AlignACE version 2.2 July 7, 1998 AlignACE -jYAP.orf -y -e Parameter values: expect = 10 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 YDR259C 600 bp YDR259C YAP6 1-1152 bZIP protein #2 YGR241C 600 bp YGR241C YAP1802 1-1707 Yeast Assembly Polypeptide, member of AP180 protein family, binds Pan1p and clathrin #3 YHL009C 300 bp YHL009C yap3 1-993 bZip DNA binding proteins #4 YHR161C 600 bp YHR161C YAP1801 1-1914 Yeast Assembly Polypeptide, member of AP180 protein family, binds Pan1p and clathrin #5 YIR018W 489 bp YIR018W YAP5 1-738 bZIP protein\; transcription factor #6 YML007W 600 bp YML007W YAP1 1-1953 jun-like transcription factor #7 YOL028C 600 bp YOL028C YAP7 1-738 bZIP protein Motif number 1 GGCCCTGCTTCTTTTCCTTTTGATTTCTTT 1 306 1 CTTTTCCTTT 0.940628 -295 TTCCTTTTGATTTCTTTTTTTATTCTCAAG 1 319 1 TTTCTTTTTT 0.896993 -282 AGTGCCCCGCTTTTATTTCTCCCGCCAATC 2 151 0 TTTTATTTCT 0.513875 -450 ACATTTGGCCCTTTTCCTCCTTGATTGGAT 2 211 0 CTTTTCCTCC 0.832298 -390 GCAGGGTAACCTTTATTTTTTCTTTTCTTT 2 259 1 CTTTATTTTT 0.85274 -342 TTTATTTTTTCTTTTCTTTTACTCCTACCA 2 270 1 CTTTTCTTTT 0.96642 -331 ACTCCTACCATTTTTTTTTTCAGATTTTTC 2 290 1 TTTTTTTTTT 0.891964 -311 CGTAGAAAAGTTTCTTTTCTACATTCGAGG 2 378 1 TTTCTTTTCT 0.797654 -223 AGATTTATTTTTTCTCCTTCTAAAATTATA 2 462 0 TTTCTCCTTC 0.823414 -139 TTTTTTTGAATTTTTTTTTTTTCTTTAGAA 3 76 1 TTTTTTTTTT 0.891964 -225 TAGGTGTTTGCTTTACTTCCAGTATAAACT 3 253 1 CTTTACTTCC 0.718299 -48 AACCTTTGTGCTTCTTTTCTCTCGGACTTT 4 22 1 CTTCTTTTCT 0.907197 -579 TTCTCTCGGACTTTTTCTTCTTTCTTATTA 4 38 1 CTTTTTCTTC 0.886357 -563 ATACTCAACGCTTTTCTTTTTCTTCTTTTT 4 69 1 CTTTTCTTTT 0.96642 -532 TTTTCTTTTTCTTCTTTTTTTTTCCATCCT 4 80 1 CTTCTTTTTT 0.955741 -521 GTTTCGCTTTTTTCACCTTTTTCTACTTTC 5 169 0 TTTCACCTTT 0.655863 -321 GTGACTTATTTTTTTTTTTTGGTTTTAGGT 5 197 0 TTTTTTTTTT 0.891964 -293 ATATGGTTAACTTCACTTTCAGTGATTGAT 5 419 0 CTTCACTTTC 0.855929 -71 CAATGGTACACTTCATTTTTATCGCCT 6 8 0 CTTCATTTTT 0.859306 -593 CTAGGTTACTCTTTTCTTTTTCTGGGTGCG 6 282 1 CTTTTCTTTT 0.96642 -319 TGGTGTTTAGCTTTTTTTCCTGAGCCCCTG 6 484 1 CTTTTTTTCC 0.865115 -117 TAAGAAACAACTTTTCCTTCTTTAAACGTT 6 577 0 CTTTTCCTTC 0.916411 -24 AACCGATTGACTTTTTTTTTTTAGTTTT 7 9 0 CTTTTTTTTT 0.953432 -592 GTGACGTACGCTTCTCTTTGATCTTTTGCC 7 59 0 CTTCTCTTTG 0.753212 -542 TACCGCCTTATTTTTTTTTTTATACAGGAG 7 155 1 TTTTTTTTTT 0.891964 -446 TATGCTTATGCTTCTTCTTCCATATATTAC 7 327 0 CTTCTTCTTC 0.891614 -274 GGCAGCGGATTTTCTCTTTTATGCTTATGC 7 346 0 TTTCTCTTTT 0.924474 -255 TTTCAACGGTTTTTTCTTTTGAAATTTGAA 7 478 1 TTTTTCTTTT 0.920668 -123 ********** Masking position 3 Map Score: 29.8707 Number of sites scoring better than the average of aligned sites = 9498 Number in coding regions = 4551 Number in noncoding regions = 4947 Number of orfs with sites within 600 bp upstream = 2544 Fraction of orfs with sites within 600 bp upstream = 0.408609 Motif number 2 AGCGTACCCGTTTTTGTTTTTTTAGCTAATGCC 1 54 1 TTTTTTTTTT 0.983159 -547 GATTATGCTTTCTTTGTAATTTTAAACATAGTC 1 124 1 TCTTTTTTTT 0.923374 -477 AAACTATTACTTTTTAATGATTTCTGATACTCT 1 216 1 TTTTTAATTT 0.718659 -385 CTGTCATACTTTTTTCTGCATTTGAAACGCTAA 1 260 1 TTTTTTATTT 0.880453 -341 TTGGCCCTGCTTCTTTTCCTTTTGATTTCTTTT 1 304 1 TTCTTTTTTT 0.860924 -297 GGAGAATCTCTTTTTTTGTTTATTTTGTTAACA 1 361 1 TTTTTTTTAT 0.922163 -240 GGGTAACCTTTATTTTTTCTTTTCTTTTACTCC 2 262 1 TATTTTTTTT 0.815428 -339 TACCATTTTTTTTTTCAGATTTTTCCCAGTATG 2 295 1 TTTTTATTTT 0.952935 -306 CAGTATGGCTTTGTTTTCATTTTGCTTTGGTGG 2 321 1 TTGTTTTTTT 0.860924 -280 ACAGATTTATTTTTTCTCCTTCTAAAATTATAA 2 461 0 TTTTTTTTCT 0.874204 -140 AAATCAATTTTTTTTGAATTTTTTTTTTTTCTT 3 68 1 TTTTTATTTT 0.952935 -233 TCTCTCGGACTTTTTCTTCTTTCTTATTATATA 4 39 1 TTTTTTTTTC 0.854434 -562 AACGCTTTTCTTTTTCTTCTTTTTTTTTCCATC 4 75 1 TTTTTTTTTT 0.983159 -526 AGGTTTCGCTTTTTTCACCTTTTTCTACTTTCT 5 168 0 TTTTTATTTT 0.952935 -322 ACTTATTTTTTTTTTTTGGTTTTAGGTTTCGCT 5 191 0 TTTTTTTTTT 0.983159 -299 TTACTGCACCTTTTTGTCCTTTTCCGTGGAATA 5 347 0 TTTTTTTTTT 0.983159 -143 CTCGAAAACTTTTTTGTATTTATCGGAAACGGC 6 99 1 TTTTTTTTAT 0.922163 -502 ATTGACTTTTTTTTTTTAGTTTT 7 1 0 TTTTTTTTTT 0.983159 -600 CGTACGCTTCTCTTTGATCTTTTGCCATTGTTG 7 52 0 TCTTTATTTT 0.80693 -549 TACCGCCTTATTTTTTTTTTTATACAGGAGCAA 7 155 1 TTTTTTTTAT 0.922163 -446 ***** * **** Masking position 5 Map Score: 25.3103 Number of sites scoring better than the average of aligned sites = 6516 Number in coding regions = 1075 Number in noncoding regions = 5441 Number of orfs with sites within 600 bp upstream = 1484 Fraction of orfs with sites within 600 bp upstream = 0.238355 Motif number 3 ACCGAGTTTTTTTCCCCACCAATCGTGAAT 1 513 1 TTTCCCCACC 0.961008 -88 AGCGGCTCGCTTGACCCGCCCACGGAATGA 2 102 1 TTGACCCGCC 0.966353 -499 CCGCTTTTATTTCTCCCGCCAATCGGCTAT 2 145 0 TTCTCCCGCC 0.936712 -456 CATCTTGGGAGTGCCCCGCTTTTATTTCTC 2 160 0 GTGCCCCGCT 0.949768 -441 GACCCCTCAATTCCCCCACCTCTCTGCCAG 4 229 0 TTCCCCCACC 0.974846 -372 AGGGGTCCTCGCTACCCACCTTAAGTATGG 4 252 1 GCTACCCACC 0.808892 -349 TTTGTCCTTCCTCCCCCACCAAAAAGACGC 4 510 0 CTCCCCCACC 0.983992 -91 TAGTCATTGGCTGCCCGGCCTTGACTCACG 5 86 1 CTGCCCGGCC 0.982649 -404 TGGCGTTTCCGCTTCCCGCCCAAAACTGTG 5 133 1 GCTTCCCGCC 0.90339 -357 GTTGTGGGGCCCGCCCGGCCCAATAGGTAA 5 260 0 CCGCCCGGCC 0.972581 -230 GTAACAATTTGGGCCCCGCCAAAGCGCCGT 6 313 1 GGGCCCCGCC 0.984017 -288 AGAAAATCCGCTGCCCCACCGTAGAAAGCA 7 361 1 CTGCCCCACC 0.991686 -240 ********** Masking position 5 Map Score: 11.1651 Number of sites scoring better than the average of aligned sites = 391 Number in coding regions = 258 Number in noncoding regions = 133 Number of orfs with sites within 600 bp upstream = 126 Fraction of orfs with sites within 600 bp upstream = 0.0202377 Motif number 4 TTGTTTTTTTAGCTAATGCCCCTTTGCATTATG 1 67 1 ACAAGCCCCT 0.962699 -534 ATATTATTACCCCGATTACCCCTCATCTTGGGA 2 180 0 CCATACCCCT 0.785048 -421 ATAGTCGGGTAACATTTGGCCCTTTTCCTCCTT 2 219 0 ACTTGGCCCT 0.765861 -382 TTATAACTCAAGCAAGAAGCCCTAATAACAAGT 2 434 0 ACAGAGCCCT 0.966814 -167 GCGCGACTGTCTCGGCTACCCCTATAATAGATA 2 557 1 CCGCACCCCT 0.942098 -44 ATTTGAATATTACCGGAGGCCCTCTGAGCTTTC 3 188 1 TCGGGGCCCT 0.931639 -113 TAAAGCAAACACCTACTGCCCCTTTTATCGAAA 3 235 0 ACACGCCCCT 0.989541 -66 GAGTCACGTCAGTTGCTGACCCTGGGGGCTGCA 4 166 0 ATGCGACCCT 0.796042 -435 TAAGGTGGGTAGCGAGGACCCCTCAATTCCCCC 4 242 0 ACAGACCCCT 0.984589 -359 CCAAGTATCGAACTGAGGCCCCTGTGTTACCAA 4 350 0 ACGAGCCCCT 0.969104 -251 AGTCACGTGCACTCAGTACCCCTTCTATTGTAT 5 221 1 ATAGACCCCT 0.907646 -269 TTTCAAAAATAGTAACCAGCCCTAGCTGTTTGG 6 239 1 ATACAGCCCT 0.763841 -362 TTGTCATGGGAACCGGAAACCCTCCGATGAAGA 6 345 1 ACGGAACCCT 0.944882 -256 TTAGCTTTTTTTCCTGAGCCCCTGGTTGACTTG 6 490 1 TCTGGCCCCT 0.872398 -111 GTCACGGCAAAACCAGCGACCCTTCAAAACTAA 7 84 1 ACAGGACCCT 0.966592 -517 AAAAGAGAAAATCCGCTGCCCCACCGTAGAAAG 7 356 1 ACGCGCCCCA 0.907735 -245 * * ** ****** Masking position 10 Map Score: 10.0029 Number of sites scoring better than the average of aligned sites = 633 Number in coding regions = 462 Number in noncoding regions = 171 Number of orfs with sites within 600 bp upstream = 152 Fraction of orfs with sites within 600 bp upstream = 0.0244137 Motif number 5 CCCACCAATCGTGAATCCGATAGCATATACTTTTG 1 527 1 GTAATCGTCA 0.984478 -74 ACGGAATGACGTAAAGCCGTTAATAGCCGATTGGC 2 123 1 GTAAGCGTTA 0.967919 -478 CGTTCTGCGTGTTAAGCAGATGCCATAACCGACTA 3 12 0 GTAAGCGTCA 0.995712 -289 TTGAGACGAAGTGGAGCAGTTTACAGTGAATAATA 6 35 1 GTGAGCGTCA 0.993635 -566 AAAAAAAAAAGTCAATCGGTTCTCTTTTCTCTGAC 7 18 1 GTAATCGTCT 0.96503 -583 AATGCACGCAGTAAAGCTGCTCGCTCGAGAAAAAT 7 290 1 GTAAGCGTCT 0.989904 -311 CTCTTCGTTTGTTGAGCCGTTATCAAGGAAGTAAA 7 513 1 GTGAGCGTCA 0.993651 -88 ** **** * * ** Masking position 5 Map Score: 4.34142 Number of sites scoring better than the average of aligned sites = 61 Number in coding regions = 53 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 6 TCTGTCATACTTTTTTCTGCATTTGAAACG 1 259 1 TTTTTTCTGC 0.638047 -342 AACACCGAGTTTTTTTCCCCACCAATCGTG 1 510 1 TTTTTTCCCC 0.775212 -91 GTGCCCCGCTTTTATTTCTCCCGCCAATCG 2 150 0 TTTATTTCTC 0.568218 -451 AACATTTGGCCCTTTTCCTCCTTGATTGGA 2 212 0 CCTTTTCCTC 0.767261 -389 CTCCTACCATTTTTTTTTTCAGATTTTTCC 2 291 1 TTTTTTTTTC 0.846584 -310 CCCAGTATGGCTTTGTTTTCATTTTGCTTT 2 319 1 CTTTGTTTTC 0.558009 -282 AATAAGTCGACTTTTTCCTCGAATGTAGAA 2 394 0 CTTTTTCCTC 0.973106 -207 TACAGATTTATTTTTTCTCCTTCTAAAATT 2 465 0 TTTTTTCTCC 0.825342 -136 TTTTGAATTTTTTTTTTTTCTTTAGAAAAA 3 79 1 TTTTTTTTTC 0.846584 -222 TTGCTTCAGCCTTATTCTTCGTTAGTTTAT 3 276 0 CTTATTCTTC 0.941864 -25 AAGCACAAAGGTTTTTCCTCGAGG 4 5 0 GTTTTTCCTC 0.883702 -596 TTCTCTCGGACTTTTTCTTCTTTCTTATTA 4 38 1 CTTTTTCTTC 0.980229 -563 CAACGCTTTTCTTTTTCTTCTTTTTTTTTC 4 74 1 CTTTTTCTTC 0.980229 -527 CTTTTTCTTCTTTTTTTTTCCATCCTAGTC 4 84 1 TTTTTTTTTC 0.846584 -517 AGGGCGTCATCTTTTTCTACAAAAGCCAGG 4 201 0 CTTTTTCTAC 0.921076 -400 TATTCTTCATCATATTCTTCCATACTTAAG 4 271 0 CATATTCTTC 0.766176 -330 GAGTTATCATCATATTCTTCATCATATTCT 4 283 0 CATATTCTTC 0.766176 -318 CTTTTTTCACCTTTTTCTACTTTCTAACAC 5 163 0 CTTTTTCTAC 0.921076 -327 TTAGGTTTCGCTTTTTTCACCTTTTTCTAC 5 173 0 CTTTTTTCAC 0.738713 -317 TCTTTCAGATCATTTTTTTCCAGAATGCAT 5 297 1 CATTTTTTTC 0.768977 -193 CGAGTGAACTTTTATTCCACGGAAAAGGAC 5 335 1 TTTATTCCAC 0.482722 -155 TGGTGTTTAGCTTTTTTTCCTGAGCCCCTG 6 484 1 CTTTTTTTCC 0.823886 -117 TAAGAAACAACTTTTCCTTCTTTAAACGTT 6 577 0 CTTTTCCTTC 0.79181 -24 ATATATCGGCGATTTTTTTCATCGGTAATG 7 264 1 GATTTTTTTC 0.411426 -337 TATGCTTATGCTTCTTCTTCCATATATTAC 7 327 0 CTTCTTCTTC 0.832918 -274 AAGGCTATTGGTTATTCCTCTTTTCACCTG 7 394 1 GTTATTCCTC 0.712894 -207 ********** Masking position 3 Map Score: 22.48 Number of sites scoring better than the average of aligned sites = 6362 Number in coding regions = 4280 Number in noncoding regions = 2082 Number of orfs with sites within 600 bp upstream = 1449 Fraction of orfs with sites within 600 bp upstream = 0.232734 Motif number 7 CCGAAAGGCTCAAACAAAACTAAGGCCATC 2 51 0 CAAACAAAAC 0.953699 -550 CTGGTTTGGTCACGCAAAACCGAAAGGCTC 2 70 0 CACGCAAAAC 0.977622 -531 ATCTGCTTAACACGCAGAACGTCCCCAGTT 3 26 1 CACGCAGAAC 0.920656 -275 AATAGGAAAGCGCACGAAACAAATGAGTAA 4 122 1 CGCACGAAAC 0.956896 -479 ATTGACGAACAAAACAATTTGTCTT 5 6 1 CGAACAAAAC 0.970301 -484 TTCCGCTTCCCGCCCAAAACTGTGGTGTTA 5 139 1 CGCCCAAAAC 0.985774 -351 AATTTAGGGCCGAACAAAGCCCCGATCTTC 6 184 0 CGAACAAAGC 0.896669 -417 AGTTTTTTGCCACCCAAAACGTTTAAAGAA 6 560 1 CACCCAAAAC 0.977622 -41 ********** Masking position 8 Map Score: 3.7625 Number of sites scoring better than the average of aligned sites = 210 Number in coding regions = 138 Number in noncoding regions = 72 Number of orfs with sites within 600 bp upstream = 61 Fraction of orfs with sites within 600 bp upstream = 0.00979762 Motif number 8 AGCGTACCCGTTTTTGTTTTTTTAGCTAATGC 1 54 1 TTTTTTTTTT 0.844819 -547 TTTTGATTTCTTTTTTTATTCTCAAGTTTTTA 1 323 1 TTTTTATTCT 0.780026 -278 TATTCTCAAGTTTTTAATTTCTGGAGAATCTC 1 339 1 TTTTTTTTCT 0.970337 -262 TCTCTTTTTTTGTTTATTTTGTTAACACAGTT 1 367 1 TGTTTTTTGT 0.80977 -234 TAACCTTTATTTTTTCTTTTCTTTTACTCCTA 2 265 1 TTTTTTTTCT 0.970337 -336 ACTCCTACCATTTTTTTTTTCAGATTTTTCCC 2 290 1 TTTTTTTTCA 0.780026 -311 CTGCTACAGATTTATTTTTTCTCCTTCTAAAA 2 467 0 TTTATTTTCT 0.776842 -134 TTTTTGAATTTTTTTTTTTTCTTTAGAAAAAT 3 78 1 TTTTTTTTCT 0.970337 -223 CCCTCTGAGCTTTCTTATTTGTTTATCATTTC 3 207 1 TTTCTTTTGT 0.957328 -94 TCTCGGACTTTTTCTTCTTTCTTATTATATAC 4 41 1 TTTCTTTTCT 0.977867 -560 CGCTTTTCTTTTTCTTCTTTTTTTTTCCATCC 4 77 1 TTTCTTTTTT 0.880279 -524 TTCCTACGAATTACTCATTTGTTTCGTGCGCT 4 130 0 TTACTTTTGT 0.708617 -471 TTTTCACCTTTTTCTACTTTCTAACACCACAG 5 158 0 TTTCTTTTCT 0.977867 -332 ACGTGACTTATTTTTTTTTTTTGGTTTTAGGT 5 197 0 TTTTTTTTTT 0.844819 -293 TTGACCTAGGTTACTCTTTTCTTTTTCTGGGT 6 277 1 TTACTTTTCT 0.827264 -324 ACACGAGCCATTTTTAGTTTGTTTAAGGGAAG 6 530 1 TTTTTTTTGT 0.943217 -71 AAGTCAATCGGTTCTCTTTTCTCTGACAACAA 7 26 1 GTTCTTTTCT 0.793598 -575 ACCGCCTTATTTTTTTTTTTATACAGGAGCAA 7 156 1 TTTTTTTTAT 0.791638 -445 AGGAGCAAAGTGTCTTTTTTGTGATGGCCACG 7 180 1 TGTCTTTTGT 0.851834 -421 GGCAGCGGATTTTCTCTTTTATGCTTATGCTT 7 344 0 TTTCTTTTAT 0.836904 -257 CCAATAGCCTTGTTTGCTTTCTACGGTGGGGC 7 373 0 TGTTTTTTCT 0.893424 -228 TTTCAACGGTTTTTTCTTTTGAAATTTGAAAA 7 478 1 TTTTTTTTGA 0.642937 -123 ATTTTGTGCCTTTCTATATTCTTTAATTGATG 7 549 0 TTTCTATTCT 0.827264 -52 ***** ***** Masking position 5 Map Score: 27.2242 Number of sites scoring better than the average of aligned sites = 3511 Number in coding regions = 1398 Number in noncoding regions = 2113 Number of orfs with sites within 600 bp upstream = 1353 Fraction of orfs with sites within 600 bp upstream = 0.217314 Motif number 9 TTATGCCGAAGGGTAGAAACTTTGTTCAAGAT 1 95 1 GGGTAAACTT 0.951388 -506 GGGGTAATCGGGGTAATAATATCCAATCAAGG 2 191 1 GGGTAAATAT 0.965127 -410 CTTCTTGCTTGAGTTATAATTTTAGAAGGAGA 2 448 1 GAGTTAATTT 0.916135 -153 TCTGTAGCAGGAGTACCAATTTGCTACGCTTG 2 489 1 GAGTAAATTT 0.981367 -112 ACATCTACGAGAGTAACAATATCAAGCATACA 2 524 1 GAGTAAATAT 0.95819 -77 GCAGATACTAGAGTATAAATTTCGATTGAGGC 4 576 1 GAGTAAATTT 0.981367 -25 TTCTGGGTGCGGGTAACAATTTGGGCCCCGCC 6 301 1 GGGTAAATTT 0.984524 -300 ***** ***** Masking position 8 Map Score: 2.23254 Number of sites scoring better than the average of aligned sites = 99 Number in coding regions = 70 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 10 CTATGTTTAAAATTACAAAGAAAGCATAATC 1 124 0 ATTACAAAGA 0.829698 -477 TAAACAACAGAATAACGAAGAGTGCTAAGGG 1 576 1 ATAACGAAGA 0.982702 -25 TCCAGTATAAACTAACGAAGAATAAGGCTGA 3 270 1 ATAACGAAGA 0.982701 -31 AGGATGGAAAAAAAAAGAAGAAAAAGAAAAG 4 79 0 AAAAAGAAGA 0.74499 -522 ATTGACGAACAAAACAATTTG 5 1 1 ATGACGAACA 0.872499 -489 AACCAGTGGTAGTTACGAAGACAAATTGTTT 5 22 0 ATTACGAAGA 0.977592 -468 CCGGGCAGCCAATGACTAAGAACACGAGGTA 5 73 0 ATGACTAAGA 0.840237 -417 ACGAGGTACCATATACGAAGATCGGGGCTTT 6 168 1 AATACGAAGA 0.958134 -433 TAACGGCTCAACAAACGAAGAGCAATTTTCA 7 504 0 AAAACGAAGA 0.967532 -97 * ********* Masking position 5 Map Score: 3.20106 Number of sites scoring better than the average of aligned sites = 599 Number in coding regions = 472 Number in noncoding regions = 127 Number of orfs with sites within 600 bp upstream = 101 Fraction of orfs with sites within 600 bp upstream = 0.0162223 Motif number 11 ATTCGAAAAACTTTTATCCACATGCAGTAAAAAT 1 165 0 CTTTATAATG 0.983485 -436 GACGTTCTGCGTGTTAAGCAGATGCCATAACCGA 3 15 0 GTTTAAAATG 0.819798 -286 CGTTGCTGTACTCTTAACATAAAGCTACGAAAAT 3 119 0 CTTTAATAAG 0.838316 -182 CCTACTGCCCCTTTTATCGAAATGATAAACAAAT 3 223 0 CTTTATAATG 0.982393 -78 GGGCTGGTTACTATTTTTGAAAAGATGCAACAGG 6 227 0 CTTTTTAAAG 0.739385 -374 AAACGGAAGACTATTAAGCAAATGTATCTCTTAA 6 412 0 CTTTAAAATG 0.969013 -189 GATAGGGTGTCTATTATATACATGCATAATAATT 7 116 0 CTTTATAATG 0.982838 -485 CGGATTTTCTCTTTTATGCTTATGCTTCTTCTTC 7 337 0 CTTTATTATG 0.969049 -264 ACTTTCAAGCCTCTTATGATGATGTGCTACAGAT 7 431 0 CTTTATTATG 0.96905 -170 ** **** * *** Masking position 5 Map Score: 2.11859 Number of sites scoring better than the average of aligned sites = 247 Number in coding regions = 149 Number in noncoding regions = 98 Number of orfs with sites within 600 bp upstream = 69 Fraction of orfs with sites within 600 bp upstream = 0.0110826 Motif number 12 AAAGAGCGTACCCGTTTTTGTTTTTTTAGCT 1 50 1 CCCGTTTTGT 0.929731 -551 TAGATATAGAGGCGTGTTTGTGAAACA 2 584 1 GGCGTTTTGT 0.929731 -17 GAATAATAATGCCGTTGCTGTACTCTTAACA 3 134 0 GCCGTGCTGT 0.991438 -167 AAGCGGAAACGCCATAGTTGTAGGTCACTGG 5 116 0 GCCATGTTGT 0.990001 -374 TCTGAAAGATGCCACAGTTGTGGGGCCCGCC 5 275 0 GCCACGTTGT 0.963349 -215 ATAGTAACCAGCCCTAGCTGTTTGGTTGATT 6 247 1 GCCCTGCTGT 0.970494 -354 CCGCCAAAGCGCCGTCTTTGTCATGGGAACC 6 328 1 GCCGTTTTGT 0.987645 -273 TTGATCTTTTGCCATTGTTGTCAGAGAAAAG 7 41 0 GCCATGTTGT 0.990001 -560 ***** ***** Masking position 9 Map Score: 5.05808 Number of sites scoring better than the average of aligned sites = 285 Number in coding regions = 239 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 13 CGCCCAGGATCGAACTGGGGACGTTCTGCG 3 38 0 CGAACTGGGG 0.965551 -263 CCCAGGGTCAGCAACTGACGTGACTCAGCC 4 173 1 GCAACTGACG 0.981352 -428 GAGAGGTGGGGGAATTGAGGGGTCCTCGCT 4 235 1 GGAATTGAGG 0.957786 -366 TACCAAGTATCGAACTGAGGCCCCTGTGTT 4 355 0 CGAACTGAGG 0.987122 -246 CAGAATGCATGGAACTGACGAGTGAACTTT 5 317 1 GGAACTGACG 0.990166 -173 TAGGAGGGTGGCAACTGATGGATGCGTAAG 6 379 1 GCAACTGATG 0.950724 -222 ********** Masking position 6 Map Score: 1.21936 Number of sites scoring better than the average of aligned sites = 169 Number in coding regions = 134 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 14 GGGCGGGTCAAGCGAGCCGCTCCCTGGTTT 2 93 0 AGCGAGCCGC 0.992782 -508 TTATAACTCAAGCAAGAAGCCCTAATAACA 2 437 0 AGCAAGAAGC 0.922415 -164 TAAGGTGGGTAGCGAGGACCCCTCAATTCC 4 245 0 AGCGAGGACC 0.979618 -356 AACTCTTGGAAGCGAGCGGCGGGTTCCATC 4 308 1 AGCGAGCGGC 0.99278 -293 AGCGAGAGTAAGTGAGGAGCAGACAATGTA 6 68 0 AGTGAGGAGC 0.970086 -533 ATTTTTCTCGAGCGAGCAGCTTTACTGCGT 7 295 0 AGCGAGCAGC 0.996735 -306 ********** Masking position 5 Map Score: 3.31503 Number of sites scoring better than the average of aligned sites = 65 Number in coding regions = 44 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 15 TGCTTGCTGCATCTGCGGAATTGT 1 5 1 TGCTGCATCT 0.984453 -596 CACTTATTTTTACTGCATGTGGATAAAAGT 1 160 1 TACTGCATGT 0.911378 -441 CTAGTCGGTTATGGCATCTGCTTAACACG 3 10 1 TATGGCATCT 0.945734 -291 AGCAAACACCTACTGCCCCTTTTATCGAAA 3 235 0 TACTGCCCCT 0.917186 -66 GCCCCACAACTGTGGCATCTTTCAGATCAT 5 280 1 TGTGGCATCT 0.954552 -210 ACCATTCCATTACTGCACCTTTTTGTCCTT 5 359 0 TACTGCACCT 0.972961 -131 GATCTTACCCTGTTGCATCTTTTCAAAAAT 6 219 1 TGTTGCATCT 0.968721 -382 ********** Masking position 1 Map Score: 0.842879 Number of sites scoring better than the average of aligned sites = 297 Number in coding regions = 235 Number in noncoding regions = 62 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331