AlignACE version 2.2 July 7, 1998 AlignACE -jUBC.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YBR082C 600 bp YBR082C ubc4 1-47, 143-542 ubiquitin-conjugating enzyme #2 YDL064W 300 bp YDL064W UBC9 1-38, 149-584 ubiquitin-conjugating enzyme #3 YDR059C 600 bp YDR059C ubc5 1-47, 138-537 ubiquitin-conjugating enzyme #4 YDR092W 600 bp YDR092W UBC13 1-30, 299-730 ubiquitin-conjugating enzyme #5 YDR177W 317 bp YDR177W ubc1 1-648 ubiquitin-conjugating enzyme #6 YEL012W 600 bp YEL012W UBC8 1-621 ubiquitin-conjugating enzyme\; ubiquitin-protein ligase #7 YER100W 500 bp YER100W ubc6 1-753 ubiquitin-conjugating enzyme #8 YLR306W 300 bp YLR306W UBC12 1-3, 138-701 Ubiquitin-conjugating enzyme #9 YOR339C 369 bp YOR339C UBC11 1-471 Motif number 1 CATTAAGAATAAAAAGGCAAAAAAG 1 5 1 AAAATAAAAA 0.844269 -596 ATAAAAAGGCAAAAAAGAAAAAAAAAAGCAC 1 19 1 AAAAAGAAAA 0.971265 -582 TGTTTATTGTATAAATGAGATACTTTGGAAT 1 216 0 ATAATGAGAT 0.659954 -385 AAGGATGAAGAAAAAAGAAAAATACAGGCCA 1 417 0 AAAAAGAAAA 0.971265 -184 GAAAAATAAGAATAAAGAAAAAGAAAGAAGG 1 444 0 AAAAAGAAAA 0.971265 -157 ACACGAAGTAATGAATGAAAACGAGTACGAT 2 81 0 ATAATGAAAA 0.897912 -220 GTATTGACGGAAAGAAGAAATGCCAAACATA 2 114 0 AAGAAGAAAT 0.702983 -187 ACATTTAAAAAAAGAAGAGAAATTTAGCATA 2 243 1 AAGAAGAGAA 0.841532 -58 AGATCAGATCATTAATAAGAAAA 3 3 0 ATAATAAGAA 0.624979 -598 ATTACGCACAATATAAGAAAAATCGGTTTAT 3 295 0 ATTAAGAAAA 0.731935 -306 GCCGACCCAAAATTATAAAAAATAATTGTAT 3 472 1 AATATAAAAA 0.500598 -129 TTAGCCCAGAAAAAAAGAGATGAAACGCTTA 4 126 0 AAAAAGAGAT 0.881775 -475 AATGCAGAACAAGAAGGAAAAAAGCTTGATA 4 199 1 AAAAGGAAAA 0.910421 -402 CCTTTAAACCATCAAAGAGAATAGTTCAGTT 4 391 1 ATAAAGAGAA 0.912208 -210 TAATATTGGAAAAAAAAAGAACAGAAGAGTG 4 544 0 AAAAAAAGAA 0.864946 -57 AACTATCCATAAAAAAAAAAAAATAGTCACA 5 72 1 AAAAAAAAAA 0.901011 -246 AATATTTCAGATGGAAGAAAATGTAACAAAA 5 125 0 ATGAAGAAAA 0.767294 -193 GAGGGGCAAAAACAATGAGATGACAGTTGAA 5 158 1 AAAATGAGAT 0.816254 -160 GGTTGGATACATTAAAAAAAACAAGTGGTAT 5 266 1 ATAAAAAAAA 0.799058 -52 TACTATTATTAAATAAGAAAACGTAAGAATG 6 163 0 AATAAGAAAA 0.862065 -438 CAGTGGAATTAAAAAAAAAAAGGGTGAGCAC 6 229 1 AAAAAAAAAA 0.901011 -372 GAGGATCACTAACAAAGAAAATGTCAATGAA 6 522 1 AAAAAGAAAA 0.971265 -79 ACTATTTTTCAACAATGAAAAAATTTTGAAC 7 101 0 AAAATGAAAA 0.952679 -400 TCCCCAATAAAATAAGGAAATTTTGGTTATT 7 312 1 AAAAGGAAAT 0.761177 -189 ATTGTAAATCAAGAAAAAAATTAGATCACAA 8 67 0 AAAAAAAAAT 0.740558 -234 AGTATTCTTGAAAAAAAAAAATACTATTAAC 8 146 1 AAAAAAAAAA 0.901011 -155 GACGGGAAAAATGAGAAAAAATCAAAA 9 7 1 AAAATGAGAA 0.934061 -363 CATTAACGTTATAAAGGAAAAATATTTCAAA 9 173 0 ATAAGGAAAA 0.816182 -197 CTGACACTGGATAAATGAGATATCAGAAAAA 9 283 1 ATAATGAGAT 0.659954 -87 ATAAGATGTAAAATATGAAAAATTTTTTCTG 9 306 0 AATATGAAAA 0.788245 -64 ** ******** Masking position 5 Map Score: 28.1401 Number of sites scoring better than the average of aligned sites = 8261 Number in coding regions = 4299 Number in noncoding regions = 3962 Number of orfs with sites within 600 bp upstream = 2305 Fraction of orfs with sites within 600 bp upstream = 0.370222 Motif number 2 CATTAAGAATAAAAAGGCAAAAAAGAAAAAAAAAAGCACAG 1 11 1 AAAAAAAAAA 0.956346 -590 TCGCTTCGAGAAAAACTATAACAATTGATTAGTGCGGAGAG 1 271 0 AAAAAAAAAA 0.956346 -330 AGAAAAAGAAAGAAGGATGAAGAAAAAAGAAAAATACAGGC 1 419 0 AGAAGAAAAA 0.78738 -182 TATTAAGATGAAAAATAAGAATAAAGAAAAAGAAAGAAGGA 1 443 0 AAAAAAAAAA 0.956346 -158 TCTATCCTGAAAAAAAATAAAGTAAAGAAGCCAGGAAAATC 1 502 1 AAAAAAAAAC 0.676823 -99 GACGGAAAGAAGAAATGCCAAACATACAACACGAAGTAATG 2 99 0 AGAAAAAAAA 0.949941 -202 TGAGAGATATAAAGTGAAGAAAGAATTACAAATTGTGGGAA 2 150 0 AAAGTAAAAA 0.867368 -151 AAACATTTAAAAAAAGAAGAGAAATTTAGCATAGGATAAGC 2 241 1 AAAAAAGAAA 0.830265 -60 ACTTACACAGAAAGTCCCAAAGTACAGATGAATTATACTAG 3 184 1 AAAGTAAAAA 0.867368 -417 AATGAGTACCAAAATAAGTAGGCAAAAAGTACAGCCTCTCA 3 244 0 AAAATAGAAA 0.627661 -357 CCTTGGAAAATAAAACTCCAACCATCTATTAAAATCCGGGA 3 502 0 TAAAAAAAAA 0.675503 -99 TCCAAACAAAGTAGTCAAATATTCAAGATCACTATTAG 4 8 1 AAAGTAAAAA 0.867368 -593 GTTCACATGTAGAGAAGGCAAAGAAAAAACTGCTTATTGTA 4 317 0 AGAGAAAAAT 0.811236 -284 ACTATCCATAAAAAAAAAAAAATAGTCACATAATACGAACA 5 73 1 AAAAAAAAAT 0.851359 -245 TTCAGATGGAAGAAAATGTAACAAAAAAGGATATTAATGTT 5 110 0 AGAAAAAAAA 0.949941 -208 CATGTCTCTTAAAGAATACAAGAATATATAAAGGCGAATCA 6 12 1 AAAGAAAAAA 0.949941 -589 TTATTAAATAAGAAAACGTAAGAATGTATATTTACGCAGAT 6 148 0 AGAAAAAAAT 0.832253 -453 AATATAATTTAGAAGTAAGAGCAAAATATTAATAGTATTTC 6 374 1 AGAAGAGAAA 0.452615 -227 CAACAATGAAAAAATTTTGAACAATAGATGATATGAGGAGG 7 82 0 AAAATAAAAA 0.883037 -419 ACAATGTCGGAGAGAGCTAAACTAGCCAACTCGCCATCCTA 7 207 1 AGAGAAAAAT 0.811236 -294 ATATCGCAGAAAAGACTTTAAATATTAACTAAAACCGCATT 7 438 1 AAAGAAAAAA 0.949941 -63 AAATGAGATGAAAAAGGCCAATCATTCATAAATGTACTTAG 8 225 1 AAAAAAAAAA 0.956346 -76 AAATGTACTTAGAGACATTAAAGAATCAGTTAGAGAATATA 8 254 1 AGAGAAAAAT 0.811236 -47 AATCAGTTAGAGAATATAAAACAAGATAATAAAA 8 277 1 AGAATAAAAA 0.867368 -24 AAAAATGAGAAAAAATCAAAACAAATAAAGATATACGTTAT 9 17 1 AAAAAAAAAA 0.956346 -353 GTAGCACCTATAAGATGTAAAATATGAAAAATTTTTTCTGA 9 305 0 TAAGAAAAAA 0.643264 -65 ***** ** * * * Masking position 10 Map Score: 23.8299 Number of sites scoring better than the average of aligned sites = 5396 Number in coding regions = 1508 Number in noncoding regions = 3888 Number of orfs with sites within 600 bp upstream = 1518 Fraction of orfs with sites within 600 bp upstream = 0.243816 Motif number 3 CTTATCACGTAAGACTACTTATTGTCAAACTTTTT 1 152 0 AAACTTATGT 0.93543 -449 TCTGGAAATTAAAAATTATTCCTGTCTCCATAACA 2 207 1 AAAATTCTGT 0.958278 -94 ACCCAAAATTATAAAAAATAATTGTATCCCGGATT 3 476 1 ATAATAATGT 0.810412 -125 TCGTCGCAAAATGAGAAATTAATGTTTAGCGATCT 4 47 0 ATAATTATGT 0.935925 -554 TTTTTTACAGAATATAAATTCATGTTAATTTTGAG 4 86 1 AAAATTCTGT 0.958278 -515 AGGCAAAGAAAAAACTGCTTATTGTACTTTGGTAA 4 308 0 AAACTTATGT 0.935431 -293 GGTTTAAAGGAAAACAAATTCCTGTTAGATGCCCA 4 366 0 AAAATTCTGT 0.958276 -235 ATGTAACAAAAAAGGATATTAATGTTCGTATTATG 5 101 0 AAGATTATGT 0.887287 -217 GATTAAGAGGAAAACAAATTATCGTGAAGAATCGT 6 53 0 AAAATTACGT 0.879225 -548 CGAGCATTGAAACAAGGATTAATGTGCCACTGATA 6 106 0 AAAATTATGT 0.980358 -495 CTTGATTTACAATAGTTATTAATGTTGAATATGTT 8 85 1 AAAATTATGT 0.980358 -216 AAAAAGGCCAATCATTCATAAATGTACTTAGAGAC 8 235 1 ATAATAATGT 0.810422 -66 GATATAGGATAATATAAATAATTGTACATTATTAC 9 59 1 AAAATAATGT 0.935916 -311 ATTTCAAATTAAGCTTCATTACTGTTGATATATTG 9 146 0 AACATTATGT 0.887287 -224 ** * **** *** Masking position 1 Map Score: 10.0592 Number of sites scoring better than the average of aligned sites = 345 Number in coding regions = 191 Number in noncoding regions = 154 Number of orfs with sites within 600 bp upstream = 107 Fraction of orfs with sites within 600 bp upstream = 0.017186 Motif number 4 CGGTCACATGGTCTGCGAGATTTTTCCCGCT 1 349 1 GTCTGCGGAT 0.921472 -252 TAAACGCGGTTTCTGAGAGATATAAAGTGAA 2 173 0 TTCTGAGGAT 0.939754 -128 CTTTGGGACTTTCTGTGTAAGTAAACCAAGA 3 175 0 TTCTGTGAAG 0.944921 -426 TCAAAACGCTTGCTACGAGAGTTTACACCGT 3 361 0 TGCTACGGAG 0.917176 -240 AATGATTAGATTCTGCGGGAGCCGCGGGAAC 4 242 1 TTCTGCGGAG 0.990943 -359 GAATTCAGACTGCTGTGTGATTAAGAGGAAA 6 75 0 TGCTGTGGAT 0.971261 -526 TTAATTCCACTGCTCCGGGAGCATTACCCGG 6 210 0 TGCTCCGGAG 0.967953 -391 TATATCACTCTTCTGAGAAAGTATGCCATAG 6 488 1 TTCTGAGAAG 0.901909 -113 TTAACCATTTTGCTGCGCGATTTGGTAGGAG 7 139 1 TGCTGCGGAT 0.98753 -362 AGTGCAATATTGCTGTGGAAGGATATCGACT 7 264 0 TGCTGTGAAG 0.952092 -237 TTCCTTTCTGTTCTCTGCAATCGATTTCGGC 7 357 0 TTCTCTGAAT 0.718649 -144 TTAAAGTCTTTTCTGCGATATGCGATGGTAG 7 428 0 TTCTGCGTAT 0.88418 -73 ******* *** Masking position 10 Map Score: 6.48664 Number of sites scoring better than the average of aligned sites = 580 Number in coding regions = 437 Number in noncoding regions = 143 Number of orfs with sites within 600 bp upstream = 114 Fraction of orfs with sites within 600 bp upstream = 0.0183103 Motif number 5 AATGTTGACTAAAACAGTAGCTGTGCTTTTTTTTTT 1 36 0 AATAGCTGGC 0.911579 -565 CCAGATGTTAAACGCGGTTTCTGAGAGATATAAAGT 2 176 0 AATTTCTGGA 0.978678 -125 AATATAAGAAAAATCGGTTTATGAGCCTAATGAATG 3 281 0 AATTTATGGC 0.840545 -320 GCCATGCTTCAAAACGCTTGCTACGAGAGTTTACAC 3 364 0 AATTGCTAGA 0.799774 -237 CCATCTTGAAAAGTCATTTTCTGCTCACCACCCTCA 3 563 1 AATTTCTGTC 0.970806 -38 GTTTAAAGGAAAACAAATTCCTGTTAGATGCCCATT 4 364 0 AATTCCTGTA 0.829185 -237 TGAGCACCGGAAACAGCTATCTGCGCTTAAGTATCA 6 253 1 AATATCTGGC 0.942642 -348 TCACGTGCTTAACCATTTTGCTGCGCGATTTGGTAG 7 131 1 AATTGCTGGC 0.97873 -370 GATAATCGGAAAGTTCCTTTCTGTTCTCTGCAATCG 7 365 0 AATTTCTGTC 0.970806 -136 GTTAATATTTAAAGTCTTTTCTGCGATATGCGATGG 7 431 0 AATTTCTGGA 0.978678 -70 TTTTCCTTGAAAATCTCTTTCTAATAATGACATCAT 9 215 0 AATTTCTATA 0.742714 -155 TAAAATATGAAAAATTTTTTCTGATATCTCATTTAT 9 293 0 AATTTCTGTA 0.954079 -77 ** ****** ** Masking position 2 Map Score: 3.46886 Number of sites scoring better than the average of aligned sites = 602 Number in coding regions = 459 Number in noncoding regions = 143 Number of orfs with sites within 600 bp upstream = 124 Fraction of orfs with sites within 600 bp upstream = 0.0199165 Motif number 6 GAAAACGAGTACGATAATTTTGATGATTTG 2 66 0 ACGATAATTT 0.962935 -235 TGAAAGTTATACCAACATTTTTGCTTATAT 3 86 1 ACCAACATTT 0.84157 -515 TCATTTTGCGACGATACTTTTTTTACAGAA 4 68 1 ACGATACTTT 0.955415 -533 TTTTAAAAACACCATAATTTCGGGTAACAA 4 440 0 ACCATAATTT 0.9305 -161 GTCACATAATACGAACATTAATATCCTTTT 5 97 1 ACGAACATTA 0.843919 -221 CCACTAAATTACGATACTTATGTCGTCACA 5 238 0 ACGATACTTA 0.918307 -80 ACGATTCTTCACGATAATTTGTTTTCCTCT 6 53 1 ACGATAATTT 0.962935 -548 ATTCAACGAAACTTACGACAAGATA 7 6 1 ACGAAACTTA 0.901225 -495 AACACAAATAACCAAAATTTCCTTATTTTA 7 319 0 ACCAAAATTT 0.915734 -182 ********** Masking position 4 Map Score: 2.56988 Number of sites scoring better than the average of aligned sites = 420 Number in coding regions = 265 Number in noncoding regions = 155 Number of orfs with sites within 600 bp upstream = 137 Fraction of orfs with sites within 600 bp upstream = 0.0220045 Motif number 7 GTTTTTTTGGATGCTTGTTTATGT 1 587 0 TTTTTGATGC 0.875056 -14 TTTGGATGACCTTTTAGATGAAGATCCCACT 2 39 0 CTTTTGATGA 0.965437 -262 TTCTCTTCTTTTTTTAAATGTTTGTTATGGA 2 233 0 TTTTTAATGT 0.821293 -68 TTTTCTTATTAATGATCTGATCTTA 3 5 1 CTTATAATGA 0.761573 -596 GTTGTGTTCATTGTTCCATGAGAGGCTGTAC 3 226 1 TTGTTCATGA 0.67079 -375 GCTAAAAAAGCTTTTCGATGTCTAGAAATAC 4 152 1 CTTTTGATGT 0.891007 -449 CTTTGGTAATTTTTTAAATGATATTTAAAAC 4 286 0 TTTTTAATGA 0.940086 -315 AAACAAATTCCTGTTAGATGCCCATTATATT 4 359 0 CTGTTGATGC 0.830533 -242 TGGCGCGCCATCTTTCAATGAATCACTTATC 4 475 0 TCTTTAATGA 0.893417 -126 ACCACTTGTTTTTTTTAATGTATCCAACCAC 5 264 0 TTTTTAATGT 0.821293 -54 TTCAAAGATATCGTTTAATGAAACAGTAGCT 6 554 1 TCGTTAATGA 0.82543 -47 GACAAGATAGTCTTTGGATGATGAGGAATAT 7 27 1 TCTTTGATGA 0.924801 -474 CCTGCGCGTGCCGTTTGATGATATCAGCCAA 8 188 1 CCGTTGATGA 0.895992 -113 CTCATTTTACCTTTTGGCTGATATCATCAAA 8 201 0 CTTTTGCTGA 0.779853 -100 TCTAAGTACATTTATGAATGATTGGCCTTTT 8 236 0 TTTATAATGA 0.717109 -65 TTAATGGACTCTTTTTAATGATGTCATTATT 9 198 1 CTTTTAATGA 0.951892 -172 ***** ***** Masking position 5 Map Score: 4.76912 Number of sites scoring better than the average of aligned sites = 1492 Number in coding regions = 1118 Number in noncoding regions = 374 Number of orfs with sites within 600 bp upstream = 285 Fraction of orfs with sites within 600 bp upstream = 0.0457758 Motif number 8 TAGTCAACATTCCTTTCTCACTGGAATGCACAAG 1 61 1 TCCTTCTCTG 0.98162 -540 AAGGCTAATGTCCTTATTCCAAAGTATCTCATTT 1 201 1 TCCTATTCAG 0.935673 -400 CCGCCGGTACTCCTTTTCCTGTTGCTCGGCCATT 1 318 0 TCCTTTCCTG 0.973186 -283 TAAAAATTATTCCTGTCTCCATAACAAACATTTA 2 216 1 TCCTTCTCTA 0.881241 -85 GAGAAATCTATCCTTATCCAATTGGTTGTTGCAG 3 124 0 TCCTATCCTG 0.973186 -477 CTTATTTTGGTACTCATTCATTAGGCTCATAAAC 3 267 1 TACTATTCTG 0.934773 -334 AGCGGCTGCCGCCTTACTCATTTGTACCAAAGAT 3 437 1 GCCTACTCTG 0.901655 -164 TTCTATGGCATACTTTCTCAGAAGAGTGATATAT 6 487 0 TACTTCTCAG 0.72539 -114 TTGTTAGTGATCCTCATTCTATGGCATACTTTCT 6 503 0 TCCTATTCTG 0.98483 -98 CTTTTAGAGCTACTGTTTCATTAAACGATATCTT 6 558 0 TACTTTTCTA 0.665684 -43 CAACTCGCCATCCTATTCCACTGGTCGCTTGAGT 7 233 1 TCCTTTCCTG 0.973186 -268 AACCAAAATTTCCTTATTTTATTGGGGAGGCTAT 7 306 0 TCCTATTTTG 0.823263 -195 **** **** * * Masking position 4 Map Score: 3.46657 Number of sites scoring better than the average of aligned sites = 798 Number in coding regions = 643 Number in noncoding regions = 155 Number of orfs with sites within 600 bp upstream = 134 Fraction of orfs with sites within 600 bp upstream = 0.0215226 Motif number 9 GTAGTCTTACGTGATAAGAAATGATGTAACA 1 169 1 GTGAAAGAAA 0.913209 -432 TACAAATTGTGGGAACCGAAGTATTGACGGA 2 134 0 GGGACCGAAG 0.921562 -167 GTTGAGGGTGGTGAGCAGAAAATGACTTTTC 3 570 0 GTGACAGAAA 0.989498 -31 CGGGAGCCGCGGGAACAGAAAATACTAACGT 4 257 1 GGGACAGAAA 0.98736 -344 CATCCGTATTGTTACCCGAAATTATGGTGTT 4 432 1 GTTACCGAAA 0.924265 -169 TTGGTTATTTGTGTTCAGAAAAAGCCGAAAT 7 334 1 GTGTCAGAAA 0.944089 -167 ATCGATTGCAGAGAACAGAAAGGAACTTTCC 7 363 1 GAGACAGAAA 0.980583 -138 GGATAAATGAGATATCAGAAAAAATTTTTCA 9 291 1 GATACAGAAA 0.920323 -79 **** ****** Masking position 9 Map Score: 1.44621 Number of sites scoring better than the average of aligned sites = 245 Number in coding regions = 170 Number in noncoding regions = 75 Number of orfs with sites within 600 bp upstream = 68 Fraction of orfs with sites within 600 bp upstream = 0.0109219 Motif number 10 AAAAAAGAAAAAAAAAAGCACAGCTACTGT 1 29 1 AAAAAAAGCA 0.917734 -572 ATCTATCCTGAAAAAAAATAAAGTAAAGAA 1 501 1 AAAAAAAATA 0.893106 -100 ACAAACATTTAAAAAAAGAAGAGAAATTTA 2 239 1 AAAAAAAGAA 0.911771 -62 AATGAGTACCAAAATAAGTAGGCAAAAAGT 3 255 0 AAAATAAGTA 0.824318 -346 TCCAAACAAAGTAGTCAAATATT 4 4 1 AAACAAAGTA 0.956068 -597 TATATTCTGTAAAAAAAGTATCGTCGCAAA 4 72 0 AAAAAAAGTA 0.96674 -529 GGTGTTTTTAAAACAAAGGATAAGTGATTC 4 457 1 AAACAAAGGA 0.893075 -144 AATATTGGAAAAAAAAAGAACAGAAGAGTG 4 544 0 AAAAAAAGAA 0.911771 -57 TCCATAAAAAAAAAAAAATAGTCACATAAT 5 77 1 AAAAAAAATA 0.893106 -241 TGGATACATTAAAAAAAACAAGTGGTATAT 5 269 1 AAAAAAAACA 0.762281 -49 ATTAAGAGGAAAACAAATTATCGTGAAGAA 6 57 0 AAACAAATTA 0.827708 -544 CCTCCCCAATAAAATAAGGAAATTTTGGTT 7 310 1 AAAATAAGGA 0.642961 -191 CGCAAATTGCAAACAAAGTACGTACAATAG 7 479 1 AAACAAAGTA 0.956068 -22 GTAAATCAAGAAAAAAATTAGATCACAAAA 8 65 0 AAAAAAATTA 0.865166 -236 ATTCTTGAAAAAAAAAAATACTATTAACGT 8 149 1 AAAAAAAATA 0.893106 -152 GAAAAAATCAAAACAAATAAAGATATACGT 9 25 1 AAACAAATAA 0.630725 -345 ********** Masking position 6 Map Score: 14.2356 Number of sites scoring better than the average of aligned sites = 2652 Number in coding regions = 918 Number in noncoding regions = 1734 Number of orfs with sites within 600 bp upstream = 1260 Fraction of orfs with sites within 600 bp upstream = 0.202377 Motif number 11 ACCTTGTGCATTCCAGTGAGAAAGGAATGT 1 67 0 TTCCAGTGAG 0.934935 -534 CAAAAAATGGTGCCAGTGTGTGCTTATCCT 2 273 0 TGCCAGTGTG 0.898255 -28 CTAGATGTATTGCTAGTGCTAGTACGGTGT 3 338 1 TGCTAGTGCT 0.893069 -263 TGGAGGTAGTTGCCACTGCGAGCGGGTAAT 3 405 1 TGCCACTGCG 0.978755 -196 AGGATTAATGTGCCACTGATAGAATTCAGA 6 97 0 TGCCACTGAT 0.936709 -504 TTTTTTTTAATTCCACTGCTCCGGGAGCAT 6 217 0 TTCCACTGCT 0.983532 -384 AGATAGCTGTTTCCGGTGCTCACCCTTTTT 6 245 0 TTCCGGTGCT 0.948456 -356 TAGGTAGGATTTCCAGTTCTGCCACATTTG 6 302 1 TTCCAGTTCT 0.885174 -299 CGCCATCCTATTCCACTGGTCGCTTGAGTC 7 238 1 TTCCACTGGT 0.919885 -263 TTGTACATTATTACAGTGCTGATAATCAAT 9 80 1 TTACAGTGCT 0.885174 -290 ********** Masking position 7 Map Score: 2.34412 Number of sites scoring better than the average of aligned sites = 1129 Number in coding regions = 954 Number in noncoding regions = 175 Number of orfs with sites within 600 bp upstream = 142 Fraction of orfs with sites within 600 bp upstream = 0.0228076 Motif number 12 ********** No masking Map Score: 7.80419e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 7.80419e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 AAAACAGTAGCTGTGCTTTTTTTTTTCTTTT 1 31 0 CTGGCTTTTT 0.921715 -570 ACAAGGGTAACTGCACTATTCATATGTCCAC 1 108 1 CTGACTATTC 0.974493 -493 AGGCCTTGGCCTGTATTTTTCTTTTTTCTTC 1 411 1 CTGATTTTTC 0.895318 -190 GATTTATTCTCTGGATTATTTATTAAGATGA 1 473 0 CTGATTATTT 0.920366 -128 CCATGAGAGGCTGTACTTTTTGCCTACTTAT 3 241 1 CTGACTTTTT 0.960139 -360 GCATAATTAACTGAACTATTCTCTTTGATGG 4 399 0 CTGACTATTC 0.974493 -202 TTACACTCTTCTGTTCTTTTTTTTTCCAATA 4 541 1 CTGTCTTTTT 0.811908 -60 TTTCTTCCATCTGAAATATTTGGAGGGGCAA 5 136 1 CTGAATATTT 0.820599 -182 AACCATTTTGCTGCGCGATTTGGTAGGAGGA 7 141 1 CTGGCGATTT 0.881118 -360 GCTACAAAACCTGTATGATTCGAGGCTTGCT 9 341 1 CTGATGATTC 0.843359 -29 *** ******* Masking position 9 Map Score: 2.31746 Number of sites scoring better than the average of aligned sites = 489 Number in coding regions = 352 Number in noncoding regions = 137 Number of orfs with sites within 600 bp upstream = 107 Fraction of orfs with sites within 600 bp upstream = 0.017186 Motif number 15 ********** No masking Map Score: 7.80419e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0