AlignACE version 2.2 July 7, 1998 AlignACE -jTOM.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YDR457W 403 bp YDR457W TOM1 1-9807 hect-domain-containing protein, required for G2\/M transition\; similar to RSP5\; contains motifs typical of protein kinases #2 YGR082W 300 bp YGR082W TOM20 1-552 20 kDa mitochondrial outer membrane protein import receptor #3 YHR117W 300 bp YHR117W TOM71 1-1920 71-kDa component of the protein translocase of the outer membrane of mitochondria #4 YMR060C 300 bp YMR060C TOM37 1-984 mitochondrial import receptor, heterodimerizes with Tom70p, preferentially recognizes the mature regions of precursor proteins associated with ATP-dependent cytosolic chaperones #5 YMR203W 300 bp YMR203W TOM40 1-1164 Mitochondrial outer membrane protein\; forms the outer membrane import channel #6 YNL131W 300 bp YNL131W TOM22 1-459 Mitochondrial import receptor complex protein #7 YNL121C 495 bp YNL121C TOM70 1-1854 70 kDa mitochondrial specialized import receptor of the outer membrane #8 YNL070W 394 bp YNL070W TOM7 1-183 translocase of the outer mito. membrane #9 YOR045W 371 bp YOR045W TOM6 1-186 outer mitochondrial membrane protein, component of the mitochondiral protein translocation complex, associates with Isp42p #10 YPR133W-A 346 bp YPR133W-A TOM5 1-153 Translocase of the Outer Mitochondrial membrane Motif number 1 CCTTTTCTTCTTTTCCTCTCCCAAAATCAT 1 264 0 TTTTCCTCTC 0.962582 -140 TGCTGTCTGTTTTTCCTCCTGGCTGTCAGC 3 43 0 TTTTCCTCCT 0.972263 -258 TGAGGCAGCCTTTTCTTCTTGTTTGTTCAG 3 80 1 TTTTCTTCTT 0.826075 -221 CAAGCTACACTTTTCTTCTTAATTATTACA 4 133 1 TTTTCTTCTT 0.826075 -168 TCTTATTACATTTCCCACTTCGTTTAAAAT 4 195 0 TTTCCCACTT 0.83057 -106 TCTTTAGCTTTTTATCACCTACGACGACGG 5 135 1 TTTATCACCT 0.689779 -166 AAAAGACGCCTTTTTCACTTTTTGCAAACG 5 175 0 TTTTTCACTT 0.952435 -126 TAGTTCCGTTTTGACCTCTTTGGTTACTTC 6 255 0 TTGACCTCTT 0.808613 -46 ACTATAACAGTTTTTCACTGCGTAACTGAA 7 104 1 TTTTTCACTG 0.929959 -392 CTTTAAGATCTTTTCCACTGGTCGTCCAAA 7 388 0 TTTTCCACTG 0.959931 -108 ACATCTTTGTTTTTTCACCTCATGTGGAAT 8 231 1 TTTTTCACCT 0.932314 -164 TATCGAGCCGTTTTCCTCCTGTGTGTATTC 9 70 0 TTTTCCTCCT 0.972263 -302 TAATATATTATTGTTCACTGATTTTGTCAC 9 211 1 TTGTTCACTG 0.872115 -161 GTTTGGCCCATTTTTCTCCCTCGTCTCTAA 9 267 0 TTTTTCTCCC 0.907469 -105 TGTTTTGTTTTTGTTCTCTTGAGAAGCCTA 9 333 0 TTGTTCTCTT 0.935507 -39 AGGGAGTTTATTGTCCTCTGAAGTATATAT 10 55 0 TTGTCCTCTG 0.945518 -292 CAAGAAGGTTTTTTTCTCTCACAATTTCTT 10 175 0 TTTTTCTCTC 0.934457 -172 ********** Masking position 2 Map Score: 13.6145 Number of sites scoring better than the average of aligned sites = 3572 Number in coding regions = 2138 Number in noncoding regions = 1434 Number of orfs with sites within 600 bp upstream = 1176 Fraction of orfs with sites within 600 bp upstream = 0.188885 Motif number 2 ATATTTATATTAGAAACAAGGAAACCATACA 1 20 0 TAGAAACAAG 0.980905 -384 GGGAGAGGAAAAGAAGAAAAGGTAAAACAAC 1 272 1 AAGAAGAAAG 0.953035 -132 GAAACACGCTTAGAAGCAAAG 2 1 0 TAGAAGCAAG 0.983473 -300 CCATTGAATATAGAAGCATAGATAAGCGATA 2 48 0 TAGAAGCATG 0.959519 -253 CTAGACCTACAAGAAACATTGCCTCAAGTGC 2 254 1 AAGAAACATG 0.965717 -47 CCGCGAATGCAAGAAACAATGGCTGACAGCC 3 22 1 AAGAAACAAG 0.986057 -279 CTGAACAAACAAGAAGAAAAGGCTGCCTCAT 3 79 0 AAGAAGAAAG 0.953035 -222 TGTAATAATTAAGAAGAAAAGTGTAGCTTGT 4 132 0 AAGAAGAAAG 0.953035 -169 TAATATAGAATAGAAACATAGTTGATGTTTG 6 92 1 TAGAAACATG 0.953406 -209 ACTTTATTGAAAGAAACACTGTGCAGGCAAC 7 200 1 AAGAAACACG 0.942933 -296 ACATGAGGTGAAAAAACAAAGATGTTGACGC 8 225 0 AAAAAACAAG 0.835371 -170 GTAACGCCTCTAGAAAGAAAGAGTAAACTTT 10 257 0 TAGAAAGAAG 0.881854 -90 ********* * Masking position 5 Map Score: 12.6381 Number of sites scoring better than the average of aligned sites = 1026 Number in coding regions = 788 Number in noncoding regions = 238 Number of orfs with sites within 600 bp upstream = 202 Fraction of orfs with sites within 600 bp upstream = 0.0324446 Motif number 3 ATAGTGCATATTTAGTTTACTTTTTGCCTTTGATTGAAAAT 1 365 1 TTTTTTTTTT 0.93488 -39 GGCTGCCTCATTCCCACTGCTGTCTGTTTTTCCTCCTGGCT 3 49 0 TTCTTTTTTT 0.958543 -252 GAAAAACTAATTCGCAATGGTATGTAAATAAGCAAGCTAAA 3 191 1 TTCTTTTTAA 0.880603 -110 GACTCTCCAGTTTGGCCTTTTATTTCGTTGTAGAATACTCT 4 83 1 TTTTTTTTGT 0.922128 -218 GGTTTCTGTATTTGCTATTGTCCATCCCTATCCTAGTTTTA 7 25 0 TTTTTCTTAT 0.910065 -471 CTTTCTTTCCTTCCACTTAATCCTTGAATGTTTGTTTCTGA 7 270 0 TTCTTCTTGT 0.901098 -226 GTAATTTCACTTCCGAATCTTGCTTCTCTTTTATGGTGAGT 7 438 0 TTCTTCTTTT 0.916983 -58 AAAATATCAATTTGTTATTTTGTATATATAAAAAATTAAAA 8 56 1 TTTTTTTTAA 0.82077 -339 TGAGTATTTTTTTTTTTTTTTTTTTAATTTTTTATATATAC 8 77 0 TTTTTTTTTT 0.93488 -318 AGCGAAGTATTTCAGTATAATGTATACGTATTTGAGTATTT 8 117 0 TTCTTTTTAT 0.971515 -278 TGACGCACCGTTTGACGTGATTTATTTATATCATTTTGAGA 8 190 0 TTTTTTTTAT 0.954918 -205 TATATCCTATATCCCACTCCTTTGTTAATTTCAACCAATTC 8 257 0 ATCTTTTTTT 0.766065 -138 ACGCATAAAGTTTAGCATACTACTTTCGTATATTATTGTTC 8 298 1 TTTTTCTTAT 0.910065 -97 AAGAAACTAGTTCCCTCTTATCTCTCAATATTTGCCAAAAT 8 344 1 TTCTTTTTAT 0.971521 -51 GTATGTATACATTTATATAATATATGCATATGGCGGATAAT 9 174 1 ATTTTTTTAT 0.749977 -198 TGGCCCATTTTTCTCCCTCGTCTCTAAATAATGCGAGGAAG 9 253 0 TTCTTTTTAA 0.880603 -119 TTTTCAATTATTTTGTCTGTGTTTTGTTTTTG 9 350 0 TTTTTTTTGT 0.922128 -22 AGAGTAAACTTTCGAATTCATTTCTTGATTTTATGATGTGC 10 228 0 TTCTTTTTTT 0.958543 -119 *** * * * * *** Masking position 11 Map Score: 12.9628 Number of sites scoring better than the average of aligned sites = 5011 Number in coding regions = 1445 Number in noncoding regions = 3566 Number of orfs with sites within 600 bp upstream = 1438 Fraction of orfs with sites within 600 bp upstream = 0.230967 Motif number 4 TCATAAAGTTTATTTTCTATT 2 290 1 TATTTCTATT 0.909541 -11 TACCATTGCGAATTAGTTTTTCACATTGCAC 3 182 0 AATTGTTTTT 0.807829 -119 AAGCAAGCTAAATTGGATTTTCAAAGTGCGA 3 220 1 AATTGATTTT 0.860209 -81 ATATACAAAAAATTCTTTATTCGCACTTTGA 3 240 0 AATTTTTATT 0.805389 -61 TGTAATAAGAAATAAGCTATTTAGAATGGCT 4 215 1 AATAGCTATT 0.727633 -86 TTATTATTATTATTATCTATTGTTTATATTC 5 104 1 TATTTCTATT 0.909544 -197 ACTATGTTTCTATTCTATATTATTGTACAAA 6 83 0 TATTTATATT 0.843971 -218 TAGAATTATATTTTTAAAACTAGG 7 4 1 AATTTATTTT 0.843964 -492 TCGGTTTCTGTATTTGCTATTGTCCATCCCT 7 37 0 TATTGCTATT 0.919616 -459 TATACAGTGATATTGTATATTTTAAACTAAT 7 323 0 TATTTATATT 0.843951 -173 TTTACTGGCGAATTTTATTTTCATTCTAACC 8 11 0 AATTTATTTT 0.843961 -384 AGAAAATATCAATTTGTTATTTTGTATATAT 8 54 1 AATTGTTATT 0.82424 -341 AGTATTTGAGTATTTTTTTTTTTTTTTTTTT 8 93 0 TATTTTTTTT 0.767323 -302 TATTTGCCAAAATTAGCTTTTAACAAATAAA 8 372 1 AATTGCTTTT 0.91962 -23 GGGTTTTCCATATTTTCTTTTA 9 2 0 TATTTCTTTT 0.89976 -370 ATTATGTGAGTATACGCTTTTGCCGTTATGG 9 110 0 TATAGCTTTT 0.702592 -262 ATCAGTGAACAATAATATATTATCCGCCATA 9 202 0 AATATATATT 0.568048 -170 **** ****** Masking position 8 Map Score: 8.65891 Number of sites scoring better than the average of aligned sites = 1662 Number in coding regions = 944 Number in noncoding regions = 718 Number of orfs with sites within 600 bp upstream = 519 Fraction of orfs with sites within 600 bp upstream = 0.0833601 Motif number 5 TAAAGACTTAATTAATATATTTATATTAGAAACA 1 33 0 ATTATTTTAT 0.747378 -371 CCGATACTAAATCACCATGATTTTGGGAGAGGAA 1 248 1 ATCATATTTT 0.917346 -156 AGTAAACTAAATATGCACTATTTTCTCACCAATT 1 352 0 ATCACATTTT 0.827261 -52 TTTTGTCACGATTGTTATCATTTTAAACGAAGTG 4 176 1 ATTATATTTT 0.962812 -125 CCATTATAATATAACTATTATTATTATTACTATT 5 60 1 ATTATATTAT 0.921453 -241 TACTATTACTATTATTATTATTATTATTATTATC 5 87 1 ATTATATTAT 0.928456 -214 CAATAAAGTCATCTTTATTATTTTTGAATAGTTG 7 175 0 ATTATATTTT 0.962812 -321 GACGTGATTTATTTATATCATTTTGAGACAGAAG 8 184 0 ATTATATTTT 0.962822 -211 TATCATACGTATGTATACATTTATATAATATATG 9 166 1 ATTACTTTAT 0.774848 -206 TGCTAATTGATATGTTTTTGCCTTTTATT 10 6 1 ATTATTTTTT 0.921353 -341 ** *** ***** Masking position 7 Map Score: 1.75676 Number of sites scoring better than the average of aligned sites = 1032 Number in coding regions = 588 Number in noncoding regions = 444 Number of orfs with sites within 600 bp upstream = 169 Fraction of orfs with sites within 600 bp upstream = 0.0271442 Motif number 6 GCCTTGCTTTGCGTTTATTTGAAAAATACAAATTC 4 260 0 GCTTTTTGAA 0.897615 -41 AGTGAAAAAGGCGTCTTTTGGTGGACATGAACTCA 5 186 1 GCTTTTGGGA 0.994341 -115 TCCGTAGTGAGTAACTTTTGGAGTAATACGAAGTA 6 226 1 GTATTTGGGA 0.940917 -75 TTGAATGATGCTTATTTTGGGGTATATAGTTCCG 6 277 0 GCTTTTGGGA 0.994341 -24 GCCAGTAAATGCGTATCTTGGAGAAAATATCAATT 8 33 1 GCTTTTGGGA 0.994341 -362 TTTGTTAAAAGCTAATTTTGGCAAATATTGAGAGA 8 364 0 GCATTTGGAA 0.986411 -31 TTCTTTGAAGGGAAGTTTTGGAAGAGTTAACTGTC 10 145 0 GGATTTGGAA 0.923158 -202 ACTGCAATTCGCTAATATTGGTGTAACGCCTCTAG 10 275 0 GCATTTGGGA 0.993037 -72 GCCAATGGACGCCTTTTGTGGGAAACTGCAATTCG 10 299 0 GCTTGTGGAA 0.954326 -48 ** * * **** * * Masking position 9 Map Score: 7.67021 Number of sites scoring better than the average of aligned sites = 274 Number in coding regions = 203 Number in noncoding regions = 71 Number of orfs with sites within 600 bp upstream = 67 Fraction of orfs with sites within 600 bp upstream = 0.0107613 Motif number 7 ATCACAAAGCGGCAAAACTGAAAGCAGTCGGGT 1 185 0 GCAAAAGAAA 0.98126 -219 TTTTGGGAGAGGAAAAGAAGAAAAGGTAAAACA 1 268 1 GAAAAGGAAA 0.874767 -136 TTCAATCAAAGGCAAAAAGTAAACTAAATATGC 1 370 0 GCAAAATAAA 0.897058 -34 GCTTGAGTATGTAAAACATGAAAAATTTGCAGT 2 117 1 GAAAACGAAA 0.960929 -184 TAGGCGAAGGGACAATAGGTAAATAACGTAAAT 2 224 0 GCAATATAAA 0.768561 -77 ACAGCCAGGAGGAAAAACAGACAGCAGTGGGAA 3 47 1 GAAAAAGACA 0.874767 -254 AAACTGGAGAGTCAAACAAGAGATATGTCCAGC 4 63 0 GCAAACGAGA 0.958371 -238 GAAATAAAAGGCCAAACTGGAGAGTCAAACAAG 4 76 0 GCAAACGAGA 0.958371 -225 TTCGGCGTTTGCAAAAAGTGAAAAAGGCGTCTT 5 170 1 GAAAAAGAAA 0.973747 -131 TAACCATCGTGCAAAACAATAAAAGACTACCAA 5 263 1 GAAAACTAAA 0.803657 -38 AACCAAAGAGGTCAAAACGGAACTATATACCCC 6 260 1 GCAAAAGAAC 0.87661 -41 ATGGACAATAGCAAATACAGAAACCGAAGTTAA 7 41 1 GAAATAGAAA 0.933927 -455 ATCATTTTGAGACAGAAGAGAGAGAGGATTTAG 8 169 0 GCAGAAGAGA 0.824892 -226 GCTAATTTTGGCAAATATTGAGAGATAAGAGGG 8 356 0 GAAATAGAGA 0.903591 -39 TAAAAGAAAATATGGAAAACCCTTTCAT 9 6 1 GAAATAGAAA 0.933927 -366 * ***** **** Masking position 4 Map Score: 9.26031 Number of sites scoring better than the average of aligned sites = 2063 Number in coding regions = 1216 Number in noncoding regions = 847 Number of orfs with sites within 600 bp upstream = 720 Fraction of orfs with sites within 600 bp upstream = 0.115644 Motif number 8 AATAAAGTGTAGAAGGGTATTCCTTCGGCG 1 86 0 AGAAGGGTAT 0.931809 -318 AGGAAAAGAAGAAAAGGTAAAACAACGAAT 1 277 1 GAAAAGGTAA 0.728535 -127 CTTGTGTGATGAAAGAGTATTCTACAACGA 4 107 0 GAAAGAGTAT 0.958141 -194 GTTTAGCTATAAAAGGGTTTGACAAAGAGT 6 43 0 AAAAGGGTTT 0.929091 -258 TGGAAGGAAAGAAAGAGTTTCATTGCCATT 7 296 1 GAAAGAGTTT 0.939883 -200 AAACACCCATGAAAGGGTTTTCCATATTTT 9 17 0 GAAAGGGTTT 0.96847 -355 CCATAACGGCAAAAGCGTATACTCACATAA 9 110 1 AAAAGCGTAT 0.814773 -262 GGGAAGTTTTGGAAGAGTTAACTGTCAGCT 10 141 0 GGAAGAGTTA 0.88377 -206 ATTCTTCCAAAGAAGGGTAACAAGAAGGTT 10 195 0 AGAAGGGTAA 0.903228 -152 CCTCTAGAAAGAAAGAGTAAACTTTCGAAT 10 252 0 GAAAGAGTAA 0.939885 -95 ********** Masking position 4 Map Score: 2.68952 Number of sites scoring better than the average of aligned sites = 1254 Number in coding regions = 888 Number in noncoding regions = 366 Number of orfs with sites within 600 bp upstream = 282 Fraction of orfs with sites within 600 bp upstream = 0.0452939 Motif number 9 AGTCGGGTAACGTGCGAAATATGATTAAATA 1 162 0 CGTGCGAATA 0.961025 -242 CTTTGTCCGCAGAGGGATATAGTAAATCAGG 4 23 1 AGAGGGAATA 0.986012 -278 TTTTAAACGAAGTGGGAAATGTAATAAGAAA 4 196 1 AGTGGGAATG 0.921076 -105 TCACCTACGACGACGGATATATTCGGCGTTT 5 149 1 CGACGGAATA 0.94873 -152 TCAATCGTGTCGAGCGATATAAGTATTACGA 6 141 1 CGAGCGAATA 0.975343 -160 TTAACAAAGGAGTGGGATATAGGATATAACG 8 270 1 AGTGGGAATA 0.977748 -125 TTGAGAGATAAGAGGGAACTAGTTTCTTTCA 8 341 0 AGAGGGACTA 0.949296 -54 TATTTAGAGACGAGGGAGAAAAATGGGCCAA 9 264 1 CGAGGGAAAA 0.952463 -108 ******* *** Masking position 7 Map Score: 2.74986 Number of sites scoring better than the average of aligned sites = 199 Number in coding regions = 145 Number in noncoding regions = 54 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 10 GAATATATATTTTCAATCAAAGGCAAAAAG 1 384 0 TTTCAATCAA 0.915528 -20 AATACTCTTTCATCACACAAGCTACACTTT 4 116 1 CATCACACAA 0.830606 -185 AATTTGTATTTTTCAAATAAACGCAAAGCA 4 261 1 TTTCAAATAA 0.79296 -40 CATACACCGCTTTCAAAGAATTGAAGATTG 5 219 0 TTTCAAAGAA 0.938336 -82 TTTTAGACAATTTCAATCAACATACTCCAC 6 196 1 TTTCAATCAA 0.915528 -105 CCTTTGTTAATTTCAACCAATTCCACATGA 8 250 0 TTTCAACCAA 0.943709 -145 AACTAGTTTCTTTCACCGAACAATAATATA 8 326 0 TTTCACCGAA 0.87431 -69 TATGCAAACATATCACACAAATCTATCATA 9 143 1 TATCACACAA 0.92741 -229 TTACAAGTGCTATCAAACAAAGATGCTGGG 10 105 1 TATCAAACAA 0.931793 -242 CAAAACTTCCCTTCAAAGAAATTGTGAGAG 10 160 1 CTTCAAAGAA 0.853805 -187 CGAATTGCAGTTTCCCACAAAAGGCGTCCA 10 299 1 TTTCCCACAA 0.857962 -48 ********** Masking position 9 Map Score: 2.76718 Number of sites scoring better than the average of aligned sites = 1313 Number in coding regions = 973 Number in noncoding regions = 340 Number of orfs with sites within 600 bp upstream = 295 Fraction of orfs with sites within 600 bp upstream = 0.0473819 Motif number 11 CCAAAATCATGGTGATTTAGTATCGGCTCATTA 1 241 0 GGTATAGTAT 0.927314 -163 CTTTGAAAGCGGTGTATGCGTATAAGGCCTTTT 5 231 1 GGTTTCGTAT 0.979501 -70 TGACCTCTTTGGTTACTTCGTATTACTCCAAAA 6 241 0 GGTATCGTAT 0.961635 -60 TTACATCATCATTATCTACGTATTATGGAGTTT 7 136 0 ATTTTCGTAT 0.929825 -360 AAAATTCGCCAGTAAATGCGTATCTTGGAGAAA 8 26 1 AGTATCGTAT 0.968141 -369 TACGTATTTGAGTATTTGAGTATTTTTTTTTTT 8 101 0 AGTTTAGTAT 0.967197 -294 ATTTCAGTATAATGTATACGTATTTGAGTATTT 8 117 0 AATTTCGTAT 0.882548 -278 AGACAAGCGAAGTATTTCAGTATAATGTATACG 8 130 0 AGTTTAGTAT 0.967197 -265 TTTGCATACGATTATGTGAGTATACGCTTTTGC 9 118 0 ATTTTAGTAT 0.870864 -254 *** * * ***** Masking position 7 Map Score: 2.71304 Number of sites scoring better than the average of aligned sites = 195 Number in coding regions = 120 Number in noncoding regions = 75 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 12 ACTTTAAAGTGTATGGTTTCCTTG 1 5 1 TAAAGTGTAT 0.969474 -399 TTAAAATGAATAAAGTGTAGAAGGGTATTC 1 94 0 TAAAGTGTAG 0.974588 -310 GCCACCTTCATAAAGTTTATTTTCTATT 2 283 1 TAAAGTTTAT 0.933754 -18 AATTAAGAAGAAAAGTGTAGCTTGTGTGAT 4 127 0 AAAAGTGTAG 0.888419 -174 ATATAACGCATAAAGTTTAGCATACTACTT 8 293 1 TAAAGTTTAG 0.944511 -102 TATTGTCCTCTGAAGTATATATAGAGGAAC 10 47 0 TGAAGTATAT 0.812634 -300 ATAGCACTTGTAAAGTATATGCAGGCCATA 10 88 0 TAAAGTATAT 0.933755 -259 ********** Masking position 4 Map Score: 1.20618 Number of sites scoring better than the average of aligned sites = 129 Number in coding regions = 63 Number in noncoding regions = 66 Number of orfs with sites within 600 bp upstream = 42 Fraction of orfs with sites within 600 bp upstream = 0.0067459 Motif number 13 ********** No masking Map Score: -5.1419e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -5.1419e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ATTTGAAAAATATTCGTTGTTTTACCTTTTCTTC 1 284 0 TATCGTGTTA 0.921823 -120 GTAAACTAAATATGCACTATTTTCTCACCAATTA 1 351 0 TATCACATTC 0.920967 -53 ATGGCCGACATTTACGTTATTTACCTATTGTCCC 2 215 1 TTTCGTATTC 0.889199 -86 TTGTTTCTTGCATTCGCGGTATGCGTCAAA 3 7 0 CATCGCGTTC 0.922414 -294 GAGCTTCTTATGTTCGGTATATACAAGTATGTAG 3 275 0 TGTCGGATTC 0.870723 -26 ACGACGGATATATTCGGCGTTTGCAAAAAGTGAA 5 158 1 TATCGGGTTC 0.977448 -143 AACGCCATCTTATTCATCGTATACAGTGATATTG 7 339 0 TATCATGTTC 0.949897 -157 TGCTAAACTTTATGCGTTATATCCTATATCCCAC 8 281 0 TATCGTATTC 0.982769 -114 CTCCTGTGTGTATTCATTATGTGATCCTAATTCC 9 51 0 TATCATATTA 0.685187 -321 AATAATATATTATCCGCCATATGCATATATTATA 9 189 0 TATCGCATTC 0.979186 -183 TTTGTCACTTTATACGTAGTCTTCCTCGCATTAT 9 233 1 TATCGTGTTC 0.987103 -139 *** *** ** * * Masking position 10 Map Score: 2.47524 Number of sites scoring better than the average of aligned sites = 406 Number in coding regions = 289 Number in noncoding regions = 117 Number of orfs with sites within 600 bp upstream = 89 Fraction of orfs with sites within 600 bp upstream = 0.0142949