA 0.974306 -52 ** ** * ***** Masking position 2 Map Score: 2.90218 Number of sites scoring better than the average of aligned sites = 292 Number in coding regions = 218 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 67 Fraction of orfs with sites within 600 bp upstream = 0.0107613 Motif number 10 AGATGGTAGGAAATAAGGTATTGAAACAGGTTCA 2 133 1 AATAGGTTGA 0.977791 -468 ACACTGGCAAAGATTCGGTTATGATTCGAATGCT 2 560 0 AATCGGTAGA 0.985766 -41 TTCGATCGTAAAATGAGGTTACTAGTCAGCTGTG 4 40 0 AATAGGTATA 0.965055 -261 GAGCCAAGAAATAAAAGGTTAAGAACCAACATGG 7 112 0 AAAAGGTAGA 0.962777 -189 AACTGAACAGAGATGAGGTCTCGAAGAGCCAAGA 7 137 0 AATAGGTTGA 0.977798 -164 ATAAGAGAAAAAATTCGGTAATGAACTGAACAGA 7 160 0 AATCGGTAGA 0.985765 -141 TGAAAAATCAAGAAGAGGTATATAGAGATAATTA 7 227 1 AAAAGGTTTA 0.863057 -74 GAAACTTTACAAATGCGGTTACTACGTCAGTCAA 8 104 0 AATCGGTATA 0.964375 -197 * ** **** * ** Masking position 3 Map Score: 2.42629 Number of sites scoring better than the average of aligned sites = 174 Number in coding regions = 145 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 11 CAGATGAATTGTTCAAAAGCAAAAAAGTTT 1 241 1 GTTCAAAAGC 0.853086 -145 AGCAAAAGTAGTTCATGAGCGAAAACAATA 4 225 1 GTTCATGAGC 0.815054 -76 AACAAAGAAGGTTCATCAACAACTGCAACA 6 236 1 GTTCATCAAC 0.598074 -65 TAAGTTTGAGCTTCAACAGCGCAACG 7 285 1 CTTCAACAGC 0.914882 -16 AACAGACATAGTTGCTGAGCCTTCTTACTT 8 62 1 GTTGCTGAGC 0.927693 -239 CTTGCACTTCGTTCCTCAGCACGAGGAAGA 9 38 0 GTTCCTCAGC 0.99035 -263 CTTGAAGTAGCTTCCTGAGCAATTCCAAAT 10 243 1 CTTCCTGAGC 0.9723 -72 GGTCAATAGAGTTCCTCTGCT 10 304 1 GTTCCTCTGC 0.959288 -11 ********** Masking position 3 Map Score: 2.62065 Number of sites scoring better than the average of aligned sites = 523 Number in coding regions = 442 Number in noncoding regions = 81 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 12 GCCTATTGTATATTATACAGCCGTGCAACACC 1 70 1 TTTATCAGCC 0.979428 -316 TTAGAGAACGTCTTATAGAGCTCGTTCCGTTG 1 151 1 TTTATGAGCT 0.880682 -235 TTACAGCTACTTTTACCCGGCTAAGGGGAGAA 1 190 0 TTTACCGGCT 0.9588 -196 GTAAATATCATCTTTTACGGGTTCAGATGAAT 1 218 1 TTTTTCGGGT 0.883814 -168 ATTTTGGCTGTATTACCCGGGCAGTATACGCG 2 426 1 TTTACCGGGC 0.933005 -175 CCCTTCCCATTTTTTTAGGGCCATTCTTGCTG 6 42 1 TTTTTGGGCC 0.937286 -259 ATCTTATCCAGCTCACCCTCGCC 6 288 0 TTTATCAGCT 0.960368 -13 ATACTCCTGTTCTTTTTCAGCCGCTTGGTTTA 7 77 1 TTTTTCAGCC 0.9615 -224 ATAATATCGCTGTTATTCGGCCGATGAGAACA 8 158 1 TTTATCGGCC 0.989422 -143 * **** ***** Masking position 4 Map Score: 2.05292 Number of sites scoring better than the average of aligned sites = 474 Number in coding regions = 289 Number in noncoding regions = 185 Number of orfs with sites within 600 bp upstream = 141 Fraction of orfs with sites within 600 bp upstream = 0.022647 Motif number 13 AGTGATTATCTGAATAATGAAAGATGGTAG 2 112 1 TGAATAATGA 0.952325 -489 TCGGAGCAAATGAATAATGGGCATATATAG 2 491 1 TGAATAATGG 0.934328 -110 TTACTTTAGTTGAATAGTAGGAGTTGATAC 3 164 1 TGAATAGTAG 0.759985 -137 AGCTTAGGCATGAATGCTGAATCTGCAGCT 3 236 0 TGAATGCTGA 0.887838 -65 GTCAGCTGTGTGGATAGTGGATCCATAAAG 4 20 0 TGGATAGTGG 0.870086 -281 GTTCACAAAGTGTATAATGAGATAGCTCCG 7 47 0 TGTATAATGA 0.896829 -254 GCGATATTATTGTATGATGATAATAGAGAT 8 138 0 TGTATGATGA 0.90401 -163 GCGACTAATTTGAATGGTAACACTGTCTCT 8 265 0 TGAATGGTAA 0.828123 -36 TCCCACAACGTGCATAGTGACATGCATTCC 9 188 1 TGCATAGTGA 0.945388 -113 AATTTCATATTGCATGATGAAGGTATGCTA 10 205 1 TGCATGATGA 0.935764 -110 ********** Masking position 5 Map Score: 0.969915 Number of sites scoring better than the average of aligned sites = 1243 Number in coding regions = 968 Number in noncoding regions = 275 Number of orfs with sites within 600 bp upstream = 223 Fraction of orfs with sites within 600 bp upstream = 0.0358175 Motif number 14 AAACTCCGGGTTCAAGTTGAGATACTTGAAA 1 358 1 TTAAGTTGAG 0.888401 -28 TTTTTTTTTTTTGAAGTTGAAATTTCAGCTA 2 208 0 TTAAGTTGAA 0.960248 -393 ACTTCGTTTTTATCAGTTGAAGACTATTAAT 3 21 0 TACAGTTGAA 0.858445 -280 AGGAAAGAAGTTTCTGTTGAAATAAAGTAGC 3 102 0 TTCTGTTGAA 0.923987 -199 CTTTTGTTTTTTCAAGTTGAAAACAGAAACG 3 193 1 TTAAGTTGAA 0.658889 -108 CAAACACCGATTCAAGTAGCAGCAAAAGTAG 4 205 1 TTAAGTAGCA 0.871816 -96 CCTCGAAAATTTTAAGTTGCAGATATAATGG 6 81 0 TTAAGTTGCA 0.973947 -220 CCTTTTGGATTTCATGTTGCAGTTGTTGATG 6 249 0 TTATGTTGCA 0.922909 -52 TCTTTCAACTTTTCAGTCGAAGAAATGGGAA 7 193 0 TTCAGTCGAA 0.910841 -108 ** ******** Masking position 7 Map Score: 2.84142 Number of sites scoring better than the average of aligned sites = 286 Number in coding regions = 222 Number in noncoding regions = 64 Number of orfs with sites within 600 bp upstream = 63 Fraction of orfs with sites within 600 bp upstream = 0.0101189 Motif number 15 ********** No masking Map Score: 1.35246e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0